TCONS_00001249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001249
Unique NameTCONS_00001249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3999

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001249 ID=TCONS_00001249|Name=TCONS_00001249|organism=Clytia hemisphaerica|type=transcript|length=3999bp
GTGCAATTATGATCACGATTATGACGTTGATTACTAGACTTCATCTCTTT
ATCTTTTCAgtcaaataaaaatcaaaacttatgTTTCATCGCATCTTGAG
ATCTCTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTAT
GGTTCACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAA
AAACTGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGA
AGAGGAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTG
GTCATCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCAT
ATCGGGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGC
TGGTAGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTA
TACACCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACA
GCTTTTCTGGTGCATCGAAGCATGGTCGATATTGTTCAATCACAATCCAA
TCAAACTTTGAACCTTGGGAACAAACTATCAGTACTCGGCGGTGACTTCT
TGTTAGCCAAAGCATCTCTCGAACTCGGTAAACTTGAAAACACGAAGGTG
GTGGAGATGGTGTCACAAGCGATTGGTCACCTCTCCGAGGGAGCAACCAT
CGAACGAACGCACTCCTCTTTTGATGATTTGAAAAGTTGGGAGGATTTCA
TTTTCTTGTTGAGAGGGAGTTTGCTGGCGCACAGTTGCCGCTCTGCTGTT
CAGGTGGTCGGACATCCTGAAAAAGTATGTGAAGATGCTTACAACTTTGG
AATGAATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATATAGAGGTTTacc
aaaataataagaaaattcTTACGAACTCAAATTTCGTATTAATGCTGGCT
CGAAATACGTCAAAGGAAATCAATGAGAATTGTAAGGCTATAGACCACCA
AGAGCCTGATATAAACTCAACCAAAACACTTAAGAACACGATAGAACAAG
ACATGCCAGACATTGTAAACAAGACTCGATTACACTACGAAGAACATTAT
TTATCTCGGTGTCGATCAAGTATCGAGTATTTTCCAAATGCGAATTCTGT
ACAAGCTATAAATGATATTCTCAGCACGTTGTCACAAGAATAACAGTGAA
AAGCATCAGGTATTATTCGTATGTCAAACCTTTCCTCTCTTCCTGTCATC
GGCTTATTAGTTTTCTGTCAAGTCCTTTATTTAAACAATGACGTCAATCT
ATCAACACCCAAAGGAGGTGGAGACCCCAAATCATTCAAAAGAGGTATTT
ACGTAACTCTAAATAGATCGTCTCTTCACAAAATAGAATGCCTAAAATGA
CGGTATGCATTATACCATCAGCCAAACTTTGGTTAAATAGTTTTATTCAC
TGTTGATACTGATTCTATTCACCTTCGAAACGGTTTTTTCCGCAACATGA
AACTTGGTCGGTTctttttttacaccctcaaaagtcTCTTGAAGGGTTAA
AAATTATAGATTAACAATCGAGTCTctaaaagggtcccaaaattacgaaa
tatAAATTATgactccctcaaagggtcaaAATTCTCGCAATTTGGattaa
attttggctgaaaattagGAAGATAATCTCTCAAAAGGTCGTAAAAACGT
CTAAAAAGGGGCGAATTTCTGTCACCTCGCAAATTAGTACCCTCATCCAC
TTAACGTCCAAAGTGTCCAAACTTTAGTTTTCAGACAAACACTAAAAAAC
TGTATATTGGAAAGAGGATGCCATACTAATTagttatgatgacgtcattt
acatCTTCCTTAGAACTAGGAAATTTGGAAACAGTTGTGGATCCCCGTTT
CAACTTCCATACAAGTTATAAATCCTATATTGAGTTCCATTGAAGAAAGT
TTGAATGGGAAATAGTTTGCATCGCTGAATGACTACTTCATAAATTCTTG
TATAATTCGTTAAGTAAAATGTTTAAAGCATTTTTCGCATCACTTTTTCG
CATACTTTTCCTACAATCGAGTAGTTGTATACTGTTGAGATTAAGTTCAA
GCCATATGGATACAGTTAATTTTATTGGCATTGTTGATAACAGCAAATTC
