TCONS_00000631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000631
Unique NameTCONS_00000631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000631 ID=TCONS_00000631|Name=TCONS_00000631|organism=Clytia hemisphaerica|type=transcript|length=1629bp
TTTATCTATTGTGTGAGAAATTCAGataattctttaaaaatcttaGAAAA
AGAGGGTTAACCCTATACATCTgtctaaatttcttttctttgtaaacCTG
TATAGGCAATGAGCATAACTATTTAGcatttttgtagatatttttaaaga
atgaAAGTATGATCAAAACACCTTACAAAATGTCAGTCaatggaagttca
aattcagCTTCCGCTCAAAGCTGGGAAGGACTTAGAAAGAAAGCTCGAGT
ATTGGAGAATGAGCTTGAAATGAAACTTGTATCATTCAGCAAGTTGGGCA
TAAATCAACAAAAAGGATATCAGAAGGTTGAAGAGAAAGAAGCCTTACTT
GGATCAAGTTCAGATACAATGTTTGAAACCATGtctttggaaattgaaaa
acttttgagtAACCTCACTGAGGTTAATGACAGTATGTCTGCTTTTCTAT
CTGATATGAGTATTGGGGAAGCTAATTCTGCACAGCTTCACACTATGCAA
AGACATCGTGACATTCTGCAAGATTATTCACATGAGTTCTCAAAAACCAA
AGCTAACATTCAAGCAACCAAGGAAAGAGAAGATCTATTGGGCTCAGTCA
GGAGAGATATTTACGAATATAAAACTGGTGCTAACCGAAGAACAGACtta
tatttgaaagaaaatgaccATCTGAAAAATTCTGACCGAATGGCTGATGA
AATTATTGATATGGCAATGACAACTAAAGAAAATTTGGGATCACAACGAC
GACTTTTCAGCAATATATCTAACAGAGTGGTTAGTTTGACCAATCGATTC
CCAGTAATCAACAGTTTGGTACAAAAAATCAATGTCCGCAAGCGAAGAGA
TACTTTGATTCTTGGTTTTGTTGTTTCGTTGTGTATTATACTGCTCCTTC
TGTATGCTCTACACTAACAATATATCGATTATGCCTTGATGTGTCTGATG
GTACATTTAGGTTAAGGCCAAAGTTTACTAGTGTGGAATGAGGTTTTTCA
CATGATAGACATGAGCCTTGTAAGCTCAAACACTATCACATACTAAAGAC
AGAGTGGGAGTATTgattcactttttgaaaatattgttgtACCTCATTAT
AAAACTCTCTAATTATTGAAGaacatattttgaaataaaaatgaaagatg
aTTATTAAAGAACTGCTTGCGTGTTGAATCAACACATTACCCCTTTCCAA
AAGTTGACCAGCAGAAACTTTGTACACAAGAGTTATTTATATTGCTGCTC
TCAGGAAGACTTGGATAATGTTTAAACACTTAACCTCATTATTTACGTAT
TATAATTCGTCAAAAAGAGCCTCATTGACATTGACCAAGTAATTTTGTAC
TATAATTCTAAAACATGTATTTCATCCTAGTTAAATTATTATATTCAATA
TGACATAAATGTTAGTCGAAACGTTAGATGTTTCATTGATGATTTACATC
GAACTTTTGGCTGTGTTGGGTTTTCATCGAAAATGAGATCATCCTATTGA
ACTATAAGCAAAATATTCCTGGCTTCTTGtcgctacacgttttttttttt
ataagaacaaactatataagaacataaggcttcgaggcccaaaaatttaa
gaacattctaagaacatactaaggctttg
Run BLAST on NCBI

protein sequence of TCONS_00000631-protein

>TCONS_00000631-protein ID=TCONS_00000631-protein|Name=TCONS_00000631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MIKTPYKMSVNGSSNSASAQSWEGLRKKARVLENELEMKLVSFSKLGINQ
QKGYQKVEEKEALLGSSSDTMFETMSLEIEKLLSNLTEVNDSMSAFLSDM
SIGEANSAQLHTMQRHRDILQDYSHEFSKTKANIQATKEREDLLGSVRRD
IYEYKTGANRRTDLYLKENDHLKNSDRMADEIIDMAMTTKENLGSQRRLF
SNISNRVVSLTNRFPVINSLVQKINVRKRRDTLILGFVVSLCIILLLLYA
LH
Run BLAST on NCBI

