TCONS_00001248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001248
Unique NameTCONS_00001248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=transcript|length=2857bp
TTTCAgtcaaataaaaatcaaaacttatgTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGCTT
TTCTGGTGCATCGAAGCATGGTCGATATTGTTCAATCACAATCCAATCAA
ACTTTGAACCTTGGGAACAAACTATCAGTACTCGGCGGTGACTTCTTGTT
AGCCAAAGCATCTCTCGAACTCGGTAAACTTGAAAACACGAAGGTGGTGG
AGATGGTGTCACAAGCGATTGGTCACCTCTCCGAGGGAGCAACCATCGAA
CGAACGCACTCCTCTTTTGATGATTTGAAAAGTTGGGAGGATTTCATTTT
CTTGTTGAGAGGGAGTTTGCTGGCGCACAGTTGCCGCTCTGCTGTTCAGG
TGGTCGGACATCCTGAAAAAGTATGTGAAGATGCTTACAACTTTGGAATG
AATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATATAGAGGTTTaccaaaa
taataagaaaattcTTACGAACTCAAATTTCGTATTAATGCTGGCTCGAA
ATACGTCAAAGGAAATCAATGAGAATTGTAAGGCTATAGACCACCAAGAG
CCTGATATAAACTCAACCAAAACACTTAAGAACACGATAGAACAAGACAT
GCCAGACATTGTAAACAAGACTCGATTACACTACGAAGAACATTATTTAT
CTCGGTGTCGATCAAGTATCGAGTATTTTCCAAATGCGAATTCTGTACAA
GCTATAAATGATATTCTCAGCACGTTGTCACAAGAATAACAGTGAAAAGC
ATCAGATCATTACATAAAAGTTGATGCTGTGGACGTAAACCATCATTTGT
TTGACTGTGACAAgacaagaaatgaaaaattccTGTCGTGCTTTTGTCTA
AATATACAGACTTTATGTAAAAGAAAATGTCGAAGTTGGTTACttttcga
attttggcaaatgTTCGAGATTGTTCTTTGCTTCATTTGTCATTAAAATG
GTATAAAAGGATGTTTTGAGTCGAAAGTCAAGACACACTCATCATAAAGA
TTGGAATAGTGAAGATACACAATTATAACATGTTCAAAATGGTGGCATCC
TACATCAAGATTCTCACTCTGGCCTCACTATGTCTCTTATGTCAAGGCAA
GGGATGTCATTACACAGAAGTCAGTATTGTTCTGGATGTCTCTGGAACCG
TTTATCCAACACATTACAAACAATCATTGAATTTCGTCAACCGAATTCTT
TCCATCATCAATATTTCACCAGAAAGCTCACTTGCTGGTGTGACCACGTT
CGCCACCAAAGCTGACGTCAGATTCTTTTGTGATCAACACTCTTCAAGCG
AGACTTTGGAGAAATCAATCATAGGATTACCATACACCTACACTGGTCCT
GGTGATATATTCACTAACCTTCGAGATGGACTGGTTAAGGGTCAGCAAGT
TTTGACAGGGCGTGGTTGTGGTCGGTTGAACGCCAAACAAATTATGGTTT
TAATCAGCGATGGGCGTGCTAATCGTGGAGAAGGAGGTTTTGATGGCATC
CGAGAAGAAGCGAAATCGATTCGTGATCAAGGGGTAACCATTGTTGCATT
GGGTGTTGGAGAACGTATCAAGATCGACTTGTTGAAGAACATCACTGCAA
GTGAAGAGCGTGTCACGACAAGTATTCACTTCGATGAAACCTTCATCAAC
AATGCTTTGCAAATcttgaagaaagaaaaatgcgGATCTGATAtcaaaac
aaaacaatgtcAATGTGAAGTACCAGAGGTGGTGAAAACGATTTCATCTT
CTACGTCTTTCGATCAATCGACCATTGCTTCTTCCAACAAAGgctCATGC
TATTTGGAGAAGGTAGCGAACGCTTCCAAAGAAACCCAAGTGTTGTACGA
AAAACATCAagcacaaaaaatcaaaaatgaagagTGCATGAAAAGTCTGA
AAGAAATGATTCTCAAAGGGCAGGGAAGTAAagaagaattagaaacattg
tTGGCAAGTTTTGAGACGTGTGCTCATATGGATTGTCGAATGAAGACTGT
CGAAGAGATAATCAACCAACGAAAAACCTTCCTGAAGAGCGAAACAGCCT
CTTGTGATGATTTTATCAAGAAAACAACCTAGATTCTTATTAAGATTAAA
TGGGAATGGCGCCTTGTAACCATTTTCGTTTTGAGATGAAACGTAAAACG
AGGCTTGCCTTTATTCTTTGTGAATTGGACTGAACTGCTATAGTTGCtag
tgtttttaattttttttctgaaattgtcACTTTGCATTTTACCGTCTTTA
TTGTATCCATTCGCGCTTCCATTGGGATGAAGTATGAGGTTATCTAGACC
CAGGTCCGCTTGAGAAAAGGTACAACAGACCCAGAAACAGCCTGGTATTC
