TCONS_00069411-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069411-protein
Unique NameTCONS_00069411-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069411-protein ID=TCONS_00069411-protein|Name=TCONS_00069411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
IINYYCFFFSKISKKEITKQWLVIFKKLFSSFHPLMCDFGALTLQEEQFC
KTIISVGEQFLFRIKTFSTPNSTVILFLPTNPRGRFLIHKCIETIPELTS
VSIGKSFQRRVVIFTITNRKLSKNSIKRRRGHTKSIHSPHFQRTMSSPRN
VKKKPDQAIYVPRHRRNGSPIAEDKNKHNKPTDDSNQKKKVRKQKDLKND
KKFESSEQELLSSSNKEHNLNEKEPLKRKISNENTINTEHVKNTKLILDC
AKCLAERLSQSIISDTYQNLRENAQHKKPKRKIPKVEVIVRQERVLPGIA
NNIVNLAIENAMQMITAIKIYDRKKEFNIDSAASLKSTQTEVASQNLPEV
KPDTDNKPTTEVEQAPCNDKVEDLDDKVTKEIKSTQKPVMETKKEAEIEI
LESKKETHGSEITTIDKELDAKPSKKKKTSNMVKKDESVRPSKSKSKKGK
KLKKQNNHEKENKDTDKSKKVVEIEPVVNGIDEKSLPGKKEIVNDQGAEE
QEGDDTLDDWDANWTEDGECLSEDMKKELSMLTGIDKPNIENAEGIDYLN
FTPTKNIELDQGEFGHIVEIFDFSPYLKNQDIFNAMNSAGIKDYNLTWVD
DTHALAVFGSQSAAHSAIKQYVPVLQMRQVVNGSRASKSKARDLKEVLLP
FKKRPESTGMVARNLVAGALGIRTNVSKEQRQKEKEILKEAREKRRKKKQ
DQKDVWENP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043261XLOC_043261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069411TCONS_00069411Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 681..701
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..510
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..369
IPR001374R3H domainGENE3D3.30.1370.50coord: 57..196
e-value: 2.3E-5
score: 23.7
IPR001374R3H domainPROSITEPS51061R3Hcoord: 47..117
score: 9.555
IPR001374R3H domainSUPERFAMILY82708R3H domaincoord: 67..115

Blast
[Close]
BLAST of TCONS_00069411-protein vs. Swiss-Prot (Human)
Match: R3HCL (Coiled-coil domain-containing protein R3HCC1L OS=Homo sapiens GN=R3HCC1L PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.412e-28
Identity = 75/215 (34.88%), Postives = 121/215 (56.28%), Query Frame = 0 
Query:  510 WDANWTEDGECLSEDMKKE-----------LSMLTGIDKPNIENAEGI-----DYLNFTPTKNIELDQGEFGHIVEIFDFSPYLKNQDIFNAMNSAGIKDYNLTWVDDTHALAVFGSQSAAHSAIKQYVPVLQMRQVVNGSRASKSKARDLKEVLLPFKKRPESTGMVARNLVAGALGIRTNVSKEQRQKEKEILKEAREKRRKKKQDQKDVWEN 708
            W++ + +DG+CL   + +E            S L+G    N ++ E I     DY N     +I+L   EF H++EI+DF      +D+     S   K +++ WVDDTHAL VF S   A  A+     ++++R +   +RA+K+KAR   E L P K+RPE++  +AR LV  ALG+R+  SK +R+ E + L+EARE++R + + ++D+WE 
Sbjct:  577 WESMFNDDGDCLDPRLLQEGILMHIKPENHCSELSG----NTKSRESIQEPRSDYYNHE-VPDIDLSDCEFPHVIEIYDFPQEFHTEDLLRVFCSYQKKGFDIKWVDDTHALGVFSSPITARDALGIKHTMVKIRPLSQATRAAKAKARAYAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELKKLQEARERKRLEAKQREDIWEG 786
The following BLAST results are available for this feature:
BLAST of TCONS_00069411-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
R3HCL6.412e-2834.88Coiled-coil domain-containing protein R3HCC1L OS=H... [more]
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