transcript from alignment at sc0000002:490638..492266

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000631 ID=TCONS_00000631|Name=TCONS_00000631|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at sc0000002:490638..492266 (Clytia hemisphaerica)
caaagccttagtatgttcttagaatgttcttaaatttttgggcctcgaag
ccttatgttcttatatagtttgttcttataaaaaaaaaaacgtgtagcga
CAAGAAGCCAGGAATATTTTGCTTATAGTTCAATAGGATGATCTCATTTT
CGATGAAAACCCAACACAGCCAAAAGTTCGATGTAAATCATCAATGAAAC
ATCTAACGTTTCGACTAACATTTATGTCATATTGAATATAATAATTTAAC
TAGGATGAAATACATGTTTTAGAATTATAGTACAAAATTACTTGGTCAAT
GTCAATGAGGCTCTTTTTGACGAATTATAATACGTAAATAATGAGGTTAA
GTGTTTAAACATTATCCAAGTCTTCCTGAGAGCAGCAATATAAATAACTC
TTGTGTACAAAGTTTCTGCTGGTCAACTTTTGGAAAGGGGTAATGTGTTG
ATTCAACACGCAAGCAGTTCTTTAATAAtcatctttcatttttatttcaa
aatatgttCTTCAATAATTAGAGAGTTTTATAATGAGGTacaacaatatt
ttcaaaaagtgaatcAATACTCCCACTCTGTCTTTAGTATGTGATAGTGT
TTGAGCTTACAAGGCTCATGTCTATCATGTGAAAAACCTCATTCCACACT
AGTAAACTTTGGCCTTAACCTAAATGTACCATCAGACACATCAAGGCATA
ATCGATATATTGTTAGTGTAGAGCATACAGAAGGAGCAGTATAATACACA
ACGAAACAACAAAACCAAGAATCAAAGTATCTCTTCGCTTGCGGACATTG
ATTTTTTGTACCAAACTGTTGATTACTGGGAATCGATTGGTCAAACTAAC
CACTCTGTTAGATATATTGCTGAAAAGTCGTCGTTGTGATCCCAAATTTT
CTTTAGTTGTCATTGCCATATCAATAATTTCATCAGCCATTCGGTCAGAA
TTTTTCAGATggtcattttctttcaaatataaGTCTGTTCTTCGGTTAGC
ACCAGTTTTATATTCGTAAATATCTCTCCTGACTGAGCCCAATAGATCTT
CTCTTTCCTTGGTTGCTTGAATGTTAGCTTTGGTTTTTGAGAACTCATGT
GAATAATCTTGCAGAATGTCACGATGTCTTTGCATAGTGTGAAGCTGTGC
AGAATTAGCTTCCCCAATACTCATATCAGATAGAAAAGCAGACATACTGT
CATTAACCTCAGTGAGGTTactcaaaagtttttcaatttccaaagaCATG
GTTTCAAACATTGTATCTGAACTTGATCCAAGTAAGGCTTCTTTCTCTTC
AACCTTCTGATATCCTTTTTGTTGATTTATGCCCAACTTGCTGAATGATA
CAAGTTTCATTTCAAGCTCATTCTCCAATACTCGAGCTTTCTTTCTAAGT
CCTTCCCAGCTTTGAGCGGAAGctgaatttgaacttccattGACTGACAT
TTTGTAAGGTGTTTTGATCATACTTtcattctttaaaaatatctacaaaa
atgCTAAATAGTTATGCTCATTGCCTATACAGgtttacaaagaaaagaaa
tttagacAGATGTATAGGGTTAACCCTCTTTTTCtaagatttttaaagaa
ttatCTGAATTTCTCACACAATAGATAAA

