TCONS_00069700-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069700-protein
Unique NameTCONS_00069700-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069700-protein ID=TCONS_00069700-protein|Name=TCONS_00069700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
IRTRLKHLSTTLNKKKLANPPKMEFENLQIEVPVNDESSPMFAAKIYEKK
YHNKKDFVVGFNPNDKEFIDKKNRRAKRFGIKEREKQAQAQQLQDETTST
GEEAEPIATDDGDSTNTVTTIGNEQPKKATTNFDSSFFKDVDLKKINWPP
VLDCALDQMRLDAIHIYGVDNMSTKNIFAYFDLFGPDTLEWIDDRSCNVI
WDDEATVSKVMESMSKTYKSIKEIQKEHREEMASSMSPTITTQTQQTSED
GVTIKVEEGEESEQESGETGNKAISIEDDEDDIDPRDVWRLGYPYQEYQL
FMRPATMSDKKLPGAASRSQYYLMYGKNEDKKKVKGIVSKSRKRKLESMK
QKADEVFKLKEPDVKIVALDELLNEGVVSKMEVDEDEPTIKRMNIQTDTF
DPRSRTMMADRVEIGQQFGKRIDDGYWTGASAVRDRLGLRNDDTMDDPHR
VNDLRARLDKSNSIYDRLGRRGGDSTKTEEMEDARGEIERSKRTNAAKSK
RRYREDGYEKDGVYHDIYRAEDASDIKEEPLDDSPPPRYHHRRPRSDEEE
EREPPRRSNIKSRLGTVNTSSSGSTDLRDRLEKRRGGGVDKNDKNSRKDH
RKRYEEEPDIKDEPIDNDRLNLCIEIKQEPEEDMDFEF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043402XLOC_043402Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069700TCONS_00069700Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019416NCBP3
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0000340RNA 7-methylguanosine cap binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding
molecular_function GO:0000340 RNA 7-methylguanosine cap binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 481..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 257..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 520..619
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 465..505
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..126
IPR019416Nuclear cap-binding protein subunit 3PFAMPF10309NCBP3coord: 160..211
e-value: 8.7E-18
score: 63.8

Blast
[Close]
BLAST of TCONS_00069700-protein vs. Swiss-Prot (Human)
Match: NCBP3 (Nuclear cap-binding protein subunit 3 OS=Homo sapiens GN=NCBP3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.406e-22
Identity = 71/221 (32.13%), Postives = 116/221 (52.49%), Query Frame = 0 
Query:  151 VLDCALDQMRLDAIHIYGVDNMSTKNIFAYFDLFGPDTLEWIDDRSCNVIWDDEATVSKVMESMSKTY-------------KSIKEIQKEHREEMASSMSPTITTQTQQTSEDGVTIKVEEGEESEQESGETGNKAISIEDDEDDIDPRDVWRLGYPYQEYQLFMRPATMSDKKLPGAASRSQYYLMYGKNEDKKKVKGIVSKSRKRKLESMKQKADEVFK 358
            ++  A+ ++RL+ I+I GVD MST+++F+YF  + P  +EW+DD SCNV+W DE T ++ + +MS                KS ++ +K+ +E+ +            + S D   ++++   + E+ES              +D+ P +    G      +LFMR AT  DKK  GAA RSQYY+ YG N +   +KGI+S S KR+  S + + D + K
Sbjct:  115 MMKKAIPKVRLETIYICGVDEMSTQDVFSYFKEYPPAHIEWLDDTSCNVVWLDEMTATRALINMSSLPAQDKIRSRDASEDKSAEKRKKDKQEDSSDDDEAEEGEVEDENSSD---VELDTLSQVEEESLL-----------RNDLRPANKLAKG-----NRLFMRFATKDDKKELGAARRSQYYMKYG-NPNYGGMKGILSNSWKRRYHSRRIQRDVIKK 315
The following BLAST results are available for this feature:
BLAST of TCONS_00069700-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCBP31.406e-2232.13Nuclear cap-binding protein subunit 3 OS=Homo sapi... [more]
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