TCONS_00069688-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069688-protein
Unique Name	TCONS_00069688-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	871

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069688-protein ID=TCONS_00069688-protein|Name=TCONS_00069688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=871bp
MLLGGSRTKAEIKTKNKADFRLKRVDITTQESISQIKFTYDDESIWCYGP
DRGTKSNRPIILYEGEYLVRVSHERLYDYACAGALVEFETNKGRVFHYTP
GNSWRGYATGWKSETTTVKVENGMEIISLVIKRGILIGVEQQPIVEKNEG
QTKQKEWYVSCYSAGKEDIDLNHKDSKEKNEEVVFKHFDTKKEALKHWNE
LQRLVMKKKERGAMLVDCLSVKIVKQAGSEEIVKTCKEKAMEKGFYSKDE
SNQSIFKMIWLMYCTIMDTRDIFFFILSILLKSLNNLLDVHLQFIKGSIL
ALLVSTFNSGPLEGDIYVKLTCDYVYDCDSEDPLSVGRALLLAGCIVKFA
SILLEIGELYIEENLNSCRKLQMKRNILEHVSKLDQAFYDVHSTSHVTES
MSIESIYHLATESIPNMIQTVITILLNLFYIIKIDLYLGGFTVFISTFNT
TFIVRKFITKLQKSYKFEWKWDSALSDIKSKFTDNLKTTKMFSSEGKHLN
EYDQVNNECVSSLESKTVVLCFYVIFQEMTGFIAFAFSIYVFLGHLKEAK
LTSAEITSFFFLMQTFSSHFNWFFSQDEYIRQDIRDLDKFIRLKNQVPGM
IDGDEVIEDLKGEIIFEDVDFSYPSRPLEPVLKKFNLKIQPNKMTAIVGD
SGAGKSTIGNLIMRLYDPTSGKITVDGRDMKSLCLQKLHEKMGIVTQNPD
LMEGTLEENIGYGSVEDFCSRKDVERAAQLAKCDFIDKFRSGYDTYAGGS
GMQLSGGQKQRLAIARAIIRNPKILVLDEATSSLDAKNEKEVQEALENVM
DSQTVVVIAHRLSTIKNADNIVCMKDGTIVEQGTHDELMKTKGTYFDLIS
KQLVSAEQTKTSDESDKHESG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043393	XLOC_043393	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069688	TCONS_00069688	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003439	ABC_transporter-like
IPR011527	ABC1_TM_dom
IPR017871	ABC_transporter_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 641..828 e-value: 3.8E-15 score: 66.3
None	No IPR available	GENE3D	1.20.1560.10		coord: 248..584 e-value: 9.1E-23 score: 80.2
None	No IPR available	GENE3D	3.40.50.300		coord: 600..858 e-value: 5.5E-74 score: 248.3
None	No IPR available	GENE3D	2.100.10.30		coord: 2..157 e-value: 1.1E-6 score: 27.9
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 632..782 e-value: 9.5E-34 score: 116.7
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 614..851 score: 25.284
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 347..567 e-value: 1.8E-7 score: 31.0
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 299..576 score: 14.915
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 271..580
IPR017871	ABC transporter, conserved site	PROSITE	PS00211	ABC_TRANSPORTER_1	coord: 754..768
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 606..853

Blast

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BLAST of TCONS_00069688-protein vs. Swiss-Prot (Human)
Match: ABCB8 (ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 4.645e-71
Identity = 173/552 (31.34%), Postives = 283/552 (51.27%), Query Frame = 0

Query:  353 LLEIGELYIEENLNSCRKLQMKRNILEHVSKLDQAFYDVHSTSHVTESMSIE------SIYHLATESIPNMIQ--------TVITILLNLFYIIKIDLYLGGFTVFISTFNTTFIVRKFITKLQKSYKFEWKWDSALSDIKSKFTDNLKTTKMFSSEGKHLNEYDQVNNECVSSLE--SKTVVLCFYVIFQEMTGFIAFAFSIY--VFLGH--LKEAKLTSAEITSFFFLMQTFS---SHFNWFFSQDEYIRQDIRDLDKFIRLKNQVPGMIDGDEVI--EDLKGEIIFEDVDFSYPSRPLEPVLKKFNLKIQPNKMTAIVGDSGAGKSTIGNLIMRLYDPTSGKITVDGRDMKSLCLQKLHEKM-GIVTQNPDLMEGTLEENIGYGSVEDFCSRKDVERAAQLAKC-DFIDKFRSGYDTYAGGSGMQLSGGQKQRLAIARAIIRNPKILVLDEATSSLDAKNEKEVQEALENVMDSQTVVVIAHRLSTIKNADNIVCMKDGTIVEQGTHDELMKTKGTYFDLISKQLVSAEQTKT-------SDESDKHES 870
            LL  G L +  ++     + M+R +   + + D  F+D + T  +   ++ +      S   + ++ + +  Q        ++++  L L  ++     +G  T+  S       +RK   + Q+         +    +  +   N++T + F+ E +    Y      C    E   + + L     FQ ++  IAF   +   +F+G   +   +LT  ++ SF    QT     ++ +  F Q          + +++ L   +P  + G   +  E L+G + F++V FSYP RP   VLK F L + P K+ A+VG SG GK+T+ +L+ R YDPT+G + +DGRD+++L    L  ++ G ++Q P L   T+ ENI +G +E   S ++V  AA+ A   +FI  F  GY+T  G  G  LSGGQKQRLAIARA+I+ P +L+LDEATS+LDA++E+ VQEAL+     +TV+VIAHRLST++ A  IV M DG + E GTH+EL+K  G Y +LI +Q + A +T            S +H+S
Sbjct:  207 LLTFGYLVLLSHVGERMAVDMRRALFSSLLRQDITFFDANKTGQLVSRLTTDVQEFKSSFKLVISQGLRSCTQVAGCLVSLSMLSTRLTLLLMVATPALMGVGTLMGSG------LRKLSRQCQEQI-------ARAMGVADEALGNVRTVRAFAMEQREEERYGAELEACRCRAEELGRGIAL-----FQGLSN-IAFNCMVLGTLFIGGSLVAGQQLTGGDLMSFLVASQTVQRSMANLSVLFGQVVRGLSAGARVFEYMALNPCIP--LSGGCCVPKEQLRGSVTFQNVCFSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLE--ASDEEVYTAAREANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWEAGTHEELLKKGGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQHKS 735

The following BLAST results are available for this feature:

BLAST of TCONS_00069688-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCB8	4.645e-71	31.34	ATP-binding cassette sub-family B member 8, mitoch...	[more]

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TCONS_00069688-protein (polypeptide) - C. hemisphaerica