Coding sequence (CDS) from alignment at sc0000002:490638..492266

>TCONS_00000631 ID=TCONS_00000631|Name=TCONS_00000631|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0000002:490638..492266 (Clytia hemisphaerica)
TTAGTGTAGAGCATACAGAAGGAGCAGTATAATACACAACGAAACAACAA
AACCAAGAATCAAAGTATCTCTTCGCTTGCGGACATTGATTTTTTGTACC
AAACTGTTGATTACTGGGAATCGATTGGTCAAACTAACCACTCTGTTAGA
TATATTGCTGAAAAGTCGTCGTTGTGATCCCAAATTTTCTTTAGTTGTCA
TTGCCATATCAATAATTTCATCAGCCATTCGGTCAGAATTTTTCAGATgg
tcattttctttcaaatataaGTCTGTTCTTCGGTTAGCACCAGTTTTATA
TTCGTAAATATCTCTCCTGACTGAGCCCAATAGATCTTCTCTTTCCTTGG
TTGCTTGAATGTTAGCTTTGGTTTTTGAGAACTCATGTGAATAATCTTGC
AGAATGTCACGATGTCTTTGCATAGTGTGAAGCTGTGCAGAATTAGCTTC
CCCAATACTCATATCAGATAGAAAAGCAGACATACTGTCATTAACCTCAG
TGAGGTTactcaaaagtttttcaatttccaaagaCATGGTTTCAAACATT
GTATCTGAACTTGATCCAAGTAAGGCTTCTTTCTCTTCAACCTTCTGATA
TCCTTTTTGTTGATTTATGCCCAACTTGCTGAATGATACAAGTTTCATTT
CAAGCTCATTCTCCAATACTCGAGCTTTCTTTCTAAGTCCTTCCCAGCTT
TGAGCGGAAGctgaatttgaacttccattGACTGACATTTTGTAAGGTGT
TTTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000377XLOC_000377Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000631-proteinTCONS_00000631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000631-exon-sc0000002-1491911889:490638..492266TCONS_00000631-exon-sc0000002-1491911889:490638..492266Clytia hemisphaericaexon
TCONS_00000631-exon-sc0000002-1510915933:490638..492266TCONS_00000631-exon-sc0000002-1510915933:490638..492266Clytia hemisphaericaexon
TCONS_00000631-exon-sc0000002-1575043694:490638..492266TCONS_00000631-exon-sc0000002-1575043694:490638..492266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:490638..492266 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.5423	20.1189	6.03129	2.76546	36.211	26.3772	30.9124	29.8553	21.1204	18.8156	16.6321	12.7643	11.4611	8.8971	11.2706	11.3258	20.7322	20.3098	10.7169	14.6863	22.7916	20.7368	38.1752	38.7874	16.1498	17.9711	33.8145	25.1092	34.2734	36.293
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023601Golgi_SNAP_su1
Vocabulary: Cellular Component
TermDefinition
GO:0005801cis-Golgi network
GO:0016021integral component of membrane
GO:0000139Golgi membrane
Vocabulary: Biological Process
TermDefinition
GO:0006888ER to Golgi vesicle-mediated transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00000631 vs. Swiss-Prot (Human)
Match: GOSR1 (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.342e-79
Identity = 125/235 (53.19%), Postives = 172/235 (73.19%), Query Frame = 3 
Query:  204 SASAQSWEGLRKKARVLENELEMKLVSFSKLGINQQKGYQK--------VEEKEALLGSSSDTMFETMSLEIEKLLSNLTEVNDSMSAFLSDMSIGEANSAQLHTMQRHRDILQDYSHEFSKTKANIQATKEREDLLGSVRRDIYEYKTGA---NRRTDLYLKENDHLKNSDRMADEIIDMAMTTKENLGSQRRLFSNISNRVVSLTNRFPVINSLVQKINVRKRRDTLILGFVV 875
            + ++  WE LRK+AR LENEL++KLVSFSKL  +      +         +    L GSS D MFETM++EIE+LL+ LT VND M+ + +   +   N+A +HT+QRHRDILQDY+HEF KTKAN  A +ERE+L+GSVR+DI  YK+G+   NRRT+L+LKE+DHL+NSDR+ +E I +AM TKEN+ SQR +  +I +++ +L NRFP +NSL+Q+IN+RKRRD+LILG V+
Sbjct:    3 AGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVI 237
The following BLAST results are available for this feature:
BLAST of TCONS_00000631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GOSR11.342e-7953.19Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
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