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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000111 ID=TCONS_00000111|Name=TCONS_00000111|organism=Clytia hemisphaerica|type=transcript|length=1829bp
CTTACCTCTTCATCTGAAGACTCCTTCCCATTCTCCTCAAGTGCGTCACC
TTCGCTCATCGCTTCTCGCATTTCATCCTCATCAATGTTATCTTTATTGT
TATCGAACACAGTCTTCCAAATTTTGACCTCGTGTTTTAATCGTTCACTC
TCTCGATACAATTCCTCGTAAATTTGTATAATCTCATCTCGCTCTTTGAT
CAAATCCTCGTTATCCACAGCTAAATCTTCGTTTTCTTCCACTATTTTTT
CGTTCTCCAGTTGCGAGTTGATAAGTTCCTGTCTTAATCTCCCGATCTCG
TAATTTGCGTCCTCAAGTTTAATTCCTAGCCTGCGTGTCTGATTTTTCTC
TTCCTCCAGGctattattgattttctttagcTCTCGTTCGAGTTTCTTAA
TCTCTTTCATAAAACCATCGCGCTCATCTAAACTATCTTGTAATTGAGCC
TCCAGTTCGTGTATATCTTCACCAGATCGAGGTTGTTGTTCCATTTGTTT
GATACCGTTCATAAGAGCAACACTTGCGTTctcaaaatctttttccaatT
CCAATATCTTCTCCTCTTTCATTTCCAAAGTTTCCTTAAGCTCTTCGAGT
TGAATCGTTAATTCTTCGATTAAATCTTCTTTCGATTTTATCGTGTCTCT
TTCGACTTGAATTTCATGTTCTAACTGTTCTATTCGTTCCTCACGATCAT
TTAAATCTTTTTCCATTCGGATTTGAATTTCTTCCTGTTCGACAAACTCG
CTTTCCAAACTTTGTAAATCGTTTAATTTCTGATCGTAATTGGTACGTTG
CGTTTTTAACTCGCTTTCGAGGTCTTTAACCAGTTCTTGTTTCGATTTAA
CGTCTTCGGAAAGattttttaattctttaattaAATCTCGAATTCGTTCA
TCCTTTTCCTTCCGTTTTTCAGAGTCCCTAGAGCATTGTTTTTCTAGTTC
CTCAATTCTTAAATCcttttctttacatttttcaaactctttatttttat
cattttctaaTTGGATTattctttcttgtttttctttacaCTTATTACAG
TCTCCATCTACCGTGGCTGTAACAGATGTCGTCGTTATCGCTGTGTCAAT
ACCGTTCACTTTTGATCGTCGAGAACGTCTCGGTGATTCTATAACCGGAT
CATCAAGTGTACGGCGAGACGTTGTCCGATAAGAGCGAGTTTCGTCTGCA
GACGTGGTACTACGGTATGGACGGTCGTATCTGGAAGATGACGTCGTTGA
ATAATCAGTCGTTGGTGTATAATCATCTAAGCGTCTCGAGCTACGGCTAC
TTCTGTACGTATCGAGCGGGTCGTCTAGTACGCTTCTACGGTATCGGCTA
CTGCCTGCGCTAGTACCACGTGTTAATCCACCAATGTCATCTGAGTAAGA
AGTTCGGGTTGAACGGTAAGAAGAACGGCCGAGTAAATCATCCGAGTTTC
TACTACTCGAATACCGAGTTGATCGTAAACGTTCGGTCATATTCTCGTCT
TCCGAGTCGCTTTTACCGTCGGCTTTTTCGTTTTCTCGTTGCTCGGTAAT
CGGGACCGATGGATTTTTCGTATTCTTAGATAAAAATTGTTCAGGACCTT
CAATTTGTTTTAAATTGGTTAAATGCCTGATTTCGTATTTTAATAAAGAA
GCTTTTGGAAATCCAGAAGATTGGGTACCGTCACCATTTTCTGTTGGACT
TAAAACCAAGTTGTTATTTGCACTAAAATCACTTTTCCACTCTTTATCAT
CTGCAGTGTGAATGGCCCACTTGGGTTGTGTCGTATTTGTGGTGATATCA
CGGACTTTGTTTGAACCGTCTTTTTCTAT Run BLAST on NCBI transcript from alignment at sc0000001:2089782..2091678+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000111 ID=TCONS_00000111|Name=TCONS_00000111|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at sc0000001:2089782..2091678+ (Clytia hemisphaerica)
CTTACCTCTTCATCTGAAGACTCCTTCCCATTCTCCTCAAGTGCGTCACC
TTCGCTCATCGCTTCTCGCATTTCATCCTCATCAATGTTATCTTTATTGT
TATCGAACACAGTCTTCCAAATTTTGACCTCGTGTTTTAATCGTTCACTC
TCTCGATACAATTCCTCGTAAATTTGTATAATCTCATCTCGCTCTTTGAT
CAAATCCTCGTTATCCACAGCTAAATCTTCGTTTTCTTCCACTATTTTTT
CGTTCTCCAGTTGCGAGTTGATAAGTTCCTGTCTTAATCTCCCGATCTCG
TAATTTGCGTCCTCAAGTTTAATTCCTAGCCTGCGTGTCTGATTTTTCTC
