TCONS_00001297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001297
Unique NameTCONS_00001297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001297 ID=TCONS_00001297|Name=TCONS_00001297|organism=Clytia hemisphaerica|type=transcript|length=735bp
CTTCAAAGTTTCCTTAAAATATCGATATTCGAGAAAAACAAAATCAGTTG
CGGGAATGACAATGGCACGGTTTAAAAACAGCATACCTTTAATACTGATT
GGAATTCTTCCTTTTTTACTTGCTCAAAGGTCTTGTATTGAAACTCAATG
CATTTCATACTTCAGTGGAATATGGGAGCCCACTACAGTTCCAATAGGAA
AATGCATCCAACAAATAGATGAGCTCATTGTACGTGAGAAACACTATGTG
AAGCCTTGGGGAAGTTGTCGAAGCACAGATTGTCTAAGAATGGCTCCTGG
CAGCAAAAAAGGAAGGGAGCGGGTTACGTGTAAGtcgtatttttttcatt
tcggaAAACTTATTCATCTTTTGCTATACCTGGTAAAGATAGAAGGTAGT
GAGGAAGTGAAAACGAGGGAAAGATAGCCGCTATCTTTCAACCAAACCAC
tactaagggggggggggtttgtaggggttcgaaataccgttttcccatca
aaatttttgctgaatcccggaatcccgaaaattggaaaaataataaaacc
gtcacaccggcttgtacagagcaaaaatgtacctaaataccgttttcccg
tctcttttttcgtcaaatcccgtaataccgtactaaaaaagggcaaatcc
cgtcacaccgtaaaagtacaaccccccctaCCAAGGGTGTTGTACCTTTT
TAAAATGCACTATTTCTTGTCATTATCTAACAATG
Run BLAST on NCBI

transcript from alignment at sc0000007:939357..940091

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001297 ID=TCONS_00001297|Name=TCONS_00001297|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at sc0000007:939357..940091 (Clytia hemisphaerica)
CATTGTTAGATAATGACAAGAAATAGTGCATTTTAAAAAGGTACAACACC
CTTGGtagggggggttgtacttttacggtgtgacgggatttgcccttttt
tagtacggtattacgggatttgacgaaaaaagagacgggaaaacggtatt
taggtacatttttgctctgtacaagccggtgtgacggttttattattttt
ccaattttcgggattccgggattcagcaaaaattttgatgggaaaacggt
atttcgaacccctacaaacccccccccccttagtaGTGGTTTGGTTGAAA
GATAGCGGCTATCTTTCCCTCGTTTTCACTTCCTCACTACCTTCTATCTT
TACCAGGTATAGCAAAAGATGAATAAGTTTtccgaaatgaaaaaaatacg
aCTTACACGTAACCCGCTCCCTTCCTTTTTTGCTGCCAGGAGCCATTCTT
AGACAATCTGTGCTTCGACAACTTCCCCAAGGCTTCACATAGTGTTTCTC
ACGTACAATGAGCTCATCTATTTGTTGGATGCATTTTCCTATTGGAACTG
TAGTGGGCTCCCATATTCCACTGAAGTATGAAATGCATTGAGTTTCAATA
CAAGACCTTTGAGCAAGTAAAAAAGGAAGAATTCCAATCAGTATTAAAGG
TATGCTGTTTTTAAACCGTGCCATTGTCATTCCCGCAACTGATTTTGTTT
TTCTCGAATATCGATATTTTAAGGAAACTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000701XLOC_000701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001297-exon-sc0000007-1491911889:939357..940091TCONS_00001297-exon-sc0000007-1491911889:939357..940091Clytia hemisphaericaexon
TCONS_00001297-exon-sc0000007-1510915933:939357..940091TCONS_00001297-exon-sc0000007-1510915933:939357..940091Clytia hemisphaericaexon
TCONS_00001297-exon-sc0000007-1575043694:939357..940091TCONS_00001297-exon-sc0000007-1575043694:939357..940091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:939357..940091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.513596	0.552389	1.16758	1.74327	0.402976	0.337786	0.811039	0.544565	0.284186	0.211206	0.068334	0.361342	0.629802	0.601599	0.0765986	0.270476	0	0.212667	0.0743256	0.301282	0.555834	0.749743	0.162471	0.141094	1.01702	1.12574	0.541334	0.531752	0.494191	0.269482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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