TCONS_00069333-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069333-protein
Unique NameTCONS_00069333-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069333-protein ID=TCONS_00069333-protein|Name=TCONS_00069333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MKVKNLHTLFNRPSTINTIKQNLQKSFTAQMTAQAAPLSVMKAHLKDEVT
LDGILKARERIKDHVYVTPVMTCSYFDQLLGDGKKLYFKCENFQKTGSFK
IRGALNSVSRIIEERGNTDFHTLTHSSGNAGQAIALASSTKGVQAKVVMP
LNAPVSKKNATEGYGAEIFRCENSSEARSKMTQEIADKNPDKAEYIPSAD
HPFMMEGQGTITLEMLEQQPDLDALVIACSVGGMIAGMAKVCKLVKPNVK
VFAVEPDRADDLAQSFKTGKQVKLSAYPDTIADGLRMSVGDQTWPVIRET
VEPDVLLVTEEEIKKSMYLIFERMKLVVEPSAAVVLAAVLTDQFRSLSGG
LNNIGLVLCGGNPDLKSLPW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043208XLOC_043208Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069333TCONS_00069333Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1100coord: 211..369
e-value: 8.5E-31
score: 106.4
NoneNo IPR availableGENE3D3.40.50.1100coord: 61..210
e-value: 2.3E-33
score: 114.8
NoneNo IPR availableCDDcd01562Thr-dehydcoord: 51..364
e-value: 5.25431E-116
score: 341.004
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymePFAMPF00291PALPcoord: 63..360
e-value: 1.0E-66
score: 225.2
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymeSUPERFAMILY53686Tryptophan synthase beta subunit-like PLP-dependent enzymescoord: 50..366
IPR000634Serine/threonine dehydratase, pyridoxal-phosphate-binding sitePROSITEPS00165DEHYDRATASE_SER_THRcoord: 91..104

Blast
[Close]
BLAST of TCONS_00069333-protein vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.652e-88
Identity = 145/324 (44.75%), Postives = 210/324 (64.81%), Query Frame = 0 
Query:   49 VTLDGILKARERIKDHVYVTPVMTCSYFDQLLGDGKKLYFKCENFQKTGSFKIRGALNSVSRIIEER-GNTDFHTLTHSSGNAGQAIALASSTKGVQAKVVMPLNAPVSKKNATEGYGAEIFRCENSSEARSKMTQEIADKNPDKAEYIPSADHPFMMEGQGTITLEMLEQQPDLDALVIACSVGGMIAGMAKVCKLVKPNVKVFAVEPDRADDLAQSFKTGKQVKLSAYPDTIADGLRMSVGDQTWPVIRETVEPDVLLVTEEEIKKSMYLIFERMKLVVEPSAAVVLAAVLTDQFRSLSGGLNNIGLVLCGGNPDL-KSLPW 370
            ++   + KA   I+D +++TPV+T S  +QL   G+ L+FKCE FQKTGSFKIRGALN+V  ++ +         +THSSGN GQA+  A+  +G+ A +V+P  AP  KK A + YGA I  CE S E+R  + + + ++   +   +     P ++ GQGTI LE+L Q P +DALV+    GGM+AG+A   K +KP+VKV+A EP  ADD  QS   GK +     P+TIADG++ S+G  TWP+IR+ V+ D+  VTE+EIK +  L++ERMKL++EP+A V +AAVL+  F+++S  + NI +VL GGN DL  S+ W
Sbjct:    7 ISFADVEKAHINIRDSIHLTPVLTSSILNQL--TGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEET--EGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVD-DIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSITW 325
The following BLAST results are available for this feature:
BLAST of TCONS_00069333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR2.652e-8844.75Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1[more]
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