CTCTATAACTTACAAAACTTTGTCAGTATTCGGGACTCACTTTCTACAAG
TGATGCTGAGTCTTTGTGGCATCTCTAAAAGTTACATTTTCACAATTGTG
TATTATA
Run BLAST on NCBI

protein sequence of TCONS_00001248-protein

>TCONS_00001248-protein ID=TCONS_00001248-protein|Name=TCONS_00001248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MFHRILRSLYKEQQRRANRLYSLWFTSNGNGVQKAITNAEKLVGYPTSYS
SLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPHIGHHLGGLWV
LLLSKAAGSGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVD
IVQSQSNQTLNLGNKLSVLGGDFLLAKASLELGKLENTKVVEMVSQAIGH
LSEGATIERTHSSFDDLKSWEDFIFLLRGSLLAHSCRSAVQVVGHPEKVC
EDAYNFGMNLALAQRCVEDIEVYQNNKKILTNSNFVLMLARNTSKEINEN
CKAIDHQEPDINSTKTLKNTIEQDMPDIVNKTRLHYEEHYLSRCRSSIEY
FPNANSVQAINDILSTLSQE
Run BLAST on NCBI

transcript from alignment at sc0000007:1289580..1295675-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=transcript|length=6096bp|location=Sequence derived from alignment at sc0000007:1289580..1295675- (Clytia hemisphaerica)
TTTCAGTCAAATAAAAATCAAAACTTATGTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGGTA
TTTTCAAGTTTCTATTGTAGGAACTCATGTTAAAACACCTCTGTCTCAGT
GCCCCGGTGAGATGTTGTTAGCCAGTGAGGACAAATCAAACGAGCCAATT
TATATGAAATTATTTTGTTTAAGATATCAATTGTTTACTCTTAGGTGCCA
AATAAACGCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCC
CCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCC
CCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGC
TTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGCTTGTTAA
TTTTTCGATTTTTTTCTCATTCAGTGGGACCTTATTAGGACCCCCCCCCC
GTTTATTAATTCTTGAAAAAATTCCCAGCTACAAAAAGGAAAATTCCTTG
TTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACACCTAAAAGTACA
GCAGCTAAAATCCAATAGAGATTCTCAAATTGCAAGTGCTTTCCTCAGTT
GGGATTAGAGTTTTCTATAGGTTTTAAATGGGGAAGAATTTCCGGGATAT
TTTCTCTCATCGTGGACGATCCTTTGGCCAATTTTACTTTCGACTATTTT
ACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATCGTTGNTCACT
ATTTTACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATTGTTCA
ATCACAATCCAATCAAACTTTGAACCTTGGGAACAAACTATCAGTACTCG
GCGGTGACTTCTTGTTAGCCAAAGCATCTCTCGAACTCGGTAAACTTGAA
AACACGAAGGTGGTGGAGATGGTGTCACAAGCGATTGGTCACCTCTCCGA
GGGAGCAACCATCGAACGAACGCACTCCTCTTTTGATGATTTGAAAAGTT
GGGAGGATTTCATTTTCTTGTTGAGAGGGAGTTTGCTGGCGCACAGTTGC
CGCTCTGCTGTTCAGGTGGTCGGACATCCTGAAAAAGTAAGTGAAAGATG
AATCTTTTGTTTTACATTATCATTTACCACTGTCTGGCTATCAAGAAATA
TTAAATGCTACAATAAAAGAAGTTATAGTTTTATTCTACTCTGATCGATT
TCTTGTGTGAATGTTTGGTCCATTTTCTGGGTAACTGTTTTTTTTAATTG
TTTTTACTGGAGCTTTTTTAAATTTTCATTAGCCCCCTTCTTACTAGAAA
TGTGTTTTTTGCACTTCTATTCTTTCATTGTGCAGGTATGTGAAGATGCT
TACAACTTTGGAATGAATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATAT
AGAGGTTTACCAAAATAATAAGAAAATTCTTACGAACTCAAATTTCGTAT
