TCONS_00069355-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069355-protein
Unique NameTCONS_00069355-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069355-protein ID=TCONS_00069355-protein|Name=TCONS_00069355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
METAIIRNDEETEIYTIGKHSCFGCQQIIGDQFLSKVLDKVWHDDCIRCC
ACQQLLKDKCFSRDYKLYCKDDFYRTFGVKCAGCEDSIYPSDLVRRIANR
IFHLSCLKCDQCKLEASTGDQIYLLDDGRFLCAKDYEVMASADEAKLNEE
RPSPVSMGQNFDLQDKLPQTPTGLSNKDTIIGNHGNKTENHDGGPSDDDD
DANRRRGPRTTIKAKQLEVLKAAFLATPKPSRHIREKLAADTGLTMRVIQ
VWFQNRRSKERRVKQLSVHDASRRNFRKGSMEKERTPVDMNYPFFQSPSS
SNGMEDFQQQQQRNFNFDVYQQAAGAAENVPQNAGPGAANSLPFPLPNDD
NMGQQDNTDKTKYNGDNTPPGDYQMLENFNGQVPLPPGGAQNQVPVTSGF
NGFPNFSVPPNSMPNF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043220XLOC_043220Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069355TCONS_00069355Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR001781Znf_LIM
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 205..267
e-value: 1.6E-22
score: 90.8
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 206..262
e-value: 1.1E-19
score: 69.9
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 203..263
score: 18.172
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 21..72
e-value: 7.6E-12
score: 55.4
coord: 80..135
e-value: 2.1E-9
score: 47.3
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 22..77
e-value: 1.1E-12
score: 47.9
coord: 81..137
e-value: 1.4E-12
score: 47.5
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 22..56
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 80..142
score: 10.177
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 20..79
score: 13.078
NoneNo IPR availableGENE3D1.10.10.60coord: 199..273
e-value: 2.2E-23
score: 81.2
NoneNo IPR availableGENE3D2.10.110.10coord: 16..77
e-value: 1.2E-13
score: 50.3
NoneNo IPR availableGENE3D2.10.110.10coord: 78..161
e-value: 4.8E-13
score: 48.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..370
NoneNo IPR availableCDDcd00086homeodomaincoord: 206..264
e-value: 4.24583E-20
score: 82.2912
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 48..113
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 15..47
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 238..261
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 202..266

Blast
[Close]
BLAST of TCONS_00069355-protein vs. Swiss-Prot (Human)
Match: LHX5 (LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.655e-86
Identity = 131/255 (51.37%), Postives = 171/255 (67.06%), Query Frame = 0 
Query:   22 CFGCQQIIGDQFLSKVLDKVWHDDCIRCCACQQLLKDKCFSRDYKLYCKDDFYRTFGVKCAGCEDSIYPSDLVRRIANRIFHLSCLKCDQCKLEASTGDQIYLLDDGRFLCAKDYEVMASADEAKLNEERPSPVSMGQNFDLQDKLPQTPTGLSNKDTIIGNHGNKTENHDGGPSDDDDDANRRRGPRTTIKAKQLEVLKAAFLATPKPSRHIREKLAADTGLTMRVIQVWFQNRRSKERRVKQLSVHDASRRNF 276
            C GC++ I D+FL  VLD+ WH  C++CC C+  L +KCFSR+ KLYCK+DF+R FG KCAGC   I PSDLVR+  +++FHL+C  C  C  + STG+++Y++D+ +F+C  DY   +S  E  LN    S      + DLQD L   P    N  +       +T N++   +++ +   +RRGPRTTIKAKQLE LKAAF ATPKP+RHIRE+LA +TGL MRVIQVWFQNRRSKERR+KQLS   A R  F
Sbjct:    5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVS-SCTDRSLSPDLQDALQDDPKETDNSTS----SDKETANNE---NEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAF 251
The following BLAST results are available for this feature:
BLAST of TCONS_00069355-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LHX56.655e-8651.37LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 ... [more]
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