TCONS_00070115-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070115-protein
Unique NameTCONS_00070115-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070115-protein ID=TCONS_00070115-protein|Name=TCONS_00070115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp
MNEEEVDVNLFAPDGDEDDFENGDSGHDQININSKFALVSPNASEYTCLV
KKVQDLIEEGQGETIYEIGVDEKGESGLNDEDFKASIATLQSIAEQLNCQ
INMLREKDIETRKTAEFLIRGNLVEEDFSEVRVAVVGNVDAGKSTLLGVL
THGSLDDGRGTARLKLFRHKHEAETGRTSSVGNDILGFDSKGDIVNKPDK
HSGALDWTQICKESSKVVTFIDLAGHEKYLKTTVFGMTGHAPDFAMLMVG
SNAGIVGMTKEHLGLALALNVPVFVAVTKIDMCPPNVLQETMKLLCRILK
SPGCRKIPVIVSNKDDVIVSATNFSSERICPIFQISNVTGENLDLLKGFL
NLLSVRGQYVSSKPPLFQIDDTYSVSGVGTVVSGTTMQGVIRLNDILLLG
PDSTGAFQPVPIKSIHRKRLPVKEVRAGQTASFSMKKIKRQDIRKGMVLA
GQDLEPRATWEFDADVLVLHHPTTISAKYQAMVHCGSLRQTATIVRMDKE
HLRTGDKASCRFRFMKSAEYITIGTKMIFREGRTKAVGTITKLHEEVAGR
STHNTRQNKQFKALMHQRGKGGNRKTPAQNKPPQAAAAAATASAK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043652XLOC_043652Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070115TCONS_00070115Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004161EFTu-like_2
IPR000795TF_GTP-bd_dom
IPR009000Transl_B-barrel
IPR027417P-loop_NTPase
IPR009001Transl_elong_EF1A/Init_IF2_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableGENE3D2.40.30.10coord: 458..543
e-value: 6.8E-15
score: 55.1
NoneNo IPR availableGENE3D3.40.50.300coord: 126..360
e-value: 6.6E-23
score: 80.5
NoneNo IPR availableGENE3D2.40.30.10coord: 361..451
e-value: 1.3E-24
score: 85.9
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 132..347
e-value: 1.4E-22
score: 80.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 566..595
NoneNo IPR availableCDDcd03708GTPBP_IIIcoord: 457..543
e-value: 1.42781E-49
score: 166.531
NoneNo IPR availableCDDcd03694GTPBP_IIcoord: 365..450
e-value: 3.94588E-43
score: 148.522
NoneNo IPR availableCDDcd04165GTPBP1_likecoord: 132..356
e-value: 3.60788E-146
score: 423.625
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 379..449
e-value: 2.6E-8
score: 34.1
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 128..359
score: 41.212
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 362..451
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 131..380
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 460..543

Blast
[Close]
BLAST of TCONS_00070115-protein vs. Swiss-Prot (Human)
Match: GTPB1 (GTP-binding protein 1 OS=Homo sapiens GN=GTPBP1 PE=1 SV=3)

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 373/587 (63.54%), Postives = 463/587 (78.88%), Query Frame = 0 
Query:   16 DEDDFENGDS--GHDQININSKFALVSPNASEYTCLVKKVQDLIEEGQGETIYEIGVDEKG-ESGLNDEDFKASIATLQSIAEQLNCQINMLREKDIETRKTAEFLIRGNLVEEDFSEVRVAVVGNVDAGKSTLLGVLTHGSLDDGRGTARLKLFRHKHEAETGRTSSVGNDILGFDSKGDIVNKPDKHSGALDWTQICKESSKVVTFIDLAGHEKYLKTTVFGMTGHAPDFAMLMVGSNAGIVGMTKEHLGLALALNVPVFVAVTKIDMCPPNVLQETMKLLCRILKSPGCRKIPVIVSNKDDVIVSATNFSSERICPIFQISNVTGENLDLLKGFLNLLSVRGQYVSSKPPLFQIDDTYSVSGVGTVVSGTTMQGVIRLNDILLLGPDSTGAFQPVPIKSIHRKRLPVKEVRAGQTASFSMKKIKRQDIRKGMVLAGQDLEPRATWEFDADVLVLHHPTTISAKYQAMVHCGSLRQTATIVRMDKEHLRTGDKASCRFRFMKSAEYITIGTKMIFREGRTKAVGTITKLHEEVAGRSTHNTRQNKQF----KALMHQRGKGGNRKTPAQNKPPQAAAAAATASAK 595
            D D  E+G++  G  ++++ SK  LVSP + +Y  L++++ + ++EG GETIY IG    G E GL++ D +AS AT++S+AEQ+   + +LRE+     +  ++L+R  + + DF EVRVAVVGNVDAGKSTLLGVLTHG LD+GRG AR KLFRHKHE E+GRTSSVGNDILGFDS+G++VNKPD H G+L+WT+IC++S+KV+TFIDLAGHEKYLKTTVFGMTGH PDF MLMVGSNAGIVGMTKEHLGLALALNVPVFV VTKIDMCP N+LQET+KLL R+LKSPGCRKIPV+V +KDDVIV+A+NFSSER+CPIFQISNVTGENLDLLK FLNLLS R  Y   +P  FQIDDTYSV GVGTVVSGTT++G+I+LND LLLGPD  G F  + +KSIHRKR+PVKEVR GQTASF++KKIKR  IRKGMV+    L P+A+WEF+A++LVLHHPTTIS +YQAMVHCGS+RQTATI+ MDK+ LRTGDKA+  FRF+K+ EY+ I  +++FREGRTKAVGTITKL +       ++  Q  +     K  + +R +GG    PA   PP    A++  + +
Sbjct:   43 DSDCSEDGEALNGEPELDLTSKLVLVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRTSYREEEPAEFQIDDTYSVPGVGTVVSGTTLRGLIKLNDTLLLGPDPLGNFLSIAVKSIHRKRMPVKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLNPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGDKATVHFRFIKTPEYLHIDQRLVFREGRTKAVGTITKLLQTTNNSPMNSKPQQIKMQSTKKGPLTKRDEGGPSGGPAVGAPPPGDEASSVGAGQ 629
The following BLAST results are available for this feature:
BLAST of TCONS_00070115-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTPB10.000e+063.54GTP-binding protein 1 OS=Homo sapiens GN=GTPBP1 PE... [more]
back to top