TAATGCTGGCTCGAAATACGTCAAAGGAAATCAATGAGAATTGTAAGGCT
ATAGACCACCAAGAGCCTGATATAAACTCAACCAAAACACTTAAGAACAC
GATAGAACAAGACATGCCAGACATTGTAAACAAGACTCGATTACACTACG
AAGAACATTATTTATCTCGGTGTCGATCAAGTATCGAGTATTTTCCAAAT
GCGAATTCTGTACAAGCTATAAATGATATTCTCAGCACGTTGTCACAAGA
ATAACAGTGAAAAGCATCAGGTATTATTCGTATGTCAAACCTTTCCTCTC
TTCCTGTCATCGGCTTATTAGTTTTCTGTCAAGTCCTTTATTTAAACAAT
GACGTCAATCTATCAACACCCAAAGGAGGTGGAGACCCCAAATCATTCAA
AAGAGGTATTTACGTAACTCTAAATAGATCGTCTCTTCACAAAATAGAAT
GCCTAAAATGACGGTATGCATTATACCATCAGCCAAACTTTGGTTAAATA
GTTTTATTCACTGTTGATACTGATTCTATTCACCTTCGAAACGGTTTTTT
CCGCAACATGAAACTTGGTCGGTTCTTTTTTTACACCCTCAAAAGTCTCT
TGAAGGGTTAAAAATTATAGATTAACAATCGAGTCTCTAAAAGGGTCCCA
AAATTACGAAATATAAATTATGACTCCCTCAAAGGGTCAAAATTCTCGCA
ATTTGGATTAAATTTTGGCTGAAAATTAGGAAGATAATCTCTCAAAAGGT
CGTAAAAACGTCTAAAAAGGGGCGAATTTCTGTCACCTCGCAAATTAGTA
CCCTCATCCACTTAACGTCCAAAGTGTCCAAACTTTAGTTTTCAGACAAA
CACTAAAAAACTGTATATTGGAAAGAGGATGCCATACTAATTAGTTATGA
TGACGTCATTTACATCTTCCTTAGAACTAGGAAATTTGGAAACAGTTGTG
GATCCCCGTTTCAACTTCCATACAAGTTATAAATCCTATATTGAGTTCCA
TTGAAGAAAGTTTGAATGGGAAATAGTTTGCATCGCTGAATGACTACTTC
ATAAATTCTTGTATAATTCGTTAAGTAAAATGTTTAAAGCATTTTTCGCA
TCACTTTTTCGCATACTTTTCCTACAATCGAGTAGTTGTATACTGTTGAG
ATTAAGTTCAAGCCATATGGATACAGTTAATTTTATTGGCATTGTTGATA
ACAGCAAATTCAACATGATAATCTTCTTGCGAAATATGTCAGGGTGTTTG
CGCTTTTAATCCTATCCAACACAGAATGTATAATTAATTTGTGAAGATTG
TTGCAATTTTCTGGGCTAAAAAAGATGGGTTGAGTTTAGTTGATTGATAT
CGATTTAGATCATTACATAAAAGTTGATGCTGTGGACGTAAACCATCATT
TGTTTGACTGTGACAAGACAAGAAATGAAAAATTCCTGTCGTGCTTTTGT
CTAAATATACAGACTTTATGTAAAAGAAAATGTCGAAGTTGGTTACTTTT
CGAATTTTGGCAAATGTTCGAGATTGTTCTTTGCTTCATTTGTCATTAAA
ATGGTATAAAAGGATGTTTTGAGTCGAAAGTCAAGACACACTCATCATAA
AGATTGGAATAGTGAAGATACACAATTATAACATGTTCAAAATGGTGGCA
TCCTACATCAAGATTCTCACTCTGGCCTCACTATGTCTCTTATGTCAAGG
TAAACTTGCTTTTGATTTCAGATTTTGTTTCAAACTTTCCAGAATGATTT
AAAAGCTTTTTCTCTGATGTCTATCCTCCCTAATTCATTCCCTAATTCGT
TTAGAATCAAAAGTATCAAAACGTTGAAAAGATATTTCTGAGGAAAAAGA
TAAGATATTTTATAAAAAAGTGAATAATCAAGAGAGAAATGAAGGTTTTT
CTGGTTATCCAAAATGCATTTTTCTAATATATAATATGTCTGATTTTAAA
TCTATGAACAGACCTAGATTTAGATAATAAGATACAGCCCTTTGACGCAG
CCACCATTTTTTTTCATATCCAGGCAAGGGATGTCATTACACAGAAGTCA
GTATTGTTCTGGATGTCTCTGGAACCGTTTATCCAACACATTACAAACAA
TCATTGAATTTCGTCAACCGAATTCTTTCCATCATCAATATTTCACCAGA
AAGCTCACTTGCTGGTGTGACCACGTTCGCCACCAAAGCTGACGTCAGAT
TCTTTTGTGATCAACACTCTTCAAGCGAGACTTTGGAGAAATCAATCATA
GGATTACCATACACCTACACTGGTCCTGGTGATATATTCACTAACCTTCG
AGATGGACTGGTTAAGGGTCAGCAAGTTTTGACAGGGCGTGGTTGTGGTC
GGTTGAACGCCAAACAAATTATGGTTTTAATCAGCGATGGGCGTGCTAAT
CGTGGAGAAGGAGGTACTTATTCTTTCTCAAAAACTCGCTAGACATCAGG
GTAGGCAAGACAGACAATTACAAACTCTTGTTTTTAGCAATAAGGACTGA
TTTCTCTCAACGAACAACGACGACTCCGCTTTGTAACTTGATTTAGCCAA
