TCONS_00000336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000336
Unique NameTCONS_00000336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000336 ID=TCONS_00000336|Name=TCONS_00000336|organism=Clytia hemisphaerica|type=transcript|length=459bp
AAACCTGCTTTTCTACCCCTTCCCTCTAAGTGATCTTAAGATAACACATA
ACCATAATTACTCCCGTACCCTTCCTCCgtgaatatttgaaaaatctaaT
CTTTGTGCGTAGATGTATATAcggcaaaaaaatttgaaagcttCATCAAA
TACAATATCTTTCCAATCTTTCAGCCTTCTAGGACataaagttttcaaaa
gggAATATAGTATCAGAGATATGTTTTggaagaaatgaaaatacaaatgG
AAACTTAAGTAGCTTAGAAGAATAAGTGAACTTTAGACTTAAAAACTTGT
AAGCTGTGGATTAGCtttaaataatgaaaatgaaaaaaacggaAACTTTA
gttatcaaaattcaattttttgatggagAAGTAAAATATCTCATTCAACC
CAAACTGCGAACATCTGCGTGATCTTTCTTCTTCAGGAAGAAACCTGCTT
TTCTACCCC
Run BLAST on NCBI

transcript from alignment at sc0000001:1386763..1387221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000336 ID=TCONS_00000336|Name=TCONS_00000336|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0000001:1386763..1387221 (Clytia hemisphaerica)
GGGGTAGAAAAGCAGGTTTCTTCCTGAAGAAGAAAGATCACGCAGATGTT
CGCAGTTTGGGTTGAATGAGATATTTTACTTctccatcaaaaaattgaat
tttgataacTAAAGTTtccgtttttttcattttcattatttaaaGCTAAT
CCACAGCTTACAAGTTTTTAAGTCTAAAGTTCACTTATTCTTCTAAGCTA
CTTAAGTTTCcatttgtattttcatttcttccAAAACATATCTCTGATAC
TATATTcccttttgaaaactttatGTCCTAGAAGGCTGAAAGATTGGAAA
GATATTGTATTTGATGaagctttcaaatttttttgccgTATATACATCTA
CGCACAAAGAttagatttttcaaatattcacGGAGGAAGGGTACGGGAGT
AATTATGGTTATGTGTTATCTTAAGATCACTTAGAGGGAAGGGGTAGAAA
AGCAGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000210XLOC_000210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000336-exon-sc0000001-1491911889:1386763..1387221TCONS_00000336-exon-sc0000001-1491911889:1386763..1387221Clytia hemisphaericaexon
TCONS_00000336-exon-sc0000001-1510915933:1386763..1387221TCONS_00000336-exon-sc0000001-1510915933:1386763..1387221Clytia hemisphaericaexon
TCONS_00000336-exon-sc0000001-1575043694:1386763..1387221TCONS_00000336-exon-sc0000001-1575043694:1386763..1387221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:1386763..1387221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.191375	0.151227	0.364898	0	0.239171	0.148126	0	0.0945119	0.0943805	0.0980151	0	0	0	0	0	0	0	0	0	0	0.761818	0.543923	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top