TCONS_00069372-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069372-protein
Unique Name	TCONS_00069372-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	976

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069372-protein ID=TCONS_00069372-protein|Name=TCONS_00069372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=976bp
MADLMDQYADIEVNASSTNPFLTNETEEMIKTGFVPLQSPDTETPIFKRE
RFSFRPNSKIVDIDVSNNLMFIGLESNHVKRIDILHPNETDTIEVSKKSG
DSIRKLHLDPSGNHLLIAMKSGEVFYLGSSNKKARSLEKLKNLEMECVGW
NKISATEISTGQILLGSRKGVIYETDINSEEKFFLSMGSDSPKQIFNVNV
GREKEESITEIHIERFQNFEKRYAVFVCTKSRFYQFVGDASNEVPMFQTV
LNVFSPNPTPYLELPGDLSESDFGLFFPRAKGLPKFFGWLTGPGVYFGQL
DFSRSSLKQNVTTDSRLLKPTEIQRDVPLSIGITEFHCILLYENRFEAVC
TLNDEEDYMENIPPRLGTMIGLRYDIHRKSMWAFTESYIFQYKINNETRD
VWKLYLDRGDFEQAKLYCKNNPAQMDLVLRKQADAYFLDKKFQQAAATYA
LTQISFEEVSLKFLQAKDTEALKIFLQKKMINLKNNDKTQLMMLVTWVME
LYLNQLGEHRDNGYDGGYENLQDEFRKFLNQNRVKNILEQNTHVAYELLS
SHADTENMIFFAMLVHDYPRVIRHYIQQEDYKGALEVLKKEQTEYQSLFE
QFSPTLIQHIPKQLVELWKQRNLEPRRMIPSLVTQTESNNDESIRCAIDY
LEHCVYKLKNEETAIHNYLVSLYCKIAEERPLLQYLNSQGQDDQSVCYDL
KYALRLCSENGKDQATVQIYCTMNLYEEAVDLALKVDIEKAKLYADKPEY
DRALKKKLWLKVARHVVEQKQDVGKAMELLKECPLLKIEDVLPFFPDFVT
IDHFKDAICESLQEYNHHIDQLKSDMQEATESAKVVRAEIHDIRNRYGAI
DSQAKCSLCGFPLVTRAFYFFPCSHTFHADCLIEKVKENMTNNKRNRVEE
LVNTLRDLDMTSNNQTTNSQTSLAAKNSKTNRHTLQESLDELVSSECFFC
GDVMIKSLDQPLIDDLEFEKQLDNWK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043226	XLOC_043226	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069372	TCONS_00069372	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR013083	Znf_RING/FYVE/PHD
IPR019453	VPS39/TGF_beta_rcpt-assoc_2
IPR007810	Pep3_Vps18
IPR000547	Clathrin_H-chain/VPS_repeat
IPR011990	TPR-like_helical_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 812..846
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 910..930
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 855..891
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 38..240 e-value: 1.6E-6 score: 26.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 855..959 e-value: 1.3E-5 score: 24.0
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2	PFAM	PF10367	Vps39_2	coord: 783..882 e-value: 4.8E-5 score: 23.6
IPR007810	Pep3/Vps18/deep orange	PFAM	PF05131	Pep3_Vps18	coord: 294..437 e-value: 5.8E-39 score: 133.2
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 624..772 e-value: 1.8E-9 score: 37.5
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 620..775 score: 21.656
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 640..854 e-value: 2.2E-30 score: 105.5 coord: 336..639 e-value: 2.7E-10 score: 39.4
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 52..192

Blast

[Close]

BLAST of TCONS_00069372-protein vs. Swiss-Prot (Human)
Match: VPS18 (Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2)

HSP 1 Score: 730.324 bits (1884), Expect = 0.000e+0
Identity = 394/988 (39.88%), Postives = 592/988 (59.92%), Query Frame = 0

