TCONS_00000368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000368
Unique NameTCONS_00000368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000368 ID=TCONS_00000368|Name=TCONS_00000368|organism=Clytia hemisphaerica|type=transcript|length=551bp
TAAATCTATCTTCATGATGATGCCAACAACATCTAAACTTGAAAGCGGTA
TCGGCCACGAATCACCGACCCCATCGACTTCAAAGAGCCATAGACATACT
TGGGGATGGCGTTTATACTATTTGTTTTGGATAATAGTGATTGTTatagt
tttgatttgttttattgttGGGGTGGCTTATTTATCGATTTATTATATCG
ATGGGCGTAAGAAAACTCCAGAAAGTTCAGGAGGGCATGTGATGGAGAGA
CAAAGCGTTCCACAGAGCCAAGGTGGTAACTAATACCCTAAGGAAATCTG
CTCAATTTTAACTATGTGTTGCCATTAATAAAATCGTTAATGTATTTGGT
TTACGCTGGTGAAATGCTGAAGTGGAAAGTTTTGTCTTGTGGCTTTGGGC
CAAaactctaagggtcggttttcggaggtctcgtccgcacataccccgtC
TTCTATACTTTTTATACTCATAAATAGATTGCAATAGGATTGTATATAAT
GTATCTAGCTCTTTATTATTATTGTGTCTTTCAAATTTAATTAGATATGG
G
Run BLAST on NCBI

transcript from alignment at sc0000001:2144110..2144660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000368 ID=TCONS_00000368|Name=TCONS_00000368|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0000001:2144110..2144660 (Clytia hemisphaerica)
CCCATATCTAATTAAATTTGAAAGACACAATAATAATAAAGAGCTAGATA
CATTATATACAATCCTATTGCAATCTATTTATGAGTATAAAAAGTATAGA
AGacggggtatgtgcggacgagacctccgaaaaccgacccttagagttTT
GGCCCAAAGCCACAAGACAAAACTTTCCACTTCAGCATTTCACCAGCGTA
AACCAAATACATTAACGATTTTATTAATGGCAACACATAGTTAAAATTGA
GCAGATTTCCTTAGGGTATTAGTTACCACCTTGGCTCTGTGGAACGCTTT
GTCTCTCCATCACATGCCCTCCTGAACTTTCTGGAGTTTTCTTACGCCCA
TCGATATAATAAATCGATAAATAAGCCACCCCaacaataaaacaaatcaa
aactatAACAATCACTATTATCCAAAACAAATAGTATAAACGCCATCCCC
AAGTATGTCTATGGCTCTTTGAAGTCGATGGGGTCGGTGATTCGTGGCCG
ATACCGCTTTCAAGTTTAGATGTTGTTGGCATCATCATGAAGATAGATTT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000242XLOC_000242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000368-exon-sc0000001-1491911889:2144110..2144660TCONS_00000368-exon-sc0000001-1491911889:2144110..2144660Clytia hemisphaericaexon
TCONS_00000368-exon-sc0000001-1510915933:2144110..2144660TCONS_00000368-exon-sc0000001-1510915933:2144110..2144660Clytia hemisphaericaexon
TCONS_00000368-exon-sc0000001-1575043694:2144110..2144660TCONS_00000368-exon-sc0000001-1575043694:2144110..2144660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2144110..2144660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311208	0.101159	0	0.114912	0	0	0.133369	0	0.0874164	0.108279	0.630591	0.138175	0.275966	0.358242	0.235619	0.189642	0.233623	1.11746	0	0	2.40715	1.32089	0.118942	0	0.334131	0.596407	0	0.151805	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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