TCONS_00073315-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073315-protein
Unique NameTCONS_00073315-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073315-protein ID=TCONS_00073315-protein|Name=TCONS_00073315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIG
FNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRL
SEAKNELHKLLEEEDLKEAHVLVFANKQDVLGALNVNDVKAGLGLAELTM
HNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQFLNRKMF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045483XLOC_045483Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073315TCONS_00073315Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..120
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 18..166
e-value: 0.003
score: -69.1
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..181
e-value: 1.1E-89
score: 314.0
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 3..177
e-value: 5.8E-22
score: 89.0
NoneNo IPR availableGENE3D3.40.50.300coord: 4..183
e-value: 4.2E-46
score: 156.0
NoneNo IPR availableCDDcd00878Arf_Arlcoord: 19..176
e-value: 6.40381E-90
score: 262.127
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 74..99
score: 32.13
coord: 119..140
score: 24.6
coord: 19..42
score: 48.04
coord: 47..71
score: 33.41
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 8..177
e-value: 6.8E-69
score: 230.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 18..138
e-value: 8.1E-22
score: 75.7
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 11..177
score: 23.028
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..181

Blast
[Close]
BLAST of TCONS_00073315-protein vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.363e-78
Identity = 107/181 (59.12%), Postives = 143/181 (79.01%), Query Frame = 0 
Query:    1 MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIGFNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRLSEAKNELHKLLEEEDLKEAHVLVFANKQDVLGALNVNDVKAGLGLAELTMHNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQ 181
            MGN F   F+ LFG  E+RILMVGLD AGKTTILYK +L E V+T+PTIGFNVETV+YKNI+FTVWD+GGQDKIR LWR Y + + GLIFVVDS+D++R++EA+ EL ++L E++L++A +LVFANKQD+  A+N  ++   LGL  L   NW+IQ T A  G+GL++GLDWL+ Q+++ +
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00073315-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF12.363e-7859.12ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
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