|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000107 ID=TCONS_00000107|Name=TCONS_00000107|organism=Clytia hemisphaerica|type=transcript|length=681bp
CAGAACGATTTGAAGCGTGAAAAGAAGAGGATCGAATCTTTGATCCGTGA
ACGCAATGCTTACAGAGAAGAGGCTCACGCGAATAGTATGAAGAAGATTG
AAACCAACAAAAAGCTTGAGGCCACCAAAGAACACTTGCAAACAATCAAG
CAAGAATATGAACATAAAATTGCTCAAATGCAAACCATCCAAGAAGCAGA
GGCAGCGGGTAAGCAAAAGCAAAGAAAACGCAAGAGAAAATCTAAACAAG
TTACCTCCAACGATATCGAAGCAAATACCCTGATCGTTGCTACACAATGT
AAGAAAGACCTTCCAAAGCCACAAGAAGCAAAGAGTAACAATCCAAACAA
AGATCGACCAAAAAAATCAGATCTTGACAATGGAAAGATAGAAAAAGTCA
CTAAAGTACAAAAAAGTACGGCTCAACGAAGAAGTCAGTCAAAAGCATCT
AAGAACATTGTTTGTACGACGCCAGATGCTATTTTCGACCAACATGATAA
CGAAAGGCCGTGGAGCGTATATGACACTTCACTTATCACCTTTTGTATCG
GAATATGGTTTCTTCTCATCAAGATCTGCAGCATTGTCACCAACGATGAC
TCACTCTGGTAGTAACGTCATCTCCAAATCATATGTATACATTTGTAAAT
AACTTCTCACACTggatattttatattattt Run BLAST on NCBI protein sequence of TCONS_00000107-protein >TCONS_00000107-protein ID=TCONS_00000107-protein|Name=TCONS_00000107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
QNDLKREKKRIESLIRERNAYREEAHANSMKKIETNKKLEATKEHLQTIK
QEYEHKIAQMQTIQEAEAAGKQKQRKRKRKSKQVTSNDIEANTLIVATQC
KKDLPKPQEAKSNNPNKDRPKKSDLDNGKIEKVTKVQKSTAQRRSQSKAS
KNIVCTTPDAIFDQHDNERPWSVYDTSLITFCIGIWFLLIKICSIVTNDD
SLW Run BLAST on NCBI transcript from alignment at sc0000001:1955818..1957888+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000107 ID=TCONS_00000107|Name=TCONS_00000107|organism=Clytia hemisphaerica|type=transcript|length=2071bp|location=Sequence derived from alignment at sc0000001:1955818..1957888+ (Clytia hemisphaerica)
CAGAACGATTTGAAGCGTGAAAAGAAGAGGATCGAATCTTTGATCCGTGA
ACGCAATGCTTACAGAGAAGAGGTAAGATTAGCTTTTTATTCCAATAAAT
TACCATCGATCAGCATCGATAAAGAATTTTTAGGAACTGAATAGCTAGAT
AGCTAGGTTGTGTGAGTCCCTAAGACAATGTTTGAATGATTGTTTGATAA
TCAAACACTTCCCCCTGTGCTTCTGCAATTTTTTTCCGTCAGCGAACGCA
GACCTgatttaacggccgaagacctgaattaacggccgaagacctgaatt
aacggtCAAAGACCTGAATTTCGAGCCGAAGACCTGATTCAACGGTCGAG
GACCTGATTTAACAAGTCACCGGCCGAATACCTGATAAATAAGTTAGAGT
TCCCTTGCATTCAAATAAACACAATAGTACGAGAAAAATGAATAGTAAGA
ATGGTAGATCGACAGGACAGTGATAGTGGGTATTAGAAATGTTTACCCTC
TAATGAAATAAAGGCTATTCTTTTGGCTACGATtaatattttttgaacat
ttagCGAGGAAAAGCCGTAAAGGTTTTCAAAAAGAGCTCTAAAGGTCTCG
ATTATGCCAGTGTTATTGAAATTCTATTTCAGGCTCACGCGAATAGTATG
AAGAAGATTGAAACCAACAAAAAGCTTGAGGCCACCAAAGAACACTTGCA
AACAATCAAGCAAGAATATGAACATAAAATTGCTCAAATGCAAACCATCC
AAGAAGCAGAGGCAGCGGGTAAGCAAAAGCAAAGAAAACGCAAGAGAAAA
