TCONS_00001301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001301
Unique NameTCONS_00001301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001301 ID=TCONS_00001301|Name=TCONS_00001301|organism=Clytia hemisphaerica|type=transcript|length=1884bp
AAGGAGTATTGTGTGTTCTAAAATTTATTTCGCTAAAGTTATTATTGTGT
ATGAATTCTAATATGTACATAAATAATAATGATGTAAAAGTTACAAAAGA
TGAAACCAGGAAAATAAATAAGATGTTATTATAAAACTAGCAATATTCAT
GGAACTTGCACGCCACACGTAAACCAACGAAGAGAGcgaacaagaagaag
aagactCCGAGAATCATAAAACAACAACATGTCTCTTTCGATACACACCG
CCCGTGAACATTCCTGTTTTTACGCGCCCTGATGATAAACGCCACGATAA
CGCCAATGGTGATAACCACGCCCAAACATACGCTCAAAATAATAAGAAGT
GTATATTCAGTGTCTTGCCTTGCTTTTTCACATTGGTCTCCATAGAAACC
TTTTAAACATTCACATTTGTATACAGTCTCGTTTACTTGTAGACAAGAAG
CCTCGTTTTGACACAAATGATCTTCGCACGAGTCATAAGTTTTACATAAA
GGTAAATGGATTTTCGATAACTGTCTGATATTCCGTCCTTTGAGACGGGG
TGGTGTTGCGCAATCACCTTGGAGTTCACCTTTCATGCGGAGGTCGATGA
TATTCCTGTGCATAAGCCAACAATCACATACTAACGGATTTCCTTTCATG
TTTATTTTGCCAAAGATAACCAGACTTGAAAACACATTATTTCGAATGGC
TTTTAAACGATTATTTTGCATGTCTAAAACGTGAATCTTTAAACCTTGGA
AACTACGGTCATCCAAAGTAGATATGAAGTTGTCTTTCAGAATGATGTCA
GTTAAATAACGAAAATTATTCATCACTCCTTTACGAACACGTTGTAACTG
ATTATGAGCTGCGTTGAACTTTTGTAACGAGACCAAACCGTTGAGTACTC
CTGCATAAAGAACGTCTATCTCATTATGATCAAGAAATAGCCTCTGTAAA
CTCGTCAAGCCTGTAAAAGCATCAATGGTGACTTTATGGAGCTTATTTCT
CGACAGGTATAAAGTTTTTAAACCATGCATTCTCGCAAACGAATAGGGCG
CCAAATATGTAATATTATTCCGTGATAAATCCAAGTCTGTGAGATTGGGC
AAATCCAAGTTTTGTGGAATATGTTCTATATTGTTCTTAGTTAGCGTCAA
GTGTTTCAAACTGAATAGATTCTTAGACATGTTCTTAGGAAAGTTCTTTA
TGTTGTTCTCATCTAAGAATAAGAACTTCAATTTATGGAAACGCCTGAAT
AATACAGGATCGAAAAGATGAAGGGAATTCCGTTTCAGATTGATCAATTC
TGTGCCATTTTCACATCCCTCCAAAGCTGTTGAAAGCTCTTCATCTGTGA
TATTCTTCTCTGATAATCTACAGTCTTTGCTCCAAACTTCAATTAATAAA
AAACTTGAAATCAAAAGCAAAACCATGTACAATTTCACACAAAACATTAT
TGCTTTTCTATCATATAACCTCTGCAGAGATTCTTCTTGTCACAGTTTGT
TCGTGTCTTGGTGTTCGGTCATATTTTCTTTGTCTGTGGTTGGTGGCCTT
TCGGAAAAGTTGTTTTATACACGATACTGTAATGTGTACTCTTCCGATTG
TTTGTGTTTCAATCTCTCCATCTGACTGTTTATTTTGATGAGCTTATCCT
TTCACTGTAGTCTGTCAGTTTTTCTCATTCTTGTGTAATGTTTCTTTCTA
AATCACTTATCAAAACATCAGTTTAGTACACTCCGTCACAGTAGGCTTTC
TCCTCAAAACGTTTTCAAACTCTCACAGTATCTCCAGGCGTGATAATCAA
GTAACTTGAAAGTACTTGTTAGCAGaacaaagattcctttgttcATCCAT
ATAGTGATATGCTTACATGAACTTTCGTAGGTAC
