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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=transcript|length=801bp
AATATCAGTATGCAACTACAAATCTAGGAGTGAGTCAGATGGTAAATGCA
GgatTCATTCGATTTACTATTCTGGGAAAAACTATTTTGTGGAAAGAAAT
TGTAGAGTGTGAAAATGGCGTCTTTCCAATTAACTTTATCAAGCCTAACT
CTATTATTGGCGCTCATGGTAAAAATGTCACATGAAAGATCATTCACAAA
GCTGGGGATATTCAAGGCGACAGATCAAACTAAGAAAGTATTCATGAATC
TGGATAGAGActtgaataatttaaaaaagctttcaaCCATCTTAAAATTG
AGAAGTTTGAATCGGCTTTCAACAACACAGGAGGAACTTGGCAAGAGGAT
TTCGTTTGAAAAACAAGGTGTTTTTcataaattgatgaaaataaagaaac
tatCGCAAGAGGAGGAGATACAACAACCGAGCCCATCTTCGAGAAAGATA
AATATGGACCCGTCAGAGCAACAAAAGATGGCACTTCAGTCCANCTTcga
gaaagaaaaatatggaCCCGTCAGAGCAACAAAAGATGGCACTTCAGTCC
AATCAAAAAATGTCAGACCCTAACAGAGTTATTGGACATTATTGTTATTA
TACTCAAGTTTATAAATGTCAAAGTATAATGGGCAAGAAATATTGTTGGA
AAGAAAGAGAGCAAATTTGTGGACTGTAAAatctaaatgaaaaagttttt
ctgaaTGAAATACGTGAAGTTATTTTCAAGCTATCTAGACGGATTTTTTT
TAGTCTTTTTATAGTGTTTCTTtatgaaagaaatatttcacAAGATTATG
G Run BLAST on NCBI protein sequence of TCONS_00000421-protein >TCONS_00000421-protein ID=TCONS_00000421-protein|Name=TCONS_00000421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MASFQLTLSSLTLLLALMVKMSHERSFTKLGIFKATDQTKKVFMNLDRDL
NNLKKLSTILKLRSLNRLSTTQEELGKRISFEKQGVFHKLMKIKKLSQEE
EIQQPSPSSRKINMDPSEQQKMALQSXFEKEKYGPVRATKDGTSVQSKNV
RP Run BLAST on NCBI transcript from alignment at sc0000002:233104..234472+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000002:233104..234472+ (Clytia hemisphaerica)
AATATCAGTATGCAACTACAAATCTAGGAGTGAGTCAGATGGTAAATGCA
GGTAGGTAAATCAACGTAGTgtaagcccgaagagctagaatcaaatcttt
aacctttctcaggcaagaaaaagtgaagccttaaaatatgcgccgtattt
ttgacgacgggttgtatctagcgattcctttgtttccgagtgatatcttt
ttcgaaatttaggtgtagattttagtttcaatctgtcatttgtgtaaaaa
ccaggtggACTGCGCTAGGCCGTGCAactttggcttcaaatcctagtaag
gagattcgattctagccatTCGGGTTTATACATCATTGGGTGAATGTCAA
TGTCAAAATAgatctctggcgtccatcagtaacgtaGATAAAGCCTGGTG
CAATAAATATAAGCTTTTGTAAACACATTATTGACATTAGGGTAAAGATT
TTGACACCTTGATCGCGATTTGGTGGTTTTCTACAGAAACTGCCTCATAT
TTTATATAAATATTCTTTGAATACAGAAACTTCTTTGTTGTAGAAAAGAG
GGTATTTCTCGTACAAAAATTAGAGGAAGGTTTTTAAAACGATtcgtgta
atacacttttttattttaggatTCATTCGATTTACTATTCTGGGAAAAAC
TATTTTGTGGAAAGAAATTGTAGAGTGTGAAAATGGCGTCTTTCCAATTA
ACTTTATCAAGCCTAACTCTATTATTGGCGCTCATGGTAAAAATGTCACA
TGAAAGATCATTCACAAAGCTGGGGATATTCAAGGCGACAGATCAAACTA
AGAAAGTATTCATGAATCTGGATAGAGActtgaataatttaaaaaagctt
tcaaCCATCTTAAAATTGAGAAGTTTGAATCGGCTTTCAACAACACAGGA
GGAACTTGGCAAGAGGATTTCGTTTGAAAAACAAGGTGTTTTTcataaat
tgatgaaaataaagaaactatCGCAAGAGGAGGAGATACAACAACCGAGC
CCATCTTCGAGAAAGATAAATATGGACCCGTCAGAGCAACAAAAGATGGC
ACTTCAGTCCANCTTcgagaaagaaaaatatggaCCCGTCAGAGCAACAA
AAGATGGCACTTCAGTCCAATCAAAAAATGTCAGACCCTAACAGAGTTAT
TGGACATTATTGTTATTATACTCAAGTTTATAAATGTCAAAGTATAATGG
GCAAGAAATATTGTTGGAAAGAAAGAGAGCAAATTTGTGGACTGTAAAat
ctaaatgaaaaagtttttctgaaTGAAATACGTGAAGTTATTTTCAAGCT
ATCTAGACGGATTTTTTTTAGTCTTTTTATAGTGTTTCTTtatgaaagaa
atatttcacAAGATTATGG Coding sequence (CDS) from alignment at sc0000002:233104..234472+ >TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000002:233104..234472+ (Clytia hemisphaerica)
ATGGCGTCTTTCCAATTAACTTTATCAAGCCTAACTCTATTATTGGCGCT
CATGGTAAAAATGTCACATGAAAGATCATTCACAAAGCTGGGGATATTCA
AGGCGACAGATCAAACTAAGAAAGTATTCATGAATCTGGATAGAGActtg
aataatttaaaaaagctttcaaCCATCTTAAAATTGAGAAGTTTGAATCG
GCTTTCAACAACACAGGAGGAACTTGGCAAGAGGATTTCGTTTGAAAAAC
AAGGTGTTTTTcataaattgatgaaaataaagaaactatCGCAAGAGGAG
GAGATACAACAACCGAGCCCATCTTCGAGAAAGATAAATATGGACCCGTC
AGAGCAACAAAAGATGGCACTTCAGTCCANCTTcgagaaagaaaaatatg
gaCCCGTCAGAGCAACAAAAGATGGCACTTCAGTCCAATCAAAAAATGTC
AGACCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000421-exon-sc0000002-1491911889:233104..233154 | TCONS_00000421-exon-sc0000002-1491911889:233104..233154 | Clytia hemisphaerica | exon |
| TCONS_00000421-exon-sc0000002-1510915933:233104..233154 | TCONS_00000421-exon-sc0000002-1510915933:233104..233154 | Clytia hemisphaerica | exon |
| TCONS_00000421-exon-sc0000002-1575043694:233104..233154 | TCONS_00000421-exon-sc0000002-1575043694:233104..233154 | Clytia hemisphaerica | exon |
| TCONS_00000421-exon-sc0000002-1491911889:233723..234472 | TCONS_00000421-exon-sc0000002-1491911889:233723..234472 | Clytia hemisphaerica | exon |
| TCONS_00000421-exon-sc0000002-1510915933:233723..234472 | TCONS_00000421-exon-sc0000002-1510915933:233723..234472 | Clytia hemisphaerica | exon |
| TCONS_00000421-exon-sc0000002-1575043694:233723..234472 | TCONS_00000421-exon-sc0000002-1575043694:233723..234472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:233104..234472 + |
Blast
The following BLAST results are available for this feature:
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