TCONS_00000116 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000116
Unique Name	TCONS_00000116
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	854

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000001:2202192..2206120+
coding sequence from alignment at sc0000001:2202192..2206120+

transcript sequence

>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=transcript|length=854bp
GGCATTTTGTAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTG
TACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCA
CCAGGTGCAGATGATAATGACCATGACAAATTCAACGAAAAACACAACTC
TGTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAA
CAGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGA
TTCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCA
TATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTG
AAGTGACATTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATAC
CAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGAC
CATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGA
GCAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTT
GGATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGG
GAATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAATTCATC
ATTAGAATCTTCTCATGTTCTGTATTGATTTATTTACATACATTATAAAT
TTCaagcaagaaaatttttgaaaatttctttaaatgtCTTTTTGTTTTAA
TATACCACACTttgtgaaattttatttttacgaTATTGTTGAAAATACAA
CCAAAATAtcgacaaaaaatatttttcattaaatatcTGCATCAAATAAG
ATTG

Run BLAST on NCBI

protein sequence of TCONS_00000116-protein

>TCONS_00000116-protein ID=TCONS_00000116-protein|Name=TCONS_00000116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
AFCSSLKSLTMKTLTVVLLLGIVAAIQCHAVSSPGADDNDHDKFNEKHNS
VDHHQHIIEEVHTERGTAGATSEYSATYMAEKGFQKNYAYGWKTKNNYGH
MPEMIWYKFREPFVPAEVTFRSNGNVNEMPTKYQFVGSNDHHCNEYSPWT
ILCEDLSGDVVKYRYESKRCAVSHYHQATYFCFGLRVLNTKGNTAYAGVG
NVRFFKRYDSAHM

