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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001783 ID=TCONS_00001783|Name=TCONS_00001783|organism=Clytia hemisphaerica|type=transcript|length=1280bp
cttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGAA
TTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGA
AGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTTA
CTCCAAGCTaagtatattttattatttttttacaacttATATTGTTTTTT
TGGGATTAAAGAAAGTTATTAAAAAATGATAAGGAAGATTTAAGACAGAA
AAAAGGTACTatactgtttgaaatttttttatggcttTTGATGCATTTTT
TTTCAAGGACGATGTTGATATTATTTCATTGCTGTACATTATATGCTACA
TTGTATAGTAAAGAGAAAAGCAAGCTTGAAttacagattttgaaaataat
ttagatTTACTTTAGCTAGAGGATTCTGTTTTTATGTTGTGTTTGTTTGT
ATTCTCTTCATTTTGGTTTTACACATATTTTGATTTCGTCCATATTATag
taaaaatcttttgatcacTAAAGTGATGTTGCGTGTACATGGACATTGTT
TGAATTTCAAGGAAATTAACCCTAAACTAAGAGTTACAAATCCTTTTGTC
TGCACAAGTAAAACCAACTGGTTAGCCGAGATATCACTTGGAACTTTGAC
GTAAAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATG
AATAAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATA
ATTGATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACA
TACTGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACT
TTTCACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAA
CAGTACCCTttcaccttttttataagaaccaacgtttttttttaaccctt
gggatgttcttaactttttttttcttttaaaagcctaagaatatttttat
tttcatcttttagtgggtattttatccattttctgagaaattgggtctga
aatgtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaac
atgTGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGT
AATTTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaa
accagtaaatttttgctgaggctcggctgttcttattttttttggcactt
tgagccttgaattgttcttattttgttctt Run BLAST on NCBI transcript from alignment at sc0000012:464321..468247+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001783 ID=TCONS_00001783|Name=TCONS_00001783|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at sc0000012:464321..468247+ (Clytia hemisphaerica)
cttttttgattttatcaaacgcacaaaaacaacaaagcaGTCTTCTTGAA
TTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAGCTTAAGATTTGA
AGCAGTTGAAGTAACATGAAGGACTTTATTGTCAAGAATAACAGAATTTA
CTCCAAGCTaagtatattttattatttttttacaacttATATTGTTTTTT
TGGGATTAAAGAAAGTTATTAAAAAATGATAAGGAAGATTTAAGACAGAA
AAAAGGTACTatactgtttgaaatttttttatggcttTTGATGCATTTTT
TTTCAAGGACGATGTTGATATTATTTCATTGCTGTACATTATATGCTACA
TTGTATAGTAAAGAGAAAAGCAAGCTTGAAttacagattttgaaaataat
ttagatTTACTTTAGCTAGAGGATTCTGTTTTTATGTTGTGTTTGTTTGT
ATTCTCTTCATTTTGGTTTTACACATATTTTGATTTCGTCCATATTATag
taaaaatcttttgatgtaTGTAAATCTTTGAACAAATATTTCCACTTACA
GTATGGCAAatgcaaaaactaaatttgagtCGATTTGTTGATTAGAGATG
GATCATTATTTCTCCCTTAGATCTTTTTGAAACACTGTAATATCTGGCAT
ATGTGTAGTCATCAAGCATGCCAAACACATATCAGCATTAGCCATTCAAT
AGAGTGTCAAAATGTGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGAAGTTCTTTTGAATCAGATGTGCATGTTGT
TAGTCATTTTAATGCCAAAACAACATCAACAGTCAAAACATTCTAAACCA
TGTTTAAACTGTAGAAATTATGATTCAATTGGACtttcatctttttgttt
tgttttttgtaattacttTCAAAGCttcttaattttcttaaaaaaattgg
aaagcATAATGCTAAagtagtttcaaaaaaaaaagcctTGTGTACTGTAA
CTTCTGAAtaacatttttgtaaacaaaataatttcgtTTGAGATAAATTT
GTTCTGCAAAGTTTTTTTGTGCATGAAAGTTATCTGACGAGGTGTTGAGA
TTTTCTCTACTAGGCAAGTTAATTTTTTTTAGATAAATCTTTAATTATAA
GTGCAAGTTTATGCTAATCAGTAACCAGTCAGTTAGCCATGGGCAGATAT
ATTTTGGATTGCATTTTCCATTATTCTGTTTAGCCTGAATTTCTTGGTTG
TAAACTGTTTTTTGATCTTTCTTCTATTAACTCTGCCTAAATCCTTGTTG
TAAGGCCATGGCTAAAAAATCTGTAGCTTCACCCAACAATTGAATTAACA
CTTTTTGTTATTAATGCTAATAATTATaaagttttatatttattttttat
tttagcacTAAAGTGATGTTGCGTGTACATGGACATTGTTTGAATTTCAA
GGAAATTAACCCTAAACTAAGTAAGTCATTATTATGTCGCAATATGGTCT
TACTCAGTATCTTgactctcaaaattttattttacttccTCTCCAATGAA
GAAAGTGATCAGTAAAAGACTactataaaacaatagaaattctttCCCTG
TTGGTTTTTGATAGAAATGTTCATCCCCACTGTGAGAataagttccaccg
gggctgtgagacaggagtgttatcaataaaaacaaagcttgagaagtaaa
aagttaaaatacctGGACTTTTTCgtcagtgaaatatttttccctaaaat
ggctatcaaaaaaaattcgaatcaCCTCTAGATATGATTCTCAATAAGTT
TGCGCAGTCTTTAAATGTAACTTTTCAAATTGGTGGCCCTTCCCAAatgt
tttcatcaaaagttgcaaaagacacccctttctcactgCCCATTTGGAAC
TTTTgctttcagtggggataaaagcttttatcaaaatcccaatgggaata
gaaattatattgttccaaggttaaaagatccagtggggatggtttttgat
tgcaatttttaaacattgaatttagaATGGGGATGAAGTGTAAGTCAATT
TTTATAGTGGACTGGAATCTCAGGGTAATTTTCCATCAGGGACGAAGACA
AATTTCTTGCCAAATTTCCCAAAGGAGCTTTGACGGGGCTTTGACCTATT
ATTAGAACACATACCGTCTGGTCCCTCