TCONS_00070300-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070300-protein
Unique NameTCONS_00070300-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070300-protein ID=TCONS_00070300-protein|Name=TCONS_00070300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSRKRVLQQQLTNIIMRVLCRHPELHYYQGYHDIAVTLLRVVGEELAFSL
LEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTI
FALSWLITWFGHDVNSFETIVRLCDFFLATHPVMPVYVSVVLVRNHKTQV
LQQECDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043778XLOC_043778Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070300TCONS_00070300Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.270coord: 1..54
e-value: 2.6E-9
score: 36.7
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 3..150
e-value: 4.5E-25
score: 88.5
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..131
score: 18.29
IPR000195Rab-GTPase-TBC domainSUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 5..88
IPR000195Rab-GTPase-TBC domainSUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 67..153

Blast
[Close]
BLAST of TCONS_00070300-protein vs. Swiss-Prot (Human)
Match: TBC20 (TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.478e-50
Identity = 75/137 (54.74%), Postives = 103/137 (75.18%), Query Frame = 0 
Query:   21 RHPELHYYQGYHDIAVTLLRVVGEELAFSLLEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTIFALSWLITWFGHDVNSFETIVRLCDFFLATHPVMPVYVSVVLVRNHKTQVLQQECDI 157
            R+P+LHYYQGYHDI VT L VVGE LA SL+E+LST+H+RDFMD  M+ T  +L+    ++ +V+ +L  F+  ++VGTIFALSWLITWFGH ++ F  +VRL DFFLA HP+MP+Y + V+V   + +VL  +CD+
Sbjct:  136 RNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDM 272
The following BLAST results are available for this feature:
BLAST of TCONS_00070300-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBC201.478e-5054.74TBC1 domain family member 20 OS=Homo sapiens GN=TB... [more]
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