TCONS_00069731-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00069731-protein
Unique NameTCONS_00069731-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00069731-protein ID=TCONS_00069731-protein|Name=TCONS_00069731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp
DPNYPSKNLLKSGKWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCY
VDILVRHSLKGNDFKSLIPTFTFMSVPESKSGENKCKVEMFKQDRMMADV
RDEKWDVLKIVCRQPYKPNAQYGISFVNVRGCSSGTNQAKDVKAKPPQPS
NQSALNSFFGFNNTGLVSPKPGKTLALKSKSPILKSPHQVMLTKTKVTNE
IQESPTKYSSEKLKFLNDAEEFLYRAGFDEAIKLGKPILMAEYREMIEKE
RGQKLSRQQKKLLVYIATEMKKTLQAEKNNAKISSTPPNMNSLERECTKC
EVSFSIEVMEIHEQICTATPRTKPRQNRKSICFDYTMSDEDKSIQSFNKR
KPSMSTKLTSAGETSASSASSSPESRWYGKTIPKSSGSNITTTPKSSGST
ATITLKSSSKLFARKRSGSTSKAAKAKLPEPVNLPIIDTHVSKTGRDSPI
SKKLFLDHNQNENVKSNNNSDDFFDDMNLSDFEDDTTNNDDDLVVTKDTN
FKRDNFQNSISINDDDDDIIISKEKNNSHNTQYVECPMCFELMSTTIIEL
HASTCNGKTETTPQTFNNKPSSNAFAATPYLSSVNRQANKMGSNASTVSP
NLSTTNGSLENHQHQGDTQECPVCNKQINKYKIAVHVVLCTGKGLDNDKE
DDDLPSIFNRKSSSTSATKTKTSKKSSSTNASPSPSGAHNVMSVMHKPSG
SHNAMNTFQNTNNTGASYNPSGAHNTPTNSILVPDHDYGKREEASCPICS
ITLDKSMIEVHVNMCLDRLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043418XLOC_043418Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00069731TCONS_00069731Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002706Xrcc1_N
IPR008979Galactose-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0000012single strand break repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003684damaged DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000012 single strand break repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003684 damaged DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002706DNA-repair protein Xrcc1, N-terminalPFAMPF01834XRCC1_Ncoord: 1..128
e-value: 5.4E-38
score: 130.3
NoneNo IPR availableGENE3D3.10.390.10coord: 278..361
e-value: 0.014
score: 15.2
coord: 518..598
e-value: 0.034
score: 13.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 644..713
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..402
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 589..618
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 1..131
e-value: 1.1E-38
score: 132.1
IPR008979Galactose-binding domain-likeSUPERFAMILY49785Galactose-binding domain-likecoord: 1..130

Blast
[Close]
BLAST of TCONS_00069731-protein vs. Swiss-Prot (Human)
Match: XRCC1 (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.788e-20
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0 
Query:    6 SKNLLKSG---KWLCDRNNPHQSAEVEISFSRATTIHFIDIGNSGSCYVDILVRHSLKG---NDFKSLIPTFTFMSVPESKSGENKCKVEMFKQDRMMADVRDEKWDVLKIVCRQPYKPNAQYGISFVN 128
            ++NLLK+    KW   +    ++  V +   +   IH +DIGN GS +V++LV  S  G    D++ L+ T +FMS  ES+SG N  +V MF  D+++    +++WD +KIVC QPY  ++ +G+SFV 
Sbjct:   21 AENLLKADTYRKWRAAKAG-EKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVR 148
The following BLAST results are available for this feature:
BLAST of TCONS_00069731-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XRCC12.788e-2037.21DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 ... [more]
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