Query:    1 MADLMDQYADIEVNASSTNPFLTNETEEMIKTGFVPLQSPDTETPIFKRERFSFRPNSKIVDIDVSNNLMFIGLESNHVKRIDILHPNETDTIEVSKKSGDSIRKLHLDPSGNHLLIAMKSGEVFYLGSSNKKARSLEKLKNLEMECVGWNKISATEISTGQILLGSRKGVIYETDINSEEKFFLSMGSD---SPKQIFNVNVGREKEESITEIHIERFQNFEKRYAVFVCTKSRFYQFVGDASN--EVPMFQTVLNVFSPNPTPYLELPGDLSESDFGLFFPRAKGLPKFFGWLTGPGVYFGQLDFSRSSLKQNVTTDSRLLK-PTEIQRDV--PLSIGITEFHCILLYENRFEAVCTLNDEEDYMENIPPRLGTMIGLRYDIHRKSMWAFTESYIFQYKINNETRDVWKLYLDRGDFEQAKLYCKNNPAQMDLVLRKQADAYFLDKKFQQAAATYALTQISFEEVSLKFLQAKDTEALKIFLQKKMINLKNNDKTQLMMLVTWVMELYLNQLGE-HRDNGYDGGYENLQDEFRKFLNQNRVKNILEQNTHVAYELLSSHADTENMIFFAMLVHDYPRVIRHYIQQEDYKGALEVLKKEQTEYQSLFEQFSPTLIQHIPKQLVELWKQRN--LEPRRMIPSLVTQTESNNDESIRCAIDYLEHCVYKLKNEETAIHNYLVSLYCKIAEERP--LLQYLNSQGQDDQSVCYDLKYALRLCSENGKDQATVQIYCTMNLYEEAVDLALKVDIEKAKLYADKPEYDRALKKKLWLKVARHVVEQKQDVGKAMELLKECPLLKIEDVLPFFPDFVTIDHFKDAICESLQEYNHHIDQLKSDMQEATESAKVVRAEIHDIRNRYGAIDSQAKCSLCGFPLVTRAFYFFPCSHTFHADCLIEKVKENMTNNKRNRVEELVNTLRDLDMTSNNQTTNSQTSLAAKNSKTNRHTLQESLDELVSSECFFCGDVMIKSLDQPLIDDLEFEKQLDNW 975
            MA ++D+Y +    ++   P   +    +  +G+V  Q  + E PIF ++R  F P+ +I  + VS+N + + L  + + RID+   NE + +E+ +K    + K+ LD +G+HLLIA+ S EV Y+  + +K R L + K   +E VGWNK   TE STG IL+G+ +G I+E ++++ E        D    P  + N   G      +  +  ER    + R  V   T+ R +QF+G A+   E   F  +   ++ +P P+ E P +L  S+   + P+ +  P+ F W+ G GV +G LD  R     ++ ++ R+ + P  +      PL+I +T+FH +LL  +R EAVCTL  +    ++   + G +  +  D     +WA+TE  +F+Y +  E RDVW+ YLD   F+ AK YC+  P  +D VL ++AD  F  +++ ++A  YALTQ  FEE++LKFL+A+  EAL  FLQ+K+ +LK  ++TQ  +L TW+ ELYL++LG    D      Y   ++ FR FL+  R K  L  +    +ELL+SH DTE+M++FA+++ DY RV+ ++ Q E Y+ AL VL + +     LF +FSP LI+HIP+QLV+ W +    L+ R++IP+LV  ++    + +  AI Y+E CV  L   E AIHNYL+SLY   A  RP  LL YL   G     V YDLKYALRLC+E+G  +A V +Y  + LYEEAVDLAL+VD++ AK  AD PE D  L+KKLWLK+ARHVV++++DV  AM  L  CPLLKIEDVLPFFPDFVTIDHFK+AIC SL+ YNHHI +L+ +M+EAT SA+ +R ++ ++R RYG ++ Q KC+ C FPL+ R FY F C H FHADCL++ V+  +   K+ R+EEL   L      +       +    A  +  +R  L+  LDELV++EC +CG++MI+S+D+P ID   +E++  +W
Sbjct:    1 MASILDEYENSLSRSAVLQPGCPSVG--IPHSGYVNAQL-EKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTGSHLLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFEAELSASEGGLFGPAPDLYFRPLYVLNEEGG---PAPVCSLEAER--GPDGRSFVIATTRQRLFQFIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCGRPD---SLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFLEKFGPLKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEWLFASRASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDP--QLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEVQQVSQAIRYMEFCVNVLGETEQAIHNYLLSLY---ARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASCPLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQELRGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEQLSW 972

The following BLAST results are available for this feature:

BLAST of TCONS_00069372-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069372-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS18	0.000e+0	39.88	Vacuolar protein sorting-associated protein 18 hom...	[more]

You are here

TCONS_00069372-protein (polypeptide) - C. hemisphaerica