AATCTATGGAATTCATATATTTTATACATTCAAATATTTTTCTTGAGGTC
ATATTATTTTTTTCTGTTATAAGGTTTTGATGGCATCCGAGAAGAAGCGA
AATCGATTCGTGATCAAGGGGTAACCATTGTTGCATTGGGTGTTGGAGAA
CGTATCAAGATCGACTTGTTGAAGAACATCACTGCAAGTGAAGAGCGTGT
CACGACAAGTATTCACTTCGATGAAACCTTCATCAACAATGCTTTGCAAA
TCTTGAAGAAAGAAAAATGCGGATCTGATAGTAAGTGCAAAATTTCTTCC
TCACATATAGCTAATAAGATATGGAAAACCACGTTTTACTACCCTAAAAT
TTTCTTTATCTGGACAAAGGATGGTCTGGCATCAATTCTTGTCTGTTTGT
ACAAACCGACGAGAGAAAAGAAGTTATAACAGTATCACCTAGGAAATTCC
TCTCAACCCTTCCTCAAGCTCTAAACAAGAATCTCTATCTTTATCGTTCA
GTCAAAACAAAACAATGTCAATGTGAAGTACCAGAGGTGGTGAAAACGAT
TTCATCTTCTACGTCTTTCGATCAATCGACCATTGCTTCTTCCAACAAAG
GTAACTACTATTTCTCTCATTTCGTATCACTTAAAATTGAGAATTCTGCT
CGTCCAGGTAGGAATCAAAATACATATTACCGAGCTGAAAATATCAAAAA
TGGTGAATATAAAATATGCTAAATTTAGGTTATTTGCAAAAATAATAGGG
ACTTCCCCTTGGGGCATAAGATTTAAAACTTTTCTCTCGACATATTAAGA
TATTTGGGAAAATTAGAAAACAGAGTCAACGATCGTTGGAATTGGAAAAA
AAGAAACAAATCAACCAACTGGTGGCATCTACTAACGAATTTGTGCTCCT
TTACTACCTGGGGTTTTGTAGAGGTCTGCAATTCAGACTAATGGGGCTCC
TTTTTGACCAGAGAGCATTTCAATCCCATACTTGATCTGAAAGTTAAGAT
TTCACTTACGTTGTATTGTTTTTATTTTTAGGCTCATGCTATTTGGAGAA
GGTAGCGAACGCTTCCAAAGAAACCCAAGTGTTGTACGAAAAACATCAAG
CACAAAAAATCAAAAATGAAGAGTGCATGAAAAGTCTGAAAGAAATGATT
CTCAAAGGGCAGGGAAGTAAAGAAGAATTAGAAACATTGTTGGCAAGTTT
TGAGACGTGTGCTCATATGGATTGTCGAATGAAGACTGTCGAAGAGATAA
TCAACCAACGAAAAACCTTCCTGAAGAGCGAAACAGCCTCTTGTGATGAT
TTTATCAAGAAAACAACCTAGATTCTTATTAAGATTAAATGGGAATGGCG
CCTTGTAACCATTTTCGTTTTGAGATGAAACGTAAAACGAGGCTTGCCTT
TATTCTTTGTGAATTGGACTGAACTGCTATAGTTGCTAGTGTTTTTAATT
TTTTTTCTGAAATTGTCACTTTGCATTTTACCGTCTTTATTGTATCCATT
CGCGCTTCCATTGGGATGAAGTATGAGGTTATCTAGACCCAGGTCCGCTT
GAGAAAAGGTACAACAGACCCAGAAACAGCCTGGTATTCCTCTATAACTT
ACAAAACTTTGTCAGTATTCGGGACTCACTTTCTACAAGTGATGCTGAGT
CTTTGTGGCATCTCTAAAAGTTACATTTTCACAATTGTGTATTATA

Coding sequence (CDS) from alignment at sc0000007:1289580..1295675-

>TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0000007:1289580..1295675- (Clytia hemisphaerica)
GTATGTGAAGATGCTTACAACTTTGGAATGAATTTGGCTCTGGCTCAAAG
GTGTGTGGAAGATATAGAGGTTTACCAAAATAATAAGAAAATTCTTACGA
ACTCAAATTTCGTATTAATGCTGGCTCGAAATACGTCAAAGGAAATCAAT
GAGAATTGTAAGGCTATAGACCACCAAGAGCCTGATATAAACTCAACCAA
AACACTTAAGAACACGATAGAACAAGACATGCCAGACATTGTAAACAAGA
CTCGATTACACTACGAAGAACATTATTTATCTCGGTGTCGATCAAGTATC
GAGTATTTTCCAAATGCGAATTCTGTACAAGCTATAAATGATATTCTCAG
CACGTTGTCACAAGAATAACTTTTCTGGTGCATCGAAGCATGGTCGATAT
TGTTCAATCACAATCCAATCAAACTTTGAACCTTGGGAACAAACTATCAG
TACTCGGCGGTGACTTCTTGTTAGCCAAAGCATCTCTCGAACTCGGTAAA
CTTGAAAACACGAAGGTGGTGGAGATGGTGTCACAAGCGATTGGTCACCT
CTCCGAGGGAGCAACCATCGAACGAACGCACTCCTCTTTTGATGATTTGA
AAAGTTGGGAGGATTTCATTTTCTTGTTGAGAGGGAGTTTGCTGGCGCAC
AGTTGCCGCTCTGCTGTTCAGGTGGTCGGACATCCTGAAAAAATGTTTCA
