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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001258 ID=TCONS_00001258|Name=TCONS_00001258|organism=Clytia hemisphaerica|type=transcript|length=3222bpRun BLAST on NCBI protein sequence of TCONS_00001258-protein >TCONS_00001258-protein ID=TCONS_00001258-protein|Name=TCONS_00001258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp MCRHLVVYILLVLASLYRSTHSAGTTPGIKEVFVGRCWQYQSISEHNKLPRun BLAST on NCBI transcript from alignment at sc0000007:1297246..1308991- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001258 ID=TCONS_00001258|Name=TCONS_00001258|organism=Clytia hemisphaerica|type=transcript|length=11746bp|location=Sequence derived from alignment at sc0000007:1297246..1308991- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1297246..1308991- >TCONS_00001258 ID=TCONS_00001258|Name=TCONS_00001258|organism=Clytia hemisphaerica|type=CDS|length=7392bp|location=Sequence derived from alignment at sc0000007:1297246..1308991- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001258 vs. Swiss-Prot (Human)
Match: CD38 (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 OS=Homo sapiens GN=CD38 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 5.098e-27 Identity = 79/260 (30.38%), Postives = 125/260 (48.08%), Query Frame = 3
Query: 1830 SAGTTPGIKEVFVGRCWQYQSISEHNKLPELKVNINCTKLWLAFYDSFAFKDPCTVGVDDYKTFFDMLHTSRKIKNALFWSGLHDLVTDFTFINDDYIVLEDTLTGYLLNNLNWCGGTDADGLNSTSCS---KTC--NVMTPAWTLASSEFAKRSTETAKVLLNATRANNKDAYADGSFFRTVEMPELQVDKLVVYLASSI--GKE-VRERCADSISMENIRADAEAKNIQVEC--IDQPSLVLNVYCLKYPKAKECVNK 2579
GTT E + RC +Y I PE++ +++C +W AF +F K PC + +DY+ + + L WS + DL FT + D LEDTL GYL ++L WCG + +N SC K C N ++ W S FA+ + + V+LN +R+ + S F +VE+ LQ +K+ A I G+E R+ C D +++ + + +NIQ C I +P L C+K P+ C ++
Sbjct: 52 GPGTTKRFPETVLARCVKYTEIH-----PEMR-HVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSK---IFDKNSTFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDP-TIKELESIISKRNIQFSCKNIYRPDKFLQ--CVKNPEDSSCTSE 299 HSP 2 Score: 102.834 bits (255), Expect = 2.580e-23 Identity = 70/224 (31.25%), Postives = 105/224 (46.88%), Query Frame = 1
Query: 1 HXNCTKLWLAFYDSFAFKDPCTVGVDDYKTFFYMLHTSRKIKNALFWSGMHDLVTDFTFINDDYIVIGDTLTGYLLNNLNWCGGTDADGLNSTSCP---KTC--NVMTPAWTLASSEFAKQATGVSKVLLNATRANNKDAYADGSFFRTVEMPELQVDKLVVYLASSI--GKE-VRETCNDSISMENIRKDAESRNIAIECFD--QPSLVLNVFCLKYPAAKEC 642
H +C +W AF +F K PC + +DY+ + + L WS + DL FT + D + DTL GYL ++L WCG + +N SCP K C N ++ W S FA+ A V V+LN +R+ + S F +VE+ LQ +K+ A I G+E R+ C D +++ + RNI C + +P L C+K P C
Sbjct: 79 HVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSK---IFDKNSTFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDP-TIKELESIISKRNIQFSCKNIYRPDKFLQ--CVKNPEDSSC 296 The following BLAST results are available for this feature:
BLAST of TCONS_00001258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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