AACATGATAATCTTCTTGCGAAATATGTCAGGGTGTTTGCGCTTTTAATC
CTATCCAACACAGAATGTATAATTAATTTGTGAAGATTGTTGCAATTTTC
TGGGCTAAAAAAGATGGGTTGAGTTTAGTTGATTGATATCGATTTAGATC
ATTACATAAAAGTTGATGCTGTGGACGTAAACCATCATTTGTTTGACTGT
GACAAgacaagaaatgaaaaattccTGTCGTGCTTTTGTCTAAATATACA
GACTTTATGTAAAAGAAAATGTCGAAGTTGGTTACttttcgaattttggc
aaatgTTCGAGATTGTTCTTTGCTTCATTTGTCATTAAAATGGTATAAAA
GGATGTTTTGAGTCGAAAGTCAAGACACACTCATCATAAAGATTGGAATA
GTGAAGATACACAATTATAACATGTTCAAAATGGTGGCATCCTACATCAA
GATTCTCACTCTGGCCTCACTATGTCTCTTATGTCAAGGCAAGGGATGTC
ATTACACAGAAGTCAGTATTGTTCTGGATGTCTCTGGAACCGTTTATCCA
ACACATTACAAACAATCATTGAATTTCGTCAACCGAATTCTTTCCATCAT
CAATATTTCACCAGAAAGCTCACTTGCTGGTGTGACCACGTTCGCCACCA
AAGCTGACGTCAGATTCTTTTGTGATCAACACTCTTCAAGCGAGACTTTG
GAGAAATCAATCATAGGATTACCATACACCTACACTGGTCCTGGTGATAT
ATTCACTAACCTTCGAGATGGACTGGTTAAGGGTCAGCAAGTTTTGACAG
GGCGTGGTTGTGGTCGGTTGAACGCCAAACAAATTATGGTTTTAATCAGC
GATGGGCGTGCTAATCGTGGAGAAGGAGGTTTTGATGGCATCCGAGAAGA
AGCGAAATCGATTCGTGATCAAGGGGTAACCATTGTTGCATTGGGTGTTG
GAGAACGTATCAAGATCGACTTGTTGAAGAACATCACTGCAAGTGAAGAG
CGTGTCACGACAAGTATTCACTTCGATGAAACCTTCATCAACAATGCTTT
GCAAATcttgaagaaagaaaaatgcgGATCTGATAtcaaaacaaaacaat
gtcAATGTGAAGTACCAGAGGTGGTGAAAACGATTTCATCTTCTACGTCT
TTCGATCAATCGACCATTGCTTCTTCCAACAAAGgctCATGCTATTTGGA
GAAGGTAGCGAACGCTTCCAAAGAAACCCAAGTGTTGTACGAAAAACATC
AagcacaaaaaatcaaaaatgaagagTGCATGAAAAGTCTGAAAGAAATG
ATTCTCAAAGGGCAGGGAAGTAAagaagaattagaaacattgtTGGCAAG
TTTTGAGACGTGTGCTCATATGGATTGTCGAATGAAGACTGTCGAAGAGA
TAATCAACCAACGAAAAACCTTCCTGAAGAGCGAAACAGCCTCTTGTGAT
GATTTTATCAAGAAAACAACCTAGATTCTTATTAAGATTAAATGGGAATG
GCGCCTTGTAACCATTTTCGTTTTGAGATGAAACGTAAAACGAGGCTTGC
CTTTATTCTTTGTGAATTGGACTGAACTGCTATAGTTGCtagtgttttta
attttttttctgaaattgtcACTTTGCATTTTACCGTCTTTATTGTATCC
ATTCGCGCTTCCATTGGGATGAAGTATGAGGTTATCTAGACCCAGGTCCG
CTTGAGAAAAGGTACAACAGACCCAGAAACAGCCTGGTATTCCTCTATAA
CTTACAAAACTTTGTCAGTATTCGGGACTCACTTTCTACAAGTGATGCTG
AGTCTTTGTGGCATCTCTAAAAGTTACATTTTCACAATTGTGTATTATA
Run BLAST on NCBI

transcript from alignment at sc0000007:1289580..1295729-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001249 ID=TCONS_00001249|Name=TCONS_00001249|organism=Clytia hemisphaerica|type=transcript|length=6150bp|location=Sequence derived from alignment at sc0000007:1289580..1295729- (Clytia hemisphaerica)
GTGCAATTATGATCACGATTATGACGTTGATTACTAGACTTCATCTCTTT
ATCTTTTCAGTCAAATAAAAATCAAAACTTATGTTTCATCGCATCTTGAG
ATCTCTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTAT
GGTTCACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAA
AAACTGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGA
AGAGGAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTG
GTCATCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCAT
ATCGGGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGC
TGGTAGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTA
TACACCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACA
GGTATTTTCAAGTTTCTATTGTAGGAACTCATGTTAAAACACCTCTGTCT
CAGTGCCCCGGTGAGATGTTGTTAGCCAGTGAGGACAAATCAAACGAGCC
AATTTATATGAAATTATTTTGTTTAAGATATCAATTGTTTACTCTTAGGT
GCCAAATAAACGCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCA
ACCCCCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCC
CCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCC
CCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGCTTG
TTAATTTTTCGATTTTTTTCTCATTCAGTGGGACCTTATTAGGACCCCCC
CCCCGTTTATTAATTCTTGAAAAAATTCCCAGCTACAAAAAGGAAAATTC
CTTGTTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACACCTAAAAG
TACAGCAGCTAAAATCCAATAGAGATTCTCAAATTGCAAGTGCTTTCCTC
AGTTGGGATTAGAGTTTTCTATAGGTTTTAAATGGGGAAGAATTTCCGGG
ATATTTTCTCTCATCGTGGACGATCCTTTGGCCAATTTTACTTTCGACTA
TTTTACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATCGTTGNT
CACTATTTTACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATTG
TTCAATCACAATCCAATCAAACTTTGAACCTTGGGAACAAACTATCAGTA
CTCGGCGGTGACTTCTTGTTAGCCAAAGCATCTCTCGAACTCGGTAAACT
TGAAAACACGAAGGTGGTGGAGATGGTGTCACAAGCGATTGGTCACCTCT
CCGAGGGAGCAACCATCGAACGAACGCACTCCTCTTTTGATGATTTGAAA
AGTTGGGAGGATTTCATTTTCTTGTTGAGAGGGAGTTTGCTGGCGCACAG
TTGCCGCTCTGCTGTTCAGGTGGTCGGACATCCTGAAAAAGTAAGTGAAA
GATGAATCTTTTGTTTTACATTATCATTTACCACTGTCTGGCTATCAAGA
AATATTAAATGCTACAATAAAAGAAGTTATAGTTTTATTCTACTCTGATC
GATTTCTTGTGTGAATGTTTGGTCCATTTTCTGGGTAACTGTTTTTTTTA
ATTGTTTTTACTGGAGCTTTTTTAAATTTTCATTAGCCCCCTTCTTACTA
GAAATGTGTTTTTTGCACTTCTATTCTTTCATTGTGCAGGTATGTGAAGA
TGCTTACAACTTTGGAATGAATTTGGCTCTGGCTCAAAGGTGTGTGGAAG
ATATAGAGGTTTACCAAAATAATAAGAAAATTCTTACGAACTCAAATTTC
GTATTAATGCTGGCTCGAAATACGTCAAAGGAAATCAATGAGAATTGTAA
GGCTATAGACCACCAAGAGCCTGATATAAACTCAACCAAAACACTTAAGA
ACACGATAGAACAAGACATGCCAGACATTGTAAACAAGACTCGATTACAC
TACGAAGAACATTATTTATCTCGGTGTCGATCAAGTATCGAGTATTTTCC
AAATGCGAATTCTGTACAAGCTATAAATGATATTCTCAGCACGTTGTCAC
AAGAATAACAGTGAAAAGCATCAGGTATTATTCGTATGTCAAACCTTTCC
TCTCTTCCTGTCATCGGCTTATTAGTTTTCTGTCAAGTCCTTTATTTAAA
CAATGACGTCAATCTATCAACACCCAAAGGAGGTGGAGACCCCAAATCAT
TCAAAAGAGGTATTTACGTAACTCTAAATAGATCGTCTCTTCACAAAATA
GAATGCCTAAAATGACGGTATGCATTATACCATCAGCCAAACTTTGGTTA
AATAGTTTTATTCACTGTTGATACTGATTCTATTCACCTTCGAAACGGTT
TTTTCCGCAACATGAAACTTGGTCGGTTCTTTTTTTACACCCTCAAAAGT
CTCTTGAAGGGTTAAAAATTATAGATTAACAATCGAGTCTCTAAAAGGGT
CCCAAAATTACGAAATATAAATTATGACTCCCTCAAAGGGTCAAAATTCT
CGCAATTTGGATTAAATTTTGGCTGAAAATTAGGAAGATAATCTCTCAAA
AGGTCGTAAAAACGTCTAAAAAGGGGCGAATTTCTGTCACCTCGCAAATT
AGTACCCTCATCCACTTAACGTCCAAAGTGTCCAAACTTTAGTTTTCAGA