TCGCATCTTGAGATCTCTTTATAAAGAACAACAACGAAGAGCAAATCGTT
TGTACTCCTTATGGTTCACTAGCAATGGGAATGGTGTACAAAAAGCCATC
ACCAATGCTGAAAAACTGGTCGGTTATCCAACCTCTTACAGTAGCTTGAA
ATACTTAGCTGAAGAGGAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGC
TCGTTGGGAGTGGTCATCCTCTTCTATCAACAGCCCGTGACCTGCTCTCG
CAAGACCCTCATATCGGGCACCATCTTGGTGGATTATGGGTACTGCTTCT
CTCCAAAGCTGCTGGTAGTGGTGATGATCTAGATGTTCTGCAAAGTGAAT
TAGTAAATGGTATACACCAAAAACAACGAGCTATTGCCGATACTACTGAA
TTGATCAATACAGGTATGTGAAGATGCTTACAACTTTGGAATGAATTTGG
CTCTGGCTCAAAGGTGTGTGGAAGATATAGAGGTTTACCAAAATAATAAG
AAAATTCTTACGAACTCAAATTTCGTATTAATGCTGGCTCGAAATACGTC
AAAGGAAATCAATGAGAATTGTAAGGCTATAGACCACCAAGAGCCTGATA
TAAACTCAACCAAAACACTTAAGAACACGATAGAACAAGACATGCCAGAC
ATTGTAAACAAGACTCGATTACACTACGAAGAACATTATTTATCTCGGTG
TCGATCAAGTATCGAGTATTTTCCAAATGCGAATTCTGTACAAGCTATAA
ATGATATTCTCAGCACGTTGTCACAAGAATAACTTTTCTGGTGCATCGAA
GCATGGTCGATATTGTTCAATCACAATCCAATCAAACTTTGAACCTTGGG
AACAAACTATCAGTACTCGGCGGTGACTTCTTGTTAGCCAAAGCATCTCT
CGAACTCGGTAAACTTGAAAACACGAAGGTGGTGGAGATGGTGTCACAAG
CGATTGGTCACCTCTCCGAGGGAGCAACCATCGAACGAACGCACTCCTCT
TTTGATGATTTGAAAAGTTGGGAGGATTTCATTTTCTTGTTGAGAGGGAG
TTTGCTGGCGCACAGTTGCCGCTCTGCTGTTCAGGTGGTCGGACATCCTG
AAAAAATGTTTCATCGCATCTTGAGATCTCTTTATAAAGAACAACAACGA
AGAGCAAATCGTTTGTACTCCTTATGGTTCACTAGCAATGGGAATGGTGT
ACAAAAAGCCATCACCAATGCTGAAAAACTGGTCGGTTATCCAACCTCTT
ACAGTAGCTTGAAATACTTAGCTGAAGAGGAGCCTGCGAACTTTCTTGGT
TTGGCGAAGAAGCTCGTTGGGAGTGGTCATCCTCTTCTATCAACAGCCCG
TGACCTGCTCTCGCAAGACCCTCATATCGGGCACCATCTTGGTGGATTAT
GGGTACTGCTTCTCTCCAAAGCTGCTGGTAGTGGTGATGATCTAGATGTT
CTGCAAAGTGAATTAGTAAATGGTATACACCAAAAACAACGAGCTATTGC
CGATACTACTGAATTGATCAATACAGGTATGTGAAGATGCTTACAACTTT
GGAATGAATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATATAGAGGTTTA
CCAAAATAATAAGAAAATTCTTACGAACTCAAATTTCGTATTAATGCTGG
CTCGAAATACGTCAAAGGAAATCAATGAGAATTGTAAGGCTATAGACCAC
CAAGAGCCTGATATAAACTCAACCAAAACACTTAAGAACACGATAGAACA
AGACATGCCAGACATTGTAAACAAGACTCGATTACACTACGAAGAACATT
ATTTATCTCGGTGTCGATCAAGTATCGAGTATTTTCCAAATGCGAATTCT
GTACAAGCTATAAATGATATTCTCAGCACGTTGTCACAAGAATAACTTTT
CTGGTGCATCGAAGCATGGTCGATATTGTTCAATCACAATCCAATCAAAC
TTTGAACCTTGGGAACAAACTATCAGTACTCGGCGGTGACTTCTTGTTAG
CCAAAGCATCTCTCGAACTCGGTAAACTTGAAAACACGAAGGTGGTGGAG
ATGGTGTCACAAGCGATTGGTCACCTCTCCGAGGGAGCAACCATCGAACG
AACGCACTCCTCTTTTGATGATTTGAAAAGTTGGGAGGATTTCATTTTCT
TGTTGAGAGGGAGTTTGCTGGCGCACAGTTGCCGCTCTGCTGTTCAGGTG
GTCGGACATCCTGAAAAAATGTTTCATCGCATCTTGAGATCTCTTTATAA
AGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTTCACTAGCA
ATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAACTGGTCGGT
TATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAGGAGCCTGC
GAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCATCCTCTTC
TATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCGGGCACCAT
CTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGTAGTGGTGA
TGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACACCAAAAAC
AACGAGCTATTGCCGATACTACTGAATTGATCAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000668XLOC_000668Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001248-proteinTCONS_00001248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001248-exon-sc0000007-1575043694:1295229..1295675TCONS_00001248-exon-sc0000007-1575043694:1295229..1295675Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1294190..1294512TCONS_00001248-exon-sc0000007-1575043694:1294190..1294512Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1293556..1293940TCONS_00001248-exon-sc0000007-1575043694:1293556..1293940Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1292127..1292467TCONS_00001248-exon-sc0000007-1575043694:1292127..1292467Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1291413..1291802TCONS_00001248-exon-sc0000007-1575043694:1291413..1291802Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1290996..1291202TCONS_00001248-exon-sc0000007-1575043694:1290996..1291202Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1290676..1290774TCONS_00001248-exon-sc0000007-1575043694:1290676..1290774Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1575043694:1289580..1290244TCONS_00001248-exon-sc0000007-1575043694:1289580..1290244Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1295229..1295675TCONS_00001248-exon-sc0000007-1510915933:1295229..1295675Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1294190..1294512TCONS_00001248-exon-sc0000007-1510915933:1294190..1294512Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1293556..1293940TCONS_00001248-exon-sc0000007-1510915933:1293556..1293940Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1292127..1292467TCONS_00001248-exon-sc0000007-1510915933:1292127..1292467Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1291413..1291802TCONS_00001248-exon-sc0000007-1510915933:1291413..1291802Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1290996..1291202TCONS_00001248-exon-sc0000007-1510915933:1290996..1291202Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1290676..1290774TCONS_00001248-exon-sc0000007-1510915933:1290676..1290774Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1510915933:1289580..1290244TCONS_00001248-exon-sc0000007-1510915933:1289580..1290244Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1295229..1295675TCONS_00001248-exon-sc0000007-1491911889:1295229..1295675Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