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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000807 ID=TCONS_00000807|Name=TCONS_00000807|organism=Clytia hemisphaerica|type=transcript|length=1179bp
TCGTGATGTTCTTGATGGTCACAAATGGTAAGAATTTCTGCAAGGTTGAG
TTTTATTTTTCCACTTGTGCTATTTTAAAGATTTGATAGGAAGGATGGAT
ATTAGGCTTTGGCGGGGTAAAAGGTTGCTATATGATTTGGCAGATGCACT
GGTTTTGACtcacaaaaattttcaactttattCTTAACcaaaagtatttt
gaaaatttgttcttagaaaaagaaatttaaaaggtTTCACTgtaaattgt
ttgttttaattCATGTCTAGGAGATGCCCTCGACCTTGTCAAAGAACTCT
TAGTTTGCGCGATGGatcattttttgcacagtggCCGAAGATACGGTTGG
GAAGATTGTTTATGGTAATTTATTATTGGTCCAACAACATAGGTGTTACA
AAAATCGAGACGATGACTGATTTGCCTTTAAAAACTGTTCTTGCTGTATG
TCAGTCACTACGTACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTG
TTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCAT
CACAGACAAAGAAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGT
ATTTGGAATGGTGGACACCCAATTTGCTCCTGCCCGCGGGTACATGGAAA
TAGTACAAAGGAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAAT
TTGGCAGCAAACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATAA
CCTGGCACTGTATGTCCCAAACTGTATCCAGCATGATCGTGTGAAGGTAT
CATTTTGTGGACCCAAATACTGGAGCACACACACAGTGATTGGTATGGTT
TAGATGCCCCTTTGGACAATATCATCCAAGCTATCAACATCGACTATCCA
CTATAGAAGATGATTCATCTCCTTGGCTGCTTACAAACTTAACCGatctt
ttgttactttttatttattagtttttgtcACATTACATACTTTATAAGCT
TTGATCATATATGTCACATTATCGTACACATGTAAATAGCTAAACCTATA
TAcaattcccggggggggggtactagggcaagatggttacggggatgctc
cgctggtcagggtaccttttttgacctccacgagtcccaggtagggtcgc
aaaaacaccaaaatagaaaaatcagtccc Run BLAST on NCBI transcript from alignment at sc0000005:467528..469429- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000807 ID=TCONS_00000807|Name=TCONS_00000807|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at sc0000005:467528..469429- (Clytia hemisphaerica)
TCGTGATGTTCTTGATGGTCACAAATGGTAAGAATTTCTGCAAGGTTGAG
TTTTATTTTTCCACTTGTGCTATTTTAAAGATTTGATAGGAAGGATGGAT
ATTAGGCTTTGGCGGGGTAAAAGGTTGCTATATGATTTGGCAGATGCACT
GGTTTTGACTCACAAAAATTTTCAACTTTATTCTTAACCAAAAGTATTTT
GAAAATTTGTTCTTAGAAAAAGAAATTTAAAAGGTTTCACTGTAAATTGT
TTGTTTTAATTCATGTCTAGGAGATGCCCTCGACCTTGTCAAAGAACTCT
TAGTTTGCGCGATGGATCATTTTTTGCACAGTGGCCGAAGATACGGTTGG
GAAGATTGTTTATGGTAATTTATTATTGGTCCAACAACATAGGTGTTACA
AAAATCGAGACGATGACTGATTTGCCTTTAAAAACTGTTCTTGCTGTATG
TCAGTCACTACGTACAGTTTGTGGTAATCATCTACAGCGGAATCCAATTG
TTGTTGGAGGGGGTGGTTTCGTTGTACAGATTGATGAAACAATGATGCAT
CACAGACAAAGAGTGAGTCTAAGATTTTTACCTATACTTAGTTGCTTCGA
CAAAAAGTACGCAAGGTCGAGATGAAATTTGTAATGTTTCTGTATGGAGG
AATAGTACTAATAGTAATAATGACAATTGAGTAGTAAATCTTCAATTTTT
CAACTTAGCCCCTTCTGTACTTTGTTTTCGTTATTTTTTTTGTTACCTAC
AGAATGGTGTAGGAAGAGCAGCCCAACAGCCAGTTTGGGTATTTGGAATG
GTGGACACCCAATTTGCTCCTGCCCGCGGGTACATGGAAATAGTACAAAG
GAGAGACCGTGCAACATTGACCGGTGTGATCAATAGAAATTTGGCAGCAA
ACAGCACCATTCATTCGGACTCCTGGGCTGCATACAATAACCTGGCACTG
TATGTCCCAAACTGTATCCAGCATGATCGTGTGAAGGTATCATTTTGTGG
