TCONS_00001219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001219
Unique NameTCONS_00001219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001219 ID=TCONS_00001219|Name=TCONS_00001219|organism=Clytia hemisphaerica|type=transcript|length=2317bp
ataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGG
CTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAAC
AATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttga
tgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTA
AAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGAT
TCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAA
GATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCC
AACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATT
ATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaa
caaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTG
TCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATT
GTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGT
TGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCA
TTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGG
GTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCAC
AGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATG
ATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAA
TCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTG
GAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTG
AACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAA
ATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGG
AGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGA
AAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTG
CTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAA
TTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGG
TATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTG
TTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACG
TTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTT
ATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATG
GTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAA
TGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTAT
TGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCT
TATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAG
CGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCG
TTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACA
AACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGA
AGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGG
CTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATG
TGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGC
CGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTAC
GTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCT
ATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATT
CAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGA
TGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCC
GAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCA
ATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCT
TGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147608-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001219 ID=TCONS_00001219|Name=TCONS_00001219|organism=Clytia hemisphaerica|type=transcript|length=10760bp|location=Sequence derived from alignment at sc0000007:1136849..1147608- (Clytia hemisphaerica)
ATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGG
CTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTT
CATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAAC
CATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAA
TCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGA
AGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACC
AAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACA
TGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAA
GCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTAT
CACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTT
TCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAAC
AAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGC
ATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTT
TCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATG
AAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTA
AAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCA
ATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAG
TAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTA
TTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATG
ATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCAT
TTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTT
TTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTT
CTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGA
TCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATT
TTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGG
TAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTT
TAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAAT
GATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAAT
TTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAA
TATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTT
TGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATT
GATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGG
CTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCA
CCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAA
ACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGA
TCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTG
GTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATAT
AAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTT
TGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATT
TTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGT
CTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCT
GTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTAC
TATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAG
CTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGA
TAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTT
CTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCAT
CTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAG
ATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACC
CAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAA
CTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAG
TCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTT
CTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGC
TATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCA
AGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAG
AGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGT
GTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAA
TGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCC
CAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGAC
TTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATC
TCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGT
TTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAA
AGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAG
CTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATAC
TCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAG
ATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTT
AACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTT
TAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCT
TTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGT
CTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTAT
ATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTC
AAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTT
GTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAAT
TCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAA
AAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACT
GTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGG
GAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGT
TTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTT
AAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTT
GAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAAT
CATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACAC
AAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGA
TTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACC
GTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAA
GAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCA
CGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTC
CCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGA
TGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGT
CAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCC
CGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATA
CACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTG
TAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTT
AATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGT
ATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATA
TCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAG
GGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATC
TATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAA
AATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTT
TCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACC
ACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAA
TATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCT
TTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTA
AGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATT
GTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATAT
AACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAAC
TGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGT
GAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTA
AAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACT
GACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGT
TGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCG
CAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTAT
AAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTT
GTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGG
CATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGT
ATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTA
ATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTC
TTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAA
TAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAA
TCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGT
TTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAA
TGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATT
ACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTG
CAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGA
TTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAA
ACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAA
GAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTT
TTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACA
TATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTT
TTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACT
GAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACT
GTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGA
CTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTT
GAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAAT
CTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGG
ATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCAT
TGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAA
AAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTAT
TTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTG
TCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATC
TTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAAT
TTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAA
GGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTC
TCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTT
TTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATG
TTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCT
TTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTA
ACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATT
TCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAA
TCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAA
ATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAA
TATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGAT
GTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTT
GGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCT
TAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATA
AGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTT
TGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTC
AGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTA
AAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATT
ACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCT
AAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACT
TTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAA
TTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAAC
AGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGAT
ATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGAT
TTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATA
ATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAA
TTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTG
GACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTT
TCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAA
AAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAAC
GTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTT
CTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCA
GTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTT
AATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACAT
GATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTC
TCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCT
CAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGA
ATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGT
AATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAA
AGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTC
TCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACT
ATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGT
GGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCAC
CTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCAT
TTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTAT
TTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAAT
TTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCT
AAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATG
AGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCA
ATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAG
AAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTG
AGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATC
TGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCT
TCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATG
ATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAG
CCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATC
AAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCAT
GTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGT
GATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGC
TAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTC
TTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCA
GCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTAT
TGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCT
TTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGT
ATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGA
AACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAG
AGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGA
TTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGA
TTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGG
TGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAAT
CAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATC
ATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTT
GCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGAT
GTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCA
AAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTG
ATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTT
AGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001219-exon-sc0000007-1575043694:1147551..1147608TCONS_00001219-exon-sc0000007-1575043694:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1147213..1147356TCONS_00001219-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146533..1146645TCONS_00001219-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146360..1146399TCONS_00001219-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146129..1146197TCONS_00001219-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1145570..1145649TCONS_00001219-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1145206..1145293TCONS_00001219-exon-sc0000007-1575043694:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1143435..1143537TCONS_00001219-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1143110..1143342TCONS_00001219-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1141089..1141184TCONS_00001219-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1140241..1140303TCONS_00001219-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1140002..1140100TCONS_00001219-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139822..1139875TCONS_00001219-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139532..1139635TCONS_00001219-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139169..1139254TCONS_00001219-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138935..1138999TCONS_00001219-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138765..1138812TCONS_00001219-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138480..1138647TCONS_00001219-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1137666..1137802TCONS_00001219-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1137340..1137447TCONS_00001219-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1136849..1137209TCONS_00001219-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1147551..1147608TCONS_00001219-exon-sc0000007-1510915933:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1147213..1147356TCONS_00001219-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146533..1146645TCONS_00001219-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146360..1146399TCONS_00001219-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146129..1146197TCONS_00001219-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1145570..1145649TCONS_00001219-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1145206..1145293TCONS_00001219-exon-sc0000007-1510915933:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1143435..1143537TCONS_00001219-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1143110..1143342TCONS_00001219-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1141089..1141184TCONS_00001219-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1140241..1140303TCONS_00001219-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1140002..1140100TCONS_00001219-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139822..1139875TCONS_00001219-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139532..1139635TCONS_00001219-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139169..1139254TCONS_00001219-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138935..1138999TCONS_00001219-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138765..1138812TCONS_00001219-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138480..1138647TCONS_00001219-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1137666..1137802TCONS_00001219-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1137340..1137447TCONS_00001219-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1136849..1137209TCONS_00001219-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1147551..1147608TCONS_00001219-exon-sc0000007-1491911889:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1147213..1147356TCONS_00001219-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146533..1146645TCONS_00001219-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146360..1146399TCONS_00001219-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146129..1146197TCONS_00001219-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1145570..1145649TCONS_00001219-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1145206..1145293TCONS_00001219-exon-sc0000007-1491911889:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1143435..1143537TCONS_00001219-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1143110..1143342TCONS_00001219-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1141089..1141184TCONS_00001219-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1140241..1140303TCONS_00001219-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1140002..1140100TCONS_00001219-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139822..1139875TCONS_00001219-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139532..1139635TCONS_00001219-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139169..1139254TCONS_00001219-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138935..1138999TCONS_00001219-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138765..1138812TCONS_00001219-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138480..1138647TCONS_00001219-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1137666..1137802TCONS_00001219-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1137340..1137447TCONS_00001219-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1136849..1137209TCONS_00001219-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000165929	4.06035e-06	1.27535e-08	2.3593e-07	1.17209e-06	0	0.000228403	1.32943e-07	2.19899e-08	2.19877e-08	4.95153e-08	3.2323e-08	0	0	0	0	2.07966e-10	1.23698e-08	0	2.58146e-09	1.60984e-10	0	8.55089e-07	3.14726e-08	7.00989e-10	7.4278e-08	0	1.55926e-05	1.81603e-05	1.50637e-08
Blast
[Close]
BLAST of TCONS_00001219 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2 
Query:   20 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2296
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
back to top