1294190..1294512TCONS_00001248-exon-sc0000007-1491911889:1294190..1294512Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1293556..1293940TCONS_00001248-exon-sc0000007-1491911889:1293556..1293940Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1292127..1292467TCONS_00001248-exon-sc0000007-1491911889:1292127..1292467Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1291413..1291802TCONS_00001248-exon-sc0000007-1491911889:1291413..1291802Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1290996..1291202TCONS_00001248-exon-sc0000007-1491911889:1290996..1291202Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1290676..1290774TCONS_00001248-exon-sc0000007-1491911889:1290676..1290774Clytia hemisphaericaexon
TCONS_00001248-exon-sc0000007-1491911889:1289580..1290244TCONS_00001248-exon-sc0000007-1491911889:1289580..1290244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1289580..1295675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147906	0.578146	0.0263383	0.2863	3.14016	2.13834	2.92093	2.69061	2.61	1.58856	0.528654	1.76242	1.95287	2.25761	1.11804	1.66029	70.0619	45.5329	0.876792	1.38828	2.89063	2.92617	0.897972	1.07716	3.63155	4.33638	14.0122	0.750009	0.776446	0.466641
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom
IPR000092Polyprenyl_synt
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
Blast
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BLAST of TCONS_00001248 vs. Swiss-Prot (Human)
Match: DLP1 (Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.960e-40
Identity = 100/255 (39.22%), Postives = 160/255 (62.75%), Query Frame = 3 
Query:  126 KAITNAEKLVGYPTSYSSLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPXXXXXXXXXXXXXXSKAAG-SGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVDIVQSQSN----QTLNLGNKLSVLGGDFLLAKASLELGKLENTKVVEMVSQAIGHLSEGATIERTHSS----FDD--LKSWEDFIFLLRGSLLAHSCRSAVQVVGHPEKVCEDAYNFGMNLALAQRCVEDIEVYQNNK 857
            + ++ AEK+VGYPTS+ SL+ L  +E +N     +KLVG+ HPLL+TAR L+  D      L GL VLL+SKAAG S  +      ++V+GI+  QR++A+ TELI+ A LVHR +V++ + QS+    + +  GNK+++L GDFLLA A   L  L+NTKVVE+++ A+  L +G   E + S      DD  + +W++  FL  G+LLA SC++A+++  H  +V   A+ +G ++A++ +   D++ +   K
Sbjct:   51 QVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARGLV-HDSWNSLQLRGLVVLLISKAAGPSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEK 304
The following BLAST results are available for this feature:
BLAST of TCONS_00001248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLP11.960e-4039.22Decaprenyl-diphosphate synthase subunit 2 OS=Homo ... [more]
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