CAAACACTAAAAAACTGTATATTGGAAAGAGGATGCCATACTAATTAGTT
ATGATGACGTCATTTACATCTTCCTTAGAACTAGGAAATTTGGAAACAGT
TGTGGATCCCCGTTTCAACTTCCATACAAGTTATAAATCCTATATTGAGT
TCCATTGAAGAAAGTTTGAATGGGAAATAGTTTGCATCGCTGAATGACTA
CTTCATAAATTCTTGTATAATTCGTTAAGTAAAATGTTTAAAGCATTTTT
CGCATCACTTTTTCGCATACTTTTCCTACAATCGAGTAGTTGTATACTGT
TGAGATTAAGTTCAAGCCATATGGATACAGTTAATTTTATTGGCATTGTT
GATAACAGCAAATTCAACATGATAATCTTCTTGCGAAATATGTCAGGGTG
TTTGCGCTTTTAATCCTATCCAACACAGAATGTATAATTAATTTGTGAAG
ATTGTTGCAATTTTCTGGGCTAAAAAAGATGGGTTGAGTTTAGTTGATTG
ATATCGATTTAGATCATTACATAAAAGTTGATGCTGTGGACGTAAACCAT
CATTTGTTTGACTGTGACAAGACAAGAAATGAAAAATTCCTGTCGTGCTT
TTGTCTAAATATACAGACTTTATGTAAAAGAAAATGTCGAAGTTGGTTAC
TTTTCGAATTTTGGCAAATGTTCGAGATTGTTCTTTGCTTCATTTGTCAT
TAAAATGGTATAAAAGGATGTTTTGAGTCGAAAGTCAAGACACACTCATC
ATAAAGATTGGAATAGTGAAGATACACAATTATAACATGTTCAAAATGGT
GGCATCCTACATCAAGATTCTCACTCTGGCCTCACTATGTCTCTTATGTC
AAGGTAAACTTGCTTTTGATTTCAGATTTTGTTTCAAACTTTCCAGAATG
ATTTAAAAGCTTTTTCTCTGATGTCTATCCTCCCTAATTCATTCCCTAAT
TCGTTTAGAATCAAAAGTATCAAAACGTTGAAAAGATATTTCTGAGGAAA
AAGATAAGATATTTTATAAAAAAGTGAATAATCAAGAGAGAAATGAAGGT
TTTTCTGGTTATCCAAAATGCATTTTTCTAATATATAATATGTCTGATTT
TAAATCTATGAACAGACCTAGATTTAGATAATAAGATACAGCCCTTTGAC
GCAGCCACCATTTTTTTTCATATCCAGGCAAGGGATGTCATTACACAGAA
GTCAGTATTGTTCTGGATGTCTCTGGAACCGTTTATCCAACACATTACAA
ACAATCATTGAATTTCGTCAACCGAATTCTTTCCATCATCAATATTTCAC
CAGAAAGCTCACTTGCTGGTGTGACCACGTTCGCCACCAAAGCTGACGTC
AGATTCTTTTGTGATCAACACTCTTCAAGCGAGACTTTGGAGAAATCAAT
CATAGGATTACCATACACCTACACTGGTCCTGGTGATATATTCACTAACC
TTCGAGATGGACTGGTTAAGGGTCAGCAAGTTTTGACAGGGCGTGGTTGT
GGTCGGTTGAACGCCAAACAAATTATGGTTTTAATCAGCGATGGGCGTGC
TAATCGTGGAGAAGGAGGTACTTATTCTTTCTCAAAAACTCGCTAGACAT
CAGGGTAGGCAAGACAGACAATTACAAACTCTTGTTTTTAGCAATAAGGA
CTGATTTCTCTCAACGAACAACGACGACTCCGCTTTGTAACTTGATTTAG
CCAAAATCTATGGAATTCATATATTTTATACATTCAAATATTTTTCTTGA
GGTCATATTATTTTTTTCTGTTATAAGGTTTTGATGGCATCCGAGAAGAA
GCGAAATCGATTCGTGATCAAGGGGTAACCATTGTTGCATTGGGTGTTGG
AGAACGTATCAAGATCGACTTGTTGAAGAACATCACTGCAAGTGAAGAGC
GTGTCACGACAAGTATTCACTTCGATGAAACCTTCATCAACAATGCTTTG
CAAATCTTGAAGAAAGAAAAATGCGGATCTGATAGTAAGTGCAAAATTTC
TTCCTCACATATAGCTAATAAGATATGGAAAACCACGTTTTACTACCCTA
AAATTTTCTTTATCTGGACAAAGGATGGTCTGGCATCAATTCTTGTCTGT
TTGTACAAACCGACGAGAGAAAAGAAGTTATAACAGTATCACCTAGGAAA
TTCCTCTCAACCCTTCCTCAAGCTCTAAACAAGAATCTCTATCTTTATCG
TTCAGTCAAAACAAAACAATGTCAATGTGAAGTACCAGAGGTGGTGAAAA
CGATTTCATCTTCTACGTCTTTCGATCAATCGACCATTGCTTCTTCCAAC
AAAGGTAACTACTATTTCTCTCATTTCGTATCACTTAAAATTGAGAATTC
TGCTCGTCCAGGTAGGAATCAAAATACATATTACCGAGCTGAAAATATCA
AAAATGGTGAATATAAAATATGCTAAATTTAGGTTATTTGCAAAAATAAT
AGGGACTTCCCCTTGGGGCATAAGATTTAAAACTTTTCTCTCGACATATT
AAGATATTTGGGAAAATTAGAAAACAGAGTCAACGATCGTTGGAATTGGA