TCTAAACAAGTTACCTCCAACGATATCGAAGCAAATACCCTGATCGTTGC
TACACAATGTAAGAAAGACCTTCCAAAGCCACAAGAAGCAAAGAGTAACA
ATCCAAACAAAGATCGACCAAAAAAATCAGATCTTGACAATGGAAAGATA
GAAAAAGTCACTAAAGTACAAAAAAGGTATCTATGCTCTATTCTTCTACA
ATCAGTGTCATAACATTggcaattttggcaattttggcaattttaccatt
tttcgaaaattgaagttcgtNGTGTCATAACATTggcaattttggcaatt
ttggctattttaccatttttcgaaaattgaagttcgagcgagaaagtcaa
tttcgggccttcaacttgatctCATGgaatatttcgatctgggagggatt
tattggtttctaggctatatttcaagccctatcGGACCatctttgaactt
ttggatcctcacgTCCTAgggtcttaagtctagcgttaaaactcagagtN
CATGgaatatttcgatctgggagggatttattggtttctaggctatattt
caagccctatcGGACCatctttgaacttttggatcctcacatcctagggt
cttaagtctagcgttaaaaagatagagttaaaactctacctttgCAACCT
AATTtggagcacttccaaatcgtttgtggttataagatttcgtggggaat
ttcccttttgtgccaagtattttggaacTGATTGTAGACATTTTCAATGA
TTGCCAATTCACCCTTTCGACCGTATCCGCCAACTGCCGCGCGGGCTCTT
TTTTGTCTGTTTATTACCCTAAACTCGCATAGTCTTTTTTTCCCCacata
aatacaaaagaaaaacgtATCAAAAAAGAATGGATCTAGTTTAGGGGGAG
AATTAAGTAATCGGTCGAAAAAGGCGTACTTTAACTTCTTTTTACAATGG
TAAAAGATTGGTAAAGCTTTCTTTTCATTAAACATTATCTTCCACTGATT
TTATAGTACGGCTCAACGAAGAAGTCAGTCAAAAGCATCTAAGAACATTG
TTTGTACGACGCCAGATGCTATTTTCGACCAACATGATAACGAAAGGCCG
TGGAGCGTATATGACACTTCACTTATCACCTTTTGTATCGGAATATGGTT
TCTTCTCATCAAGATCTGCAGCATTGTCACCAACGATGACTCACTCTGGT
AGTAACGTCATCTCCAAATCATATGTATACATTTGTAAATAACTTCTCAC
ACTggatattttatattattt Coding sequence (CDS) from alignment at sc0000001:1955818..1957888+ >TCONS_00000107 ID=TCONS_00000107|Name=TCONS_00000107|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000001:1955818..1957888+ (Clytia hemisphaerica)
CAGAACGATTTGAAGCGTGAAAAGAAGAGGATCGAATCTTTGATCCGTGA
ACGCAATGCTTACAGAGAAGAGGCTCACGCGAATAGTATGAAGAAGATTG
AAACCAACAAAAAGCTTGAGGCCACCAAAGAACACTTGCAAACAATCAAG
CAAGAATATGAACATAAAATTGCTCAAATGCAAACCATCCAAGAAGCAGA
GGCAGCGGGTAAGCAAAAGCAAAGAAAACGCAAGAGAAAATCTAAACAAG
TTACCTCCAACGATATCGAAGCAAATACCCTGATCGTTGCTACACAATGT
AAGAAAGACCTTCCAAAGCCACAAGAAGCAAAGAGTAACAATCCAAACAA
AGATCGACCAAAAAAATCAGATCTTGACAATGGAAAGATAGAAAAAGTCA
CTAAAGTACAAAAAAGTACGGCTCAACGAAGAAGTCAGTCAAAAGCATCT
AAGAACATTGTTTGTACGACGCCAGATGCTATTTTCGACCAACATGATAA
CGAAAGGCCGTGGAGCGTATATGACACTTCACTTATCACCTTTTGTATCG
GAATATGGTTTCTTCTCATCAAGATCTGCAGCATTGTCACCAACGATGAC
TCACTCTGGTAGCAGAACGATTTGAAGCGTGAAAAGAAGAGGATCGAATC
TTTGATCCGTGAACGCAATGCTTACAGAGAAGAGGCTCACGCGAATAGTA
TGAAGAAGATTGAAACCAACAAAAAGCTTGAGGCCACCAAAGAACACTTG
CAAACAATCAAGCAAGAATATGAACATAAAATTGCTCAAATGCAAACCAT
CCAAGAAGCAGAGGCAGCGGGTAAGCAAAAGCAAAGAAAACGCAAGAGAA
AATCTAAACAAGTTACCTCCAACGATATCGAAGCAAATACCCTGATCGTT
