TCONS_00070117-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070117-protein
Unique NameTCONS_00070117-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070117-protein ID=TCONS_00070117-protein|Name=TCONS_00070117-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILE
AGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFC
ELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRN
LEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQAL
DLFSNELEALPEVIFQLKKLTRLDLDRNNFNMSLADVPKITPGINYPERD
PKLKNNWRGRTRQVQMDNTEVIEYKDEGEEDTIVEEEWNYQALRTAMHRG
MSFWRSHTNPNERRRPTGSKANSVTITEESEPRFDDDSENLIITPSNEQI
IITKQNGSFSTAFDPNEEDWDEEIKINTEYKSILLTCDERQISNKETPLT
DFQKFVNQYPPAKQCFSSTGFYESFVHVKKNRENVKTSFNSGDTNVFIVE
GQFDDAD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043653XLOC_043653Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070117TCONS_00070117Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 125..147
e-value: 1.2
score: 18.2
coord: 194..217
e-value: 5.4
score: 15.5
coord: 148..171
e-value: 0.019
score: 24.1
coord: 102..124
e-value: 390.0
score: 0.2
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 171..190
e-value: 130.0
score: 5.2
coord: 125..144
e-value: 170.0
score: 4.4
coord: 102..121
e-value: 110.0
score: 5.6
coord: 194..213
e-value: 220.0
score: 3.5
coord: 148..167
e-value: 34.0
score: 9.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..339
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 2..80
e-value: 4.5E-8
score: 31.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 152..299
e-value: 1.3E-21
score: 75.9
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 81..151
e-value: 1.0E-14
score: 53.5
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 4..232
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 109..161
e-value: 1.7E-7
score: 30.8
coord: 173..230
e-value: 2.4E-7
score: 30.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 45..66
score: 5.694
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 150..171
score: 7.211
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 127..148
score: 7.05
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 219..241
score: 5.409
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 173..194
score: 5.302
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 196..217
score: 6.626

Blast
[Close]
BLAST of TCONS_00070117-protein vs. Swiss-Prot (Human)
Match: LRRC1 (Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.000e-25
Identity = 76/228 (33.33%), Postives = 114/228 (50.00%), Query Frame = 0 
Query:    1 MAENNTFKYFPFWFCDLPKIEEMYLSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRN 228
            + + N  +  P  F  L K+ ++ LSDN +   P +    +N   L  L+   N +  I E       L+   F             +GN + +LP+SF EL++L   ++N+  L  LPE  G L +L  L+L +N++ +LP +  +LR LE L L  N++  LPE IG    L +L LD N L  +P  +G +K L  LD+  N LE LPE I  L  LT L + +N
Sbjct:   42 LLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPE---IANFMQLVELDVSRNEIPEIPESISFCKALQVADF-------------SGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQN 253

HSP 2 Score: 98.2117 bits (243), Expect = 6.129e-22
Identity = 72/219 (32.88%), Postives = 114/219 (52.05%), Query Frame = 0 
Query:   25 LSDNSVTLEPFDDEFCSNAPNLRILEAGANYMSSISEKFGLLSKLEQVHFGSTIPELERSHFQNGNWMVKLPDSFCELKHLNKANINENQLNCLPERFGELESLTWLDLGQNMIRHLPSTFCELRNLEFLQLSKNQLEELPEEIGNFQKLIELRLDNNVLKAVPDSLGTIKGLQALDLFSNELEALPEVIFQLKKLTRLDLDRNNFNMSLADVPKITPG 243
            LS N ++L+   +    N  NL  LE   N ++ + +    L +LE++  G+             N +  LP+S   L HL    ++ NQL+ LP+  G L++L  LD+ +N +  LP     L +L  L +S+N LE +P+ IG  +KL  L++D N L  +P+++G  + L  L L  N+L  LP+ I +LKKL+ L+ DRN     L  +PK   G
Sbjct:  133 LSVNDISLQSLPENI-GNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGN-------------NEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTENQLLTLPKSIGKLKKLSNLNADRN----KLVSLPKEIGG 333
The following BLAST results are available for this feature:
BLAST of TCONS_00070117-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC16.000e-2533.33Leucine-rich repeat-containing protein 1 OS=Homo s... [more]
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