Run BLAST on NCBI

transcript from alignment at sc0000001:2202192..2206120+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=transcript|length=3929bp|location=Sequence derived from alignment at sc0000001:2202192..2206120+ (Clytia hemisphaerica)
GGCATTTTGTAGTTcattgaaaaggtaaaatattttGTCCTAATATTCCt
tatcaattttgaaaattgaaactttccaGGTGAAGATGTGGGATGCATTC
TTTGCCCATAGTATAGACAAAGCGGTGACAAAATACCGGAAAGCGGTGAA
TACTTCATGAAATACCGGCGTACTGGACAGAAAATTCTCAGATTCTGTTC
AAAAGTCTTTTTAACAAGTTCTGGAATACCATTTTCCCGTCAAATACCGA
AATGAGGATTATACCGAAATCTTGGAAGTCCCCCTGTGTAGATCAAAGAT
AAAAAGGGATATTATCTTCGTATGTATTTCATTTGCAGTTTAACAATGAA
GACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTC
ACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATGACAAATTCAAC
GAAAAACACAACTGTAAGATTTGCGTTATTGGACTTTTCCTAATTTCCTA
CCCATTCATTCTTTTGGTCGGTTGAATGACCGAGAGGTGTCATTTGGGCT
CAGTACAAAATTGTAGTTATATCCCTTGACTGCTAAAAATACCTTTACAA
AGGCCTACGGGGTATCCAAAAACTACTTTTCGGGGTAACCATTGAAGCCC
GGGGTACTCTAGGTGATGCGAGGCCCTCTAGGGTATGTTTTTCAGCCTTC
TCAAAGTGAAATCTAAAGGGccaaaagtacccaaaaagcgCAATGTTAGG
GTGTAAAGTGAGATAAACGATGTTTTTTGGGTTAACTTTAATCAATCAAA
CGAGGTGAATAATATAATAGAGGGATCCAATTTTGAGACCCTAATTCTGT
CCGTTCAGATCGAATGCCCTTGGGAATAAATAGCTCTTGTATAAGAATAA
GAATGAAGACATTGAATGAAGTGAATACAATCGGgctcatgttgtcttct
gaccagccaccagaaccgttggaaaaccaacggatccggcgaaactcgaa
ctcacaaccatgctATTCGCAGACATTTGCTCTATCATTGAGCTACGGAT
CCCATATACCAATATATCAACATTCTTATCTTTTTAATCAGCTGTTGATC
ATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGT
GCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAA
GAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAG
AAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACA
TTCAGATCCAACGGTAAGCTTTTTTTTCAACCTCGTTTATAAGCGCTAAA
ATANTCATTTGTTCCAGCTGAAGTGACCTTCAGATCCAACGGTGAGcttt
ttacaataaaatttgCCTTTATTGTATTCATATAACAAACAGTCTAGGAA
ACATAAAAACCCATCCACAATAAAttataaaaacgaaagtggtctcttct
accaTGAAAAATTCTAGAATGTGTAAGAACGAAGCTATAGCTATAGCAGC
TATAGCCTAAAACTGAGTTTGTTTTCATCTTCAGAGATAAGTGCTCAATG
TTCTTATCTAAGACACAAAGTCTTATTATGATAAGACTTATATGATAAGG
GGTGGACACTCAAGGTGAAAGGCCTACCGTACGTGCAACCCTTAAGGATC
CTCTTTCTAAGCTTTCTAAAGCGAACTGTAAGGGTCAAAATGAGCAAAGC
TGCgaaaaagtgcactctaagggtgtaaaatttggaaaatgtgACATGTC
ATACTTTGCCTTAAAATGCTCAAAATTTTTAGAGAAATTGAATcaataag
ggtcgattttttgtTCAAGTTTACTCAAATATTACTACAATGAAGTGAAT
AGagtcgctctcatgttgtcttctgaccagccaccagaacgcgttggaaa
accaacggatccggcgaaactcaaactcacaaccatgccattcgcgggTA
TTTGCTCTACCATTAAGCTAcggtaataataataatacaatATTCATGAT
CAAATTTtactaaattttctctgcactgtaagggtttaaTTTCAAAGGCA
TAACTTTAGGCCATACAATCAGTCGTTTTTAAATAGAGTGATAGACTACC
AAAGTCTTTTCTATCACTTTTTAAGGAAATGTCAACGAGATGCCGACCAA
ATACCAATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCAT
GGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGGTAC
GAGCAATATAATATGATAACAAAAGGCTAAAAGTGATTTTCAGTCTTTCC
AAGGCAGGAGAAAGTGAATTTGTTCATTATTCTATATATTTAATTTAATA
TGATCTCAAAGGGCTAAAAGTGattctttaatttttccaagGCAGAAGAA
AgtgaatttcttcattttctgaaaagcTTCCCTGCTCCTCTTTTTGGATT
TAAGAATCATTTAACAATAAATTGAGAGTGCAATTAAAAAACCGATAGCA
TTGTTTTAGTGCATTGATGCTTTTCCCATCAGTAAGGGATTCCAAcgcag
ctggcacacaacgttgttttaacgttcaaataacgttatttgaacgttat
gaatgtcacatggacgttgttttgacgttgtgtgccgtctggaAGGGGTC
TGTGATAAGCGAGTGTTAATCATTTCCGGATGTACAATTGTTATACAGTG
AGCTCTTGccaattcgaacttctattatttgaatcattctataattcgaa
ataATTCGTAAATCCGCCATCAAAGGGAAACGTAAAAATGCTTTCTTTAA
TTTGAATCCTTcgttaattcgaacaaattacaCTTCCGGTTCGACTTCTA
ATaaactattattatccatataatatcattaagtaagccattaaagataC
CGGTTACtctttcgaagcgggctacacggctttttgcgcaatgcaattgg
ttcttttcgcatgacgacgagcctacattgtccagagttgcccgtcgtta
ggaaaattcattgtgacgtcactttttcaaaggaaaacgaGCAATGcgtg
acatcatttctctcatttttttcaatattgccctcggtcaacgcaacaac
ctcgcaaactcggtcgttacttgacctcgggcaatatttctcagtacata
GCCCTCataaaccggtcattattgtattattgttaaccggttactttttc
gaagcgggctacacgactttttgtgtaatgcaattggttcttttcgcatg
acgacgggcctacactggccagagttgcccgtcgttaggaaaattcattg
tgacgtcactttttcaaaggaaaataaaCAANTACACTggccagagttgc
ccgtcgttaggaaaattcattgtgacgtcactttttcaaaggaaaatgaa
caatgcgtcctcgcaagctcggtcgttacttgacctcgggcaatatttct
cagtacagccctcataaaccggtcattattgtattagagtTATACTGTAA
TATTATTCACTTTACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTA
CCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAG
GCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATAC
GATTCTGCTCATATGTAAATTCATCATTAGAATCTTCTCATGTTCTGTAT
TGATTTATTTACATACATTATAAATTTCaagcaagaaaatttttgaaaat
ttctttaaatgtCTTTTTGTTTTAATATACCACACTttgtgaaattttat
ttttacgaTATTGTTGAAAATACAACCAAAATAtcgacaaaaaatatttt
tcattaaatatcTGCATCAAATAAGATTG