GCTACACAATGTAAGAAAGACCTTCCAAAGCCACAAGAAGCAAAGAGTAA
CAATCCAAACAAAGATCGACCAAAAAAATCAGATCTTGACAATGGAAAGA
TAGAAAAAGTCACTAAAGTACAAAAAAGTACGGCTCAACGAAGAAGTCAG
TCAAAAGCATCTAAGAACATTGTTTGTACGACGCCAGATGCTATTTTCGA
CCAACATGATAACGAAAGGCCGTGGAGCGTATATGACACTTCACTTATCA
CCTTTTGTATCGGAATATGGTTTCTTCTCATCAAGATCTGCAGCATTGTC
ACCAACGATGACTCACTCTGGTAGCAGAACGATTTGAAGCGTGAAAAGAA
GAGGATCGAATCTTTGATCCGTGAACGCAATGCTTACAGAGAAGAGGCTC
ACGCGAATAGTATGAAGAAGATTGAAACCAACAAAAAGCTTGAGGCCACC
AAAGAACACTTGCAAACAATCAAGCAAGAATATGAACATAAAATTGCTCA
AATGCAAACCATCCAAGAAGCAGAGGCAGCGGGTAAGCAAAAGCAAAGAA
AACGCAAGAGAAAATCTAAACAAGTTACCTCCAACGATATCGAAGCAAAT
ACCCTGATCGTTGCTACACAATGTAAGAAAGACCTTCCAAAGCCACAAGA
AGCAAAGAGTAACAATCCAAACAAAGATCGACCAAAAAAATCAGATCTTG
ACAATGGAAAGATAGAAAAAGTCACTAAAGTACAAAAAAGTACGGCTCAA
CGAAGAAGTCAGTCAAAAGCATCTAAGAACATTGTTTGTACGACGCCAGA
TGCTATTTTCGACCAACATGATAACGAAAGGCCGTGGAGCGTATATGACA
CTTCACTTATCACCTTTTGTATCGGAATATGGTTTCTTCTCATCAAGATC
TGCAGCATTGTCACCAACGATGACTCACTCTGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000107-exon-sc0000001-1491911889:1955818..1955889 | TCONS_00000107-exon-sc0000001-1491911889:1955818..1955889 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1510915933:1955818..1955889 | TCONS_00000107-exon-sc0000001-1510915933:1955818..1955889 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1575043694:1955818..1955889 | TCONS_00000107-exon-sc0000001-1575043694:1955818..1955889 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1491911889:1956450..1956793 | TCONS_00000107-exon-sc0000001-1491911889:1956450..1956793 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1510915933:1956450..1956793 | TCONS_00000107-exon-sc0000001-1510915933:1956450..1956793 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1575043694:1956450..1956793 | TCONS_00000107-exon-sc0000001-1575043694:1956450..1956793 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1491911889:1957624..1957888 | TCONS_00000107-exon-sc0000001-1491911889:1957624..1957888 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1510915933:1957624..1957888 | TCONS_00000107-exon-sc0000001-1510915933:1957624..1957888 | Clytia hemisphaerica | exon |
| TCONS_00000107-exon-sc0000001-1575043694:1957624..1957888 | TCONS_00000107-exon-sc0000001-1575043694:1957624..1957888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1955818..1957888 + |
Blast
The following BLAST results are available for this feature:
|
