TCONS_00000682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000682
Unique NameTCONS_00000682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000682 ID=TCONS_00000682|Name=TCONS_00000682|organism=Clytia hemisphaerica|type=transcript|length=349bp
TTTGGAATCTCTTGCATCATTTCGAAATGATCTAGCCAGATTGGGCGAAG
TTCGTCTGGAATCTTATCGTCCCAGTCGAGTTGTCGAGTTGAAAGTTCGT
GGAGATCGAGCTTGAGAGTAGCAACAATTGGTGCGATTCGTCCGGTAAGG
TCGAAGATTTCTCCGACTTTAGAAGCACAGTGACGTCTTGTCAATCGTTC
TGGGATGATATTGATGGTTTCAGTTGATTTCTTCCCTCTACGTTtctttg
agaaattcaattcgGATATATTGATTGAGAGCTCATCGGTTTTGGGGTGC
CATATCATGCCTCCGACGCCAATTGTGACACCATCATCCGTTAGCTGTT
Run BLAST on NCBI

protein sequence of TCONS_00000682-protein

>TCONS_00000682-protein ID=TCONS_00000682-protein|Name=TCONS_00000682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
QLTDDGVTIGVGGMIWHPKTDELSINISELNFSKKRRGKKSTETINIIPE
RLTRRHCASKVGEIFDLTGRIAPIVATLKLDLHELSTRQLDWDDKIPDEL
RPIWLDHFEMMQEIP
Run BLAST on NCBI

transcript from alignment at sc0000002:1729124..1729472

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000682 ID=TCONS_00000682|Name=TCONS_00000682|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0000002:1729124..1729472 (Clytia hemisphaerica)
AACAGCTAACGGATGATGGTGTCACAATTGGCGTCGGAGGCATGATATGG
CACCCCAAAACCGATGAGCTCTCAATCAATATATCcgaattgaatttctc
aaagaAACGTAGAGGGAAGAAATCAACTGAAACCATCAATATCATCCCAG
AACGATTGACAAGACGTCACTGTGCTTCTAAAGTCGGAGAAATCTTCGAC
CTTACCGGACGAATCGCACCAATTGTTGCTACTCTCAAGCTCGATCTCCA
CGAACTTTCAACTCGACAACTCGACTGGGACGATAAGATTCCAGACGAAC
TTCGCCCAATCTGGCTAGATCATTTCGAAATGATGCAAGAGATTCCAAA

Coding sequence (CDS) from alignment at sc0000002:1729124..1729472

>TCONS_00000682 ID=TCONS_00000682|Name=TCONS_00000682|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000002:1729124..1729472 (Clytia hemisphaerica)
CAGCTAACGGATGATGGTGTCACAATTGGCGTCGGAGGCATGATATGGCA
CCCCAAAACCGATGAGCTCTCAATCAATATATCcgaattgaatttctcaa
agaAACGTAGAGGGAAGAAATCAACTGAAACCATCAATATCATCCCAGAA
CGATTGACAAGACGTCACTGTGCTTCTAAAGTCGGAGAAATCTTCGACCT
TACCGGACGAATCGCACCAATTGTTGCTACTCTCAAGCTCGATCTCCACG
AACTTTCAACTCGACAACTCGACTGGGACGATAAGATTCCAGACGAACTT
CGCCCAATCTGGCTAGATCATTTCGAAATGATGCAAGAGATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000428XLOC_000428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000682-proteinTCONS_00000682-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000682-exon-sc0000002-1491911889:1729124..1729472TCONS_00000682-exon-sc0000002-1491911889:1729124..1729472Clytia hemisphaericaexon
TCONS_00000682-exon-sc0000002-1510915933:1729124..1729472TCONS_00000682-exon-sc0000002-1510915933:1729124..1729472Clytia hemisphaericaexon
TCONS_00000682-exon-sc0000002-1575043694:1729124..1729472TCONS_00000682-exon-sc0000002-1575043694:1729124..1729472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1729124..1729472 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25533	0.804863	0.286926	1.12285	1.36696	0.270048	0.977403	0.806532	0.213545	0	0	0.168771	0.337073	0	0	0.154422	0	0.194985	0	0.563779	0.490026	1.33807	0	1.05663	2.4487	1.21411	0.347478	0.370838	2.72993	2.71918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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