TCONS_00070385-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070385-protein
Unique NameTCONS_00070385-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070385-protein ID=TCONS_00070385-protein|Name=TCONS_00070385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1282bp
MKEESLFRVFVGGLAPEVKEEELRDRFKSFGTTSDVCLFQKKTSDGVISK
TFGYVNLTTTEQQLRKCFAIFGGTKWKGHSLKVQLAKDDFMKRLQKEWEN
PEPVKISKSRKRKQIDPIRSYEEYIAKSKSTKKAIPGIPLEGEKNWVIGK
FGRPLPIVHINGKGSGRKFLKHDPSKHCHCIRRIATDVPEDRIDGLTWEL
DECQHLQDRIIRNKSITKKKDIANGVVELDGVDEEKESPKKKKKKKKASL
ESMEDVVNENERDTALLKTKDLNGNDSEELCNGAGELENDFEIASCENIE
DKSDNESMEISSNINNISEDKESEESSESEDEEVLVNGTLKNIGDEPEDN
GVSISSESEVDSEDEEDSQSDSGTIPGQPTFHTTSMIASTPFVVPCVKKN
LRENPGDNIVATPKVAHNNSSLGKSIIEQLKSRSMAEPSTTGTPLPESKD
SNVDSGSESEGERTNNFFDFDINDMNKGPKSNGGVSSSNESDESTDDSEG
EEPINLFDFEFENLKGKQGTEFLSSFELRWEKEDVGEDSSGESSSEDSET
DSDKSPKASKEGEKAVPEASSDEPVESESPQEDNAEPVKKKKKKSRKDTE
DEQEEISETKSSSKKKKKEKESTLSSNDIDENLKLNLEIDESATQEMKSK
KKKKKTEKENENETEESTASTKKEKRKKKKEKSACESQVKHHKPQDSEQL
RQKSVEAHNQRTQQNKELIQNALRGLDTKDSSSANNKIRFSDTDDDDDEV
TFQNLTTNEASSKNDSDDKGTKTKSNKDEKKSALWDGDSDESDDGGTMTR
TKHKDEKTVDFLGDENDEDDEDEDENRFSVKPQFQGEHGKKLFKMQMHYG
GDDRFRMDERFAEDDNGGDTDSEDEGXDESDDGGTMTRTKHKDEKTVDFL
GDENDEDDEDEDENRFSVKPQFQGEHGKKLFKMQMHYGGDDRFRMDERFA
EDDNGGDTDSEDEGEKSENKKRSIEREDEETKNLNAEEEKERNMSVLESI
LGKSLKHNKSKKELKKELIATSANPYQRYDPTKSDHTELEVEKEEKPSNS
KKLNETSVGEKDVEEDEANPVPEVSKERFYKVETSLKSLFSGTATAAESE
DKPAPAFTFLSAAPTNDDEEDDSGKVVNNTMDVDDDDGEDEETVDKAKPI
KELSWKKGLREDRDNRDVSMENEKEEESEEKTKEGEGKSSSAGGFFFFKE
NDERLLKGASFMRSEGLEEITKQWEDIRQGLREDFRKKHKDAVRRVRKMK
ERKRVPNNSGGISNNGIHATLFQRSSNIIWTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043838XLOC_043838Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070385TCONS_00070385Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034138NOP8_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 967..994
NoneNo IPR availableCOILSCoilCoilcoord: 646..666
NoneNo IPR availableCOILSCoilCoilcoord: 243..263
NoneNo IPR availableCOILSCoilCoilcoord: 1232..1252
NoneNo IPR availableGENE3D3.30.70.330coord: 1..105
e-value: 5.4E-13
score: 48.5
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..84
e-value: 9.3E-9
score: 45.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..74
e-value: 7.2E-6
score: 25.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..88
score: 12.015
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 6..98
IPR034138Nucleolar protein 8, RNA recognition motifCDDcd12226RRM_NOL8coord: 8..87
e-value: 7.58241E-27
score: 105.332

Blast
[Close]
BLAST of TCONS_00070385-protein vs. Swiss-Prot (Human)
Match: NOL8 (Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.164e-37
Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 0 
Query:    8 RVFVGGLAPEVKEEELRDRFKSFGTTSDVCLFQKKTSDGVISKTFGYVNLTTTEQQLRKCFAIFGGTKWKGHSLKVQLAKDDFMKRLQKEWENPEPVKISKSRKRKQIDPIRSYEEYIAKSKSTKKAIPGIPLEGEKNWVIGKFGRPLPIVHINGKGSGRKFLKHDPSKHCHCIRRIATD----VPEDRIDGLTWELD 201
            R++VGGL+ ++ E +L+++F  FG  SDV +  +K   G   K F Y+N++  E  L+KC ++   TKWKG +L++QLAK+ F+ RL +E E       +K++K +      +  E         KA+PG  + G KNWV+ KFGR LP++H+  +   RK +K+DPSK+CH +++I  D    +P   I  LTWEL+
Sbjct:    9 RLYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKKCMSVLNKTKWKGGTLQIQLAKESFLHRLAQERE------AAKAKKEESTTGNANLLEKTGGVDFHMKAVPGTEVPGHKNWVVSKFGRVLPVLHLKNQHK-RKIIKYDPSKYCHNLKKIGEDFSNTIP---ISSLTWELE 196

HSP 2 Score: 113.235 bits (282), Expect = 4.312e-25
Identity = 123/355 (34.65%), Postives = 174/355 (49.01%), Query Frame = 0 
Query:  914 NRFSVKPQFQGEHGKKLFKMQMHYGGDDRFRMDERFAEDDNGGDTDSEDEGEKSENKKRSIEREDEETKNLNAEEEKERNMSVLESILGKSLKHNKSKKELK----KELIATSANPYQRYDPTKSDHTELEVEKEEKPSNSKKLNETSVGEKDVEEDEANPVPEVSKERFYKVETSLKSLFSGTATAAESED---------KPAPAFTFLSAAPTNDDEEDDSGKVVNNTMDVDDDDGED--EET--VDKAKPIKELSWKKGLREDRDNRDVSMENEKEEESEEKTKEGEGKSS----SAGGFFFFKENDERLLKGASFMRSEGLEEITKQWEDIRQGLREDFRKKHKDAVRRVR 1247
            NRF +KPQF+G  G+KL  +Q H+G DDRFRMD RF E      TDSE+E E+   KK          +     EEK++ ++V++S+L  +L ++ ++  +     K++I         YDPTK DH   E ++++KP  SK        ++  + +EA  +PEVSKE +Y +   LK +F  T   +E E+         K  P      AA T+D E+  SG     T    D D +D  EET  V+  KP K + W+    ED   +D S E E   E  +      G++S        FFFF +NDERL     F R  G       WE     LR D RKKHKDA R+++
Sbjct:  850 NRFKIKPQFEGRAGQKLMDLQSHFGTDDRFRMDSRFLE------TDSEEEQEEVNEKK--------TAEEEELAEEKKKALNVVQSVLQINLSNSTNRGSVAAKKFKDII--------HYDPTKQDHATYERKRDDKPKESKA-------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTKYTSEKEEGTPWNEDCGKEKPEEIQDPAALTSDAEQ-PSG----FTFSFFDSDTKDIKEETYRVETVKPGK-IVWQ----EDPRLQDSSSEEEDVTEETDHRNSSPGEASLLEKETTRFFFFSKNDERLQGSDLFWRGVGSNMSRNSWEARTTNLRMDCRKKHKDAKRKMK 1165
The following BLAST results are available for this feature:
BLAST of TCONS_00070385-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOL81.164e-3737.88Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 S... [more]
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