TCONS_00070484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070484-protein
Unique NameTCONS_00070484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070484-protein ID=TCONS_00070484-protein|Name=TCONS_00070484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MKNNLSFSIERILQNVKSTETSEDIEKELTQTQPLLYLHHTQPVLIVQAS
GQGYRQTQALHYGDKEETVDREEECTCEKATIETKQLKGRRLGHPYTSRA
SPKRRAFRHTFTPYQVVQLEKLFEQSRYLSSSERMRMSRELKMTDNQLKT
WYQNRRTKLKREITEMYDQQRIKHSFFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043882XLOC_043882Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070484TCONS_00070484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 141..151
score: 39.86
coord: 151..160
score: 67.31
coord: 126..137
score: 33.06
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 104..166
e-value: 1.5E-16
score: 70.9
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 107..161
e-value: 5.3E-17
score: 61.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 102..162
score: 17.977
NoneNo IPR availableGENE3D1.10.10.60coord: 64..163
e-value: 1.8E-18
score: 65.9
NoneNo IPR availableCDDcd00086homeodomaincoord: 108..162
e-value: 3.68452E-13
score: 59.9497
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 137..160
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 94..161

Blast
[Close]
BLAST of TCONS_00070484-protein vs. Swiss-Prot (Human)
Match: TLX3 (T-cell leukemia homeobox protein 3 OS=Homo sapiens GN=TLX3 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.467e-22
Identity = 40/82 (48.78%), Postives = 60/82 (73.17%), Query Frame = 0 
Query:   90 RRLGHPYTSRASPKRRAFRHTFTPYQVVQLEKLFEQSRYLSSSERMRMSRELKMTDNQLKTWYQNRRTKLKREITEMYDQQR 171
            RR+GHPY +R  PKR+  R +F+  Q+ +LEK F + +YL+S+ER  +++ LKMTD Q+KTW+QNRRTK +R+  E  + +R
Sbjct:  152 RRIGHPYQNRTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAER 233
The following BLAST results are available for this feature:
BLAST of TCONS_00070484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TLX33.467e-2248.78T-cell leukemia homeobox protein 3 OS=Homo sapiens... [more]
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