Run BLAST on NCBI

protein sequence of TCONS_00001301-protein

>TCONS_00001301-protein ID=TCONS_00001301-protein|Name=TCONS_00001301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp
MFCVKLYMVLLLISSFLLIEVWSKDCRLSEKNITDEELSTALEGCENGTE
LINLKRNSLHLFDPVLFRRFHKLKFLFLDENNIKNFPKNMSKNLFSLKHL
TLTKNNIEHIPQNLDLPNLTDLDLSRNNITYLAPYSFARMHGLKTLYLSR
NKLHKVTIDAFTGLTSLQRLFLDHNEIDVLYAGVLNGLVSLQKFNAAHNQ
LQRVRKGVMNNFRYLTDIILKDNFISTLDDRSFQGLKIHVLDMQNNRLKA
IRNNVFSSLVIFGKINMKGNPLVCDCWLMHRNIIDLRMKGELQGDCATPP
RLKGRNIRQLSKIHLPLCKTYDSCEDHLCQNEASCLQVNETVYKCECLKG
FYGDQCEKARQDTEYTLLIILSVCLGVVITIGVIVAFIIRARKNRNVHGR
CVSKETCCCFMILGVFFFLFALFVGLRVACKFHEYC
Run BLAST on NCBI

transcript from alignment at sc0000007:993235..995118

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001301 ID=TCONS_00001301|Name=TCONS_00001301|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at sc0000007:993235..995118 (Clytia hemisphaerica)
GTACCTACGAAAGTTCATGTAAGCATATCACTATATGGATgaacaaagga
atctttgttCTGCTAACAAGTACTTTCAAGTTACTTGATTATCACGCCTG
GAGATACTGTGAGAGTTTGAAAACGTTTTGAGGAGAAAGCCTACTGTGAC
GGAGTGTACTAAACTGATGTTTTGATAAGTGATTTAGAAAGAAACATTAC
ACAAGAATGAGAAAAACTGACAGACTACAGTGAAAGGATAAGCTCATCAA
AATAAACAGTCAGATGGAGAGATTGAAACACAAACAATCGGAAGAGTACA
CATTACAGTATCGTGTATAAAACAACTTTTCCGAAAGGCCACCAACCACA
GACAAAGAAAATATGACCGAACACCAAGACACGAACAAACTGTGACAAGA
AGAATCTCTGCAGAGGTTATATGATAGAAAAGCAATAATGTTTTGTGTGA
AATTGTACATGGTTTTGCTTTTGATTTCAAGTTTTTTATTAATTGAAGTT
TGGAGCAAAGACTGTAGATTATCAGAGAAGAATATCACAGATGAAGAGCT
TTCAACAGCTTTGGAGGGATGTGAAAATGGCACAGAATTGATCAATCTGA
AACGGAATTCCCTTCATCTTTTCGATCCTGTATTATTCAGGCGTTTCCAT
AAATTGAAGTTCTTATTCTTAGATGAGAACAACATAAAGAACTTTCCTAA
GAACATGTCTAAGAATCTATTCAGTTTGAAACACTTGACGCTAACTAAGA
ACAATATAGAACATATTCCACAAAACTTGGATTTGCCCAATCTCACAGAC
TTGGATTTATCACGGAATAATATTACATATTTGGCGCCCTATTCGTTTGC
GAGAATGCATGGTTTAAAAACTTTATACCTGTCGAGAAATAAGCTCCATA
AAGTCACCATTGATGCTTTTACAGGCTTGACGAGTTTACAGAGGCTATTT
CTTGATCATAATGAGATAGACGTTCTTTATGCAGGAGTACTCAACGGTTT
GGTCTCGTTACAAAAGTTCAACGCAGCTCATAATCAGTTACAACGTGTTC
GTAAAGGAGTGATGAATAATTTTCGTTATTTAACTGACATCATTCTGAAA
GACAACTTCATATCTACTTTGGATGACCGTAGTTTCCAAGGTTTAAAGAT
TCACGTTTTAGACATGCAAAATAATCGTTTAAAAGCCATTCGAAATAATG