ACCCAAATACTGGAGCACACACACAGGTTTGTTATTAGTTTACGCTTGAT
TAACGTTTATGGTTCAACTTGATTAAATATAACGCAATAATTTGAAGGGA
AAAATTTTAAGTCGACGAAGCGGAAAATATCTTTTTTACGGTACTTTTTT
GAAAATATGTCTTTGAAGCTTAAAGTACATTTTTAACAACTCTTCTCTTT
TAAGAACATCGAGTCCTACTGGAACAGATTTAAGCATGGAATTAAATCAA
TGAAAGGGGTTAGAAGAGTGGATCTGACCAGTTATTTGAAGGAATTTATA
TGGCGGTAAGTTGAATTTGCTCAATCTTTTGAACAATTTGCTAGCATTTA
TTGTACTAAATAGATGAATAAGTGATGTTATTTGTTTTTCTTCTCTAGTG
ATTGGTATGGTTTAGATGCCCCTTTGGACAATATCATCCAAGCTATCAAC
ATCGACTATCCACTATAGAAGGTAAAAGCAGTAGATTTCTAACATTCACA
TTCTTAAATTTTGAGATTGTTTAGAGAATATGGGTTTTTACCACGTTTTC
CATGTGCAGTATTTGAGAATTATTGCATTTTCCCAAAGCTCAAATTTTTC
TGTTGTAACAGTTTTATTTTCTACATTTTCAGATGATTCATCTCCTTGGC
TGCTTACAAACTTAACCGATCTTTTGTTACTTTTTATTTATTAGTTTTTG
TCACATTACATACTTTATAAGCTTTGATCATATATGTCACATTATCGTAC
ACATGTAAATAGCTAAACCTATATACAATTCCCGGGGGGGGGGTACTAGG
GCAAGATGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTTTTGACCT
CCACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTC
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000807-exon-sc0000005-1575043694:468868..469429 | TCONS_00000807-exon-sc0000005-1575043694:468868..469429 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1575043694:468404..468677 | TCONS_00000807-exon-sc0000005-1575043694:468404..468677 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1575043694:467959..468031 | TCONS_00000807-exon-sc0000005-1575043694:467959..468031 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1575043694:467528..467797 | TCONS_00000807-exon-sc0000005-1575043694:467528..467797 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1510915933:468868..469429 | TCONS_00000807-exon-sc0000005-1510915933:468868..469429 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1510915933:468404..468677 | TCONS_00000807-exon-sc0000005-1510915933:468404..468677 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1510915933:467959..468031 | TCONS_00000807-exon-sc0000005-1510915933:467959..468031 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1510915933:467528..467797 | TCONS_00000807-exon-sc0000005-1510915933:467528..467797 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1491911889:468868..469429 | TCONS_00000807-exon-sc0000005-1491911889:468868..469429 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1491911889:468404..468677 | TCONS_00000807-exon-sc0000005-1491911889:468404..468677 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1491911889:467959..468031 | TCONS_00000807-exon-sc0000005-1491911889:467959..468031 | Clytia hemisphaerica | exon |
| TCONS_00000807-exon-sc0000005-1491911889:467528..467797 | TCONS_00000807-exon-sc0000005-1491911889:467528..467797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:467528..469429 - |
Blast
The following BLAST results are available for this feature:
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