TTCCTCCAGGctattattgattttctttagcTCTCGTTCGAGTTTCTTAA
TCTCTTTCATAAAACCATCGCGCTCATCTAAACTATCTTGTAATTGAGCC
TCCAGTTCGTGTATATCTTCACCAGATCGAGGTTGTTGTTCCATTTGTTT
GATACCGTTCATAAGAGCAACACTTGCGTTctcaaaatctttttccaatT
CCAATATCTTCTCCTCTTTCATTTCCAAAGTTTCCTTAAGCTCTTCGAGT
TGAATCGTTAATTCTTCGATTAAATCTTCTTTCGATTTTATCGTGTCTCT
TTCGACTTGAATTTCATGTTCTAACTGTTCTATTCGTTCCTCACGATCAT
TTAAATCTTTTTCCATTCGGATTTGAATTTCTTCCTGTTCGACAAACTCG
CTTTCCAAACTTTGTAAATCGTTTAATTTCTGATCGTAATTGGTACGTTG
CGTTTTTAACTCGCTTTCGAGGTCTTTAACCAGTTCTTGTTTCGATTTAA
CGTCTTCGGAAAGATTTTTTAACTCTTTAATTAAATCTTNTCTTTAACCA
GTTCTTGTTTCGATTTAACGTCTTcggaaacattttttaattctttaatt
aAATCTCGAATTCGTTCATCCTTTTCCTTCCGTTTTTCAGAGTCCCTAGA
GCATTGTTTTTCTAGTTCCTCAATTCTTAAATCcttttctttacattttt
caaactctttatttttatcattttctaaTTGGATTattctttcttgtttt
tctttacaCTTATTACAGTCTCCATCTACCGTGGCTGTAACAGATGTCGT
CGTTATCGCTGTGTCAATACCGTTCACTTTTGATCGTCGAGAACGTCTCG
GTGATTCTATAACCGGATCATCAAGTGTACGGCGAGACGTTGTCCGATAA
GAGCGAGTTTCGTCTGCAGACGTGGTACTACGGTATGGACGGTCGTATCT
GGAAGATGACGTCGTTGAATAATCAGTCGTTGGTGTATAATCATCTAAGC
GTCTCGAGCTACGGCTACTTCTGTACGTATCGAGCGGGTCGTCTAGTACG
CTTCTACGGTATCGGCTACTGCCTGCGCTAGTACCACGTGTTAATCCACC
AATGTCATCTGAGTAAGAAGTTCGGGTTGAACGGTAAGAAGAACGGCCGA
GTAAATCATCCGAGTTTCTACTACTCGAATACCGAGTTGATCGTAAACGT
TCGGTCATATTCTCGTCTTCCGAGTCGCTTTTACCGTCGGCTTTTTCGTT
TTCTCGTTGCTCGGTAATCGGGACCGATGGATTTTTCGTATTCTTAGATA
AAAATTGTTCAGGACCTTCAATTTGTTTTAAATTGGTTAAATGCCTGATT
TCGTATTTTAATAAAGAAGCTTTTGGAAATCCAGAAGATTGGGTACCGTC
ACCATTTTCTGTTGGACTTAAAACCAAGTTGTTATTTGCACTAAAATCAC
TTTTCCACTCTTTATCATCTGCAGTGTGAATGGCCCACTTGGGTTGTGTC
GTATTTGTGGTGATATCACGGACTTTGTTTGAACCGTCTTTTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000111-exon-sc0000001-1491911889:2089782..2090644 | TCONS_00000111-exon-sc0000001-1491911889:2089782..2090644 | Clytia hemisphaerica | exon |
| TCONS_00000111-exon-sc0000001-1510915933:2089782..2090644 | TCONS_00000111-exon-sc0000001-1510915933:2089782..2090644 | Clytia hemisphaerica | exon |
| TCONS_00000111-exon-sc0000001-1575043694:2089782..2090644 | TCONS_00000111-exon-sc0000001-1575043694:2089782..2090644 | Clytia hemisphaerica | exon |
| TCONS_00000111-exon-sc0000001-1491911889:2090713..2091678 | TCONS_00000111-exon-sc0000001-1491911889:2090713..2091678 | Clytia hemisphaerica | exon |
| TCONS_00000111-exon-sc0000001-1510915933:2090713..2091678 | TCONS_00000111-exon-sc0000001-1510915933:2090713..2091678 | Clytia hemisphaerica | exon |
| TCONS_00000111-exon-sc0000001-1575043694:2090713..2091678 | TCONS_00000111-exon-sc0000001-1575043694:2090713..2091678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2089782..2091678 + |
Blast
The following BLAST results are available for this feature:
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