TGTTTTCAAGTCTGGTTATCTTTGGCAAAATAAACATGAAAGGAAATCCG
TTAGTATGTGATTGTTGGCTTATGCACAGGAATATCATCGACCTCCGCAT
GAAAGGTGAACTCCAAGGTGATTGCGCAACACCACCCCGTCTCAAAGGAC
GGAATATCAGACAGTTATCGAAAATCCATTTACCTTTATGTAAAACTTAT
GACTCGTGCGAAGATCATTTGTGTCAAAACGAGGCTTCTTGTCTACAAGT
AAACGAGACTGTATACAAATGTGAATGTTTAAAAGGTTTCTATGGAGACC
AATGTGAAAAAGCAAGGCAAGACACTGAATATACACTTCTTATTATTTTG
AGCGTATGTTTGGGCGTGGTTATCACCATTGGCGTTATCGTGGCGTTTAT
CATCAGGGCGCGTAAAAACAGGAATGTTCACGGGCGGTGTGTATCGAAAG
AGACATGTTGTTGTTTTATGATTCTCGGagtcttcttcttcttgttcgCT
CTCTTCGTTGGTTTACGTGTGGCGTGCAAGTTCCATGAATATTGCTAGTT
TTATAATAACATCTTATTTATTTTCCTGGTTTCATCTTTTGTAACTTTTA
CATCATTATTATTTATGTACATATTAGAATTCATACACAATAATAACTTT
AGCGAAATAAATTTTAGAACACACAATACTCCTT

Coding sequence (CDS) from alignment at sc0000007:993235..995118

>TCONS_00001301 ID=TCONS_00001301|Name=TCONS_00001301|organism=Clytia hemisphaerica|type=CDS|length=1311bp|location=Sequence derived from alignment at sc0000007:993235..995118 (Clytia hemisphaerica)
ATGTTTTGTGTGAAATTGTACATGGTTTTGCTTTTGATTTCAAGTTTTTT
ATTAATTGAAGTTTGGAGCAAAGACTGTAGATTATCAGAGAAGAATATCA
CAGATGAAGAGCTTTCAACAGCTTTGGAGGGATGTGAAAATGGCACAGAA
TTGATCAATCTGAAACGGAATTCCCTTCATCTTTTCGATCCTGTATTATT
CAGGCGTTTCCATAAATTGAAGTTCTTATTCTTAGATGAGAACAACATAA
AGAACTTTCCTAAGAACATGTCTAAGAATCTATTCAGTTTGAAACACTTG
ACGCTAACTAAGAACAATATAGAACATATTCCACAAAACTTGGATTTGCC
CAATCTCACAGACTTGGATTTATCACGGAATAATATTACATATTTGGCGC
CCTATTCGTTTGCGAGAATGCATGGTTTAAAAACTTTATACCTGTCGAGA
AATAAGCTCCATAAAGTCACCATTGATGCTTTTACAGGCTTGACGAGTTT
ACAGAGGCTATTTCTTGATCATAATGAGATAGACGTTCTTTATGCAGGAG
TACTCAACGGTTTGGTCTCGTTACAAAAGTTCAACGCAGCTCATAATCAG
TTACAACGTGTTCGTAAAGGAGTGATGAATAATTTTCGTTATTTAACTGA
CATCATTCTGAAAGACAACTTCATATCTACTTTGGATGACCGTAGTTTCC
AAGGTTTAAAGATTCACGTTTTAGACATGCAAAATAATCGTTTAAAAGCC
ATTCGAAATAATGTGTTTTCAAGTCTGGTTATCTTTGGCAAAATAAACAT
GAAAGGAAATCCGTTAGTATGTGATTGTTGGCTTATGCACAGGAATATCA
TCGACCTCCGCATGAAAGGTGAACTCCAAGGTGATTGCGCAACACCACCC
CGTCTCAAAGGACGGAATATCAGACAGTTATCGAAAATCCATTTACCTTT
ATGTAAAACTTATGACTCGTGCGAAGATCATTTGTGTCAAAACGAGGCTT
CTTGTCTACAAGTAAACGAGACTGTATACAAATGTGAATGTTTAAAAGGT
TTCTATGGAGACCAATGTGAAAAAGCAAGGCAAGACACTGAATATACACT
TCTTATTATTTTGAGCGTATGTTTGGGCGTGGTTATCACCATTGGCGTTA
TCGTGGCGTTTATCATCAGGGCGCGTAAAAACAGGAATGTTCACGGGCGG
