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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000008 ID=TCONS_00000008|Name=TCONS_00000008|organism=Clytia hemisphaerica|type=transcript|length=2981bpRun BLAST on NCBI protein sequence of TCONS_00000008-protein >TCONS_00000008-protein ID=TCONS_00000008-protein|Name=TCONS_00000008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp MSQNGVIQPLLTDFYQISMAYAYWDNKKMNDHAVFDLFFRKNPFKGEFTIRun BLAST on NCBI transcript from alignment at sc0000001:135795..144660+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000008 ID=TCONS_00000008|Name=TCONS_00000008|organism=Clytia hemisphaerica|type=transcript|length=8866bp|location=Sequence derived from alignment at sc0000001:135795..144660+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000001:135795..144660+ >TCONS_00000008 ID=TCONS_00000008|Name=TCONS_00000008|organism=Clytia hemisphaerica|type=CDS|length=21021bp|location=Sequence derived from alignment at sc0000001:135795..144660+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000008 vs. Swiss-Prot (Human)
Match: PNCB (Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT PE=1 SV=2) HSP 1 Score: 468.003 bits (1203), Expect = 4.563e-153 Identity = 231/528 (43.75%), Postives = 330/528 (62.50%), Query Frame = 3
Query: 42 QPLLTDFYQISMAYAYWDNKKMNDHAVFDLFFRKNPFKGEFTIFAGLSECINYVKNFKFSEDDIEYLVKVMPESTDPEFFTFLKNLTTNEVTISAIPEGTVVFAKVPLIRVEGPLAVVQLLETTLLNLVNFASLVATNAARFRHASGEDKLLLEFGLRRAQGPDGGLSASKYCYLGGFDGTSDVLAAKKFNIPVKGTHAHAFVSSFHKADDVSQFHKLLNKNSQQNESLLPTVEKKLQEVADIFKISKDQVNQGELMAFTAYASSFPSYFLALIDTYDTLKSGCINFLAVVLALKDFGYQSIGVRIDSGDLAYLSKELRKMFTKLSESLNIDWIANLSITASNDINEETLYSLEQQGHSINAFGIGTHLVTCQKQPALGCVFKLVELNGDPRMKLSQDIAKVTIPGKKNIYRLYGHDGLALLDLLTKADEKAP--GIEERVLCQHPIQGAKRAYVKPKVIESLLKVYWKNGKIETPLDDLEGCRQVVKKSLATIRQDHKRALNPTPYKVSVTTELFQFMHNLWMDCAP 1619
+PLLTD YQ +MA YW + D A F+LFFR+ PF G F + AGL +C+ +++ F+ + D+++L V+P TDP FF L+ L +EVT+ A+PEG++ F VPL++V GPL VVQLLET LL LV++ASLVATNAAR R +G +K LLE GLRRAQGPDGGL+AS Y YLGGFD +S+VLA + +PV GT AH+FV+SF ++ L + L++V + + + GE AF AYA +FP F L+DTY +SG NFLAV LAL + GY+++GVR+DSGDL ++E+RK+F + + W+ ++ I SN+I+EE L L Q+G +N GIGT +VTC +QP+LG V+KLV + G PRMKL++D K T+PG K +RL G DG L+D+L A+E P G E RV P + V+P +E LL++ + G++ PL L R + + SL+ + +H+R +P Y+V ++ L +++L +P
Sbjct: 14 RPLLTDLYQATMALGYWRAGRARDAAEFELFFRRCPFGGAFALAAGLRDCVRFLRAFRLRDADVQFLASVLPPDTDPAFFEHLRALDCSEVTVRALPEGSLAFPGVPLLQVSGPLLVVQLLETPLLCLVSYASLVATNAARLRLIAGPEKRLLEMGLRRAQGPDGGLTASTYSYLGGFDSSSNVLAGQLRGVPVAGTLAHSFVTSFSGSEVPPDPMLAPAAGEGPGVDLAAKAQVWLEQVCAHLGLGVQEPHPGERAAFVAYALAFPRAFQGLLDTYSVWRSGLPNFLAVALALGELGYRAVGVRLDSGDLLQQAQEIRKVFRAAAAQFQVPWLESVLIVVSNNIDEEALARLAQEGSEVNVIGIGTSVVTCPQQPSLGGVYKLVAVGGQPRMKLTEDPEKQTLPGSKAAFRLLGSDGSPLMDMLQLAEEPVPQAGQELRV---WPPGAQEPCTVRPAQVEPLLRLCLQQGQLCEPLPSLAESRALAQLSLSRLSPEHRRLRSPAQYQVVLSERLQALVNSLCAGQSP 538 The following BLAST results are available for this feature:
BLAST of TCONS_00000008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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