TCONS_00001298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001298
Unique NameTCONS_00001298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001298 ID=TCONS_00001298|Name=TCONS_00001298|organism=Clytia hemisphaerica|type=transcript|length=711bp
TTTGTTGGCGTTTTTTTGCGTGCTGATCAACCCGTTGGTGTATACTTTCA
GTGACAAACGATTTCGAAGTGATGTATGGGTCTTTTTCATAACAAAATTA
ATTTGTAGGCGAAGAAAACAAAGACAAGTTGAAATGGAAATGGGTGTCAG
GAGGGTGATCAACACAGGCCTCACTGAAGTTGCGTCAAAACAACCTAGCT
AGAACCTCTCCTCTTGTACACGGGTACtcagtgctaccattagggcacta
cttaaaaaaaaaaactgcgATCAAAAGATTTTTGCTTGGCTTGCTTGAGA
AATGTATGAAGCCAATCATTGCATCATTGTCCATTTAGACAATTCGTAAC
ACTTGTCAGCACTAAGTTCTATTGTTTTAATGTCGAGTGTGACAGTCTTT
TTCGAGCATAACAATGTATAATGGGTATGCTTGGTACTTTATTTTAGGTT
TCAAATGTTAATTGATACTACTTAACCCGGTACCAAGCCGAGCTAATAAT
AtaacaagaaagcctaagcggcGTAAAGGCCCAGCAGTGTTGGCACTGTC
AGCATATTTTTCCGCTGCAGAATCGGCAAACAACATGTACAACAGgagca
aattttttcaatgtatagaCTCGAGTCGGGCgagcaataaaaatttaatt
actttaaacttttttcttataattaagaaagaaagatttgaccatATAAG
TTAGAGGTATT
Run BLAST on NCBI

transcript from alignment at sc0000007:942791..943501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001298 ID=TCONS_00001298|Name=TCONS_00001298|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at sc0000007:942791..943501 (Clytia hemisphaerica)
AATACCTCTAACTTATatggtcaaatctttctttcttaattataagaaaa
aagtttaaagtaattaaatttttattgctcGCCCGACTCGAGtctataca
ttgaaaaaatttgctcCTGTTGTACATGTTGTTTGCCGATTCTGCAGCGG
AAAAATATGCTGACAGTGCCAACACTGCTGGGCCTTTACgccgcttaggc
tttcttgttaTATTATTAGCTCGGCTTGGTACCGGGTTAAGTAGTATCAA
TTAACATTTGAAACCTAAAATAAAGTACCAAGCATACCCATTATACATTG
TTATGCTCGAAAAAGACTGTCACACTCGACATTAAAACAATAGAACTTAG
TGCTGACAAGTGTTACGAATTGTCTAAATGGACAATGATGCAATGATTGG
CTTCATACATTTCTCAAGCAAGCCAAGCAAAAATCTTTTGATcgcagttt
ttttttttaagtagtgccctaatggtagcactgaGTACCCGTGTACAAGA
GGAGAGGTTCTAGCTAGGTTGTTTTGACGCAACTTCAGTGAGGCCTGTGT
TGATCACCCTCCTGACACCCATTTCCATTTCAACTTGTCTTTGTTTTCTT
CGCCTACAAATTAATTTTGTTATGAAAAAGACCCATACATCACTTCGAAA
TCGTTTGTCACTGAAAGTATACACCAACGGGTTGATCAGCACGCAAAAAA
ACGCCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000702XLOC_000702Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001298-exon-sc0000007-1491911889:942791..943501TCONS_00001298-exon-sc0000007-1491911889:942791..943501Clytia hemisphaericaexon
TCONS_00001298-exon-sc0000007-1510915933:942791..943501TCONS_00001298-exon-sc0000007-1510915933:942791..943501Clytia hemisphaericaexon
TCONS_00001298-exon-sc0000007-1575043694:942791..943501TCONS_00001298-exon-sc0000007-1575043694:942791..943501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:942791..943501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.282691	0.137834	0.665047	0.704578	0.667144	0.0753122	0.545166	0.614956	0.18622	0	0.358005	0.194166	0.208612	0.726623	0.331377	0.400048	0.977495	0.217514	0.150253	0.615469	0.504085	0.426434	0.226906	0.54905	1.51756	2.03159	0.290719	0	0.549089	0.399596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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