Coding sequence (CDS) from alignment at sc0000001:2202192..2206120+

>TCONS_00000116 ID=TCONS_00000116|Name=TCONS_00000116|organism=Clytia hemisphaerica|type=CDS|length=3210bp|location=Sequence derived from alignment at sc0000001:2202192..2206120+ (Clytia hemisphaerica)
GCATTTTGTAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTGT
ACTCCTTTTGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCAC
CAGGTGCAGATGATAATGACCATGACAAATTCAACGAAAAACACAACTCT
GTTGATCATCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAAC
AGCAGGTGCGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGAT
TCCAAAAGAACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCAT
ATGCCAGAAATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGA
AGTGACATTCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATACC
AATTCGTTGGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGACC
ATCTTGTGCGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGAG
CAAAAGATGTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTTG
GATTGAGAGTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGG
AATGTCAGATTCTTTAAAAGATACGATTCTGCTCATATGTAAGCATTTTG
TAGTTcattgaaaagTTTAACAATGAAGACATTGACTGTTGTACTCCTTT
TGGGCATCGTTGCTGCAATTCAATGTCACGCTGTTTCATCACCAGGTGCA
GATGATAATGACCATGACAAATTCAACGAAAAACACAACTCTGTTGATCA
TCACCAACACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGTG
CGACATCAGAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAAG
AACTACGCTTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAGA
AATGATTTGGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACAT
TCAGATCCAACGGAAATGTCAACGAGATGCCGACCAAATACCAATTCGTT
GGTTCCAACGATCACCACTGCAATGAATATTCTCCATGGACCATCTTGTG
CGAAGACTTGTCTGGAGATGTAGTCAAATACAGATACGAGAGCAAAAGAT
GTGCTGTCAGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGA
GTCTTGAACACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAG
ATTCTTTAAAAGATACGATTCTGCTCATATGTAAGCATTTTGTAGTTcat
tgaaaagTTTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATC
GTTGCTGCAATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAA
TGACCATGACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAAC
ACATCATTGAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCA
GAATACTCTGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGC
TTACGGATGGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTT
GGTATAAATTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCC
AACGGAAATGTCAACGAGATGCCGACCAAATACCAATTCGTTGGTTCCAA
CGATCACCACTGCAATGAATATTCTCCATGGACCATCTTGTGCGAAGACT
TGTCTGGAGATGTAGTCAAATACAGATACGAGAGCAAAAGATGTGCTGTC
AGTCATTACCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAA
CACCAAAGGCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTA
AAAGATACGATTCTGCTCATATGTAAGCATTTTGTAGTTcattgaaaagT
TTAACAATGAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGC
AATTCAATGTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATG
ACAAATTCAACGAAAAACACAACTCTGTTGATCATCACCAACACATCATT
GAAGAAGTACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTC
TGCTACTTACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGAT
GGAAAACAAAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAA
TTCCGTGAACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGAAA
TGTCAACGAGATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACC
ACTGCAATGAATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGA
GATGTAGTCAAATACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTA
CCACCAGGCTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAG
GCAACACTGCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATAC
GATTCTGCTCATATGTAAGCATTTTGTAGTTcattgaaaagTTTAACAAT
GAAGACATTGACTGTTGTACTCCTTTTGGGCATCGTTGCTGCAATTCAAT
GTCACGCTGTTTCATCACCAGGTGCAGATGATAATGACCATGACAAATTC
AACGAAAAACACAACTCTGTTGATCATCACCAACACATCATTGAAGAAGT
ACACACAGAACGTGGAACAGCAGGTGCGACATCAGAATACTCTGCTACTT
ACATGGCTGAAAAAGGATTCCAAAAGAACTACGCTTACGGATGGAAAACA
AAGAACAATTATGGTCATATGCCAGAAATGATTTGGTATAAATTCCGTGA
ACCATTTGTTCCAGCTGAAGTGACATTCAGATCCAACGGAAATGTCAACG
AGATGCCGACCAAATACCAATTCGTTGGTTCCAACGATCACCACTGCAAT
GAATATTCTCCATGGACCATCTTGTGCGAAGACTTGTCTGGAGATGTAGT
CAAATACAGATACGAGAGCAAAAGATGTGCTGTCAGTCATTACCACCAGG
CTACATACTTCTGTTTTGGATTGAGAGTCTTGAACACCAAAGGCAACACT
GCTTATGCTGGTGTCGGGAATGTCAGATTCTTTAAAAGATACGATTCTGC
TCATATGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000063	XLOC_000063	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000116-protein	TCONS_00000116-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000001	supercontig	sc0000001:2202192..2206120 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68587	2.19126	2.42887	2.4372	0	0.175845	0	0.198612	0	0.114826	0.278633	0.109898	459.701	383.162	0.366043	0.196883	9.6753	7.54857	1269.95	1416.28	142.358	139.652	12.7369	22.0328	48.3075	45.6432	0.0754217	0.0804921	0.305252	0.186602

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008979	Galactose-bd-like

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000116 vs. Swiss-Prot (Human)

BLAST of TCONS_00000116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000116 (transcript) - C. hemisphaerica