TGTGTATCGAAAGAGACATGTTGTTGTTTTATGATTCTCGGagtcttctt
cttcttgttcgCTCTCTTCGTTGGTTTACGTGTGGCGTGCAAGTTCCATG
AATATTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000705XLOC_000705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001301-proteinTCONS_00001301-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001301-exon-sc0000007-1491911889:993235..995118TCONS_00001301-exon-sc0000007-1491911889:993235..995118Clytia hemisphaericaexon
TCONS_00001301-exon-sc0000007-1510915933:993235..995118TCONS_00001301-exon-sc0000007-1510915933:993235..995118Clytia hemisphaericaexon
TCONS_00001301-exon-sc0000007-1575043694:993235..995118TCONS_00001301-exon-sc0000007-1575043694:993235..995118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:993235..995118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.084723	0.0619637	0.287783	0.445789	0.0285634	0	1.60664	1.78455	2.90932	4.68698	4.91409	1.02976	25.849	25.5278	40.7118	28.021	7.02793	20.1272	23.4613	28.3438	0.880586	1.10876	0.84999	1.43513	1.27349	2.04986	9.75845	12.8321	2.633	1.65268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00001301 vs. Swiss-Prot (Human)
Match: CHADL (Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.736e-18
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = -3 
Query:  509 NNITYLAPYSFARMHGLKTLYLSRNKLHKVTIDAFTGLTSLQRLFLDHNEIDVLYAGVLNGLVSLQKFNAAHNQLQRVRKGVMNNF-RYLTDIILKDNFISTLDDRSFQGL--KIHVLDMQNNRLKAIRNNVFSSLVIFGKINMKGNPLVCDCWL--MHRNIIDLRMKGELQGDCATPPRLKGRNIRQLSKI 1069
            N +  LAP    R   L+ +YLS N++ +V++ A      L++L LD N++  +  G L GL +L +   + N L+ +R G      R L  + L  + +  +   +F GL   +  L +Q N+L+A+      SL     I++  NP  CDC L  +HR +  L ++  +   CATPP  +G+ ++  + +
Sbjct:  531 NAVDRLAPGDLGRTRALRWVYLSGNRITEVSLGALGPARELEKLHLDRNQLREVPTGALEGLPALLELQLSGNPLRALRDGAFQPVGRSLQHLFLNSSGLEQICPGAFSGLGPGLQSLHLQKNQLRAL--PALPSLSQLELIDLSSNPFHCDCQLLPLHRWLTGLNLR--VGATCATPPNARGQRVKAAAAV 718
The following BLAST results are available for this feature:
BLAST of TCONS_00001301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHADL2.736e-1828.65Chondroadherin-like protein OS=Homo sapiens GN=CHA... [more]
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