AAAAAAGAAACAAATCAACCAACTGGTGGCATCTACTAACGAATTTGTGC
TCCTTTACTACCTGGGGTTTTGTAGAGGTCTGCAATTCAGACTAATGGGG
CTCCTTTTTGACCAGAGAGCATTTCAATCCCATACTTGATCTGAAAGTTA
AGATTTCACTTACGTTGTATTGTTTTTATTTTTAGGCTCATGCTATTTGG
AGAAGGTAGCGAACGCTTCCAAAGAAACCCAAGTGTTGTACGAAAAACAT
CAAGCACAAAAAATCAAAAATGAAGAGTGCATGAAAAGTCTGAAAGAAAT
GATTCTCAAAGGGCAGGGAAGTAAAGAAGAATTAGAAACATTGTTGGCAA
GTTTTGAGACGTGTGCTCATATGGATTGTCGAATGAAGACTGTCGAAGAG
ATAATCAACCAACGAAAAACCTTCCTGAAGAGCGAAACAGCCTCTTGTGA
TGATTTTATCAAGAAAACAACCTAGATTCTTATTAAGATTAAATGGGAAT
GGCGCCTTGTAACCATTTTCGTTTTGAGATGAAACGTAAAACGAGGCTTG
CCTTTATTCTTTGTGAATTGGACTGAACTGCTATAGTTGCTAGTGTTTTT
AATTTTTTTTCTGAAATTGTCACTTTGCATTTTACCGTCTTTATTGTATC
CATTCGCGCTTCCATTGGGATGAAGTATGAGGTTATCTAGACCCAGGTCC
GCTTGAGAAAAGGTACAACAGACCCAGAAACAGCCTGGTATTCCTCTATA
ACTTACAAAACTTTGTCAGTATTCGGGACTCACTTTCTACAAGTGATGCT
GAGTCTTTGTGGCATCTCTAAAAGTTACATTTTCACAATTGTGTATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000668XLOC_000668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001249-exon-sc0000007-1575043694:1295229..1295729TCONS_00001249-exon-sc0000007-1575043694:1295229..1295729Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1294190..1294512TCONS_00001249-exon-sc0000007-1575043694:1294190..1294512Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1292127..1293940TCONS_00001249-exon-sc0000007-1575043694:1292127..1293940Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1291413..1291802TCONS_00001249-exon-sc0000007-1575043694:1291413..1291802Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1290996..1291202TCONS_00001249-exon-sc0000007-1575043694:1290996..1291202Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1290676..1290774TCONS_00001249-exon-sc0000007-1575043694:1290676..1290774Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1575043694:1289580..1290244TCONS_00001249-exon-sc0000007-1575043694:1289580..1290244Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1295229..1295729TCONS_00001249-exon-sc0000007-1510915933:1295229..1295729Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1294190..1294512TCONS_00001249-exon-sc0000007-1510915933:1294190..1294512Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1292127..1293940TCONS_00001249-exon-sc0000007-1510915933:1292127..1293940Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1291413..1291802TCONS_00001249-exon-sc0000007-1510915933:1291413..1291802Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1290996..1291202TCONS_00001249-exon-sc0000007-1510915933:1290996..1291202Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1290676..1290774TCONS_00001249-exon-sc0000007-1510915933:1290676..1290774Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1510915933:1289580..1290244TCONS_00001249-exon-sc0000007-1510915933:1289580..1290244Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1295229..1295729TCONS_00001249-exon-sc0000007-1491911889:1295229..1295729Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1294190..1294512TCONS_00001249-exon-sc0000007-1491911889:1294190..1294512Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1292127..1293940TCONS_00001249-exon-sc0000007-1491911889:1292127..1293940Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1291413..1291802TCONS_00001249-exon-sc0000007-1491911889:1291413..1291802Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1290996..1291202TCONS_00001249-exon-sc0000007-1491911889:1290996..1291202Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1290676..1290774TCONS_00001249-exon-sc0000007-1491911889:1290676..1290774Clytia hemisphaericaexon
TCONS_00001249-exon-sc0000007-1491911889:1289580..1290244TCONS_00001249-exon-sc0000007-1491911889:1289580..1290244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1289580..1295729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.779746	0.66648	0.316574	0.240892	0.418947	0.662115	0.639051	0.885107	0.492461	0.381339	1.29045	0.674848	0.511123	0.536422	0.173665	0.132517	0.372894	0.310748	0.0660484	0.103672	0.330404	0.222921	0.39182	0.388605	2.35712	1.88564	0.170392	0.136386	0.165075	0.316178
Blast
[Close]
BLAST of TCONS_00001249 vs. Swiss-Prot (Human)
Match: DLP1 (Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 4.985e-40
Identity = 100/255 (39.22%), Postives = 160/255 (62.75%), Query Frame = 3 
Query:  180 KAITNAEKLVGYPTSYSSLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPXXXXXXXXXXXXXXSKAAG-SGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVDIVQSQSN----QTLNLGNKLSVLGGDFLLAKASLELGKLENTKVVEMVSQAIGHLSEGATIERTHSS----FDD--LKSWEDFIFLLRGSLLAHSCRSAVQVVGHPEKVCEDAYNFGMNLALAQRCVEDIEVYQNNK 911
            + ++ AEK+VGYPTS+ SL+ L  +E +N     +KLVG+ HPLL+TAR L+  D      L GL VLL+SKAAG S  +      ++V+GI+  QR++A+ TELI+ A LVHR +V++ + QS+    + +  GNK+++L GDFLLA A   L  L+NTKVVE+++ A+  L +G   E + S      DD  + +W++  FL  G+LLA SC++A+++  H  +V   A+ +G ++A++ +   D++ +   K
Sbjct:   51 QVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARGLV-HDSWNSLQLRGLVVLLISKAAGPSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEK 304
The following BLAST results are available for this feature:
BLAST of TCONS_00001249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLP14.985e-4039.22Decaprenyl-diphosphate synthase subunit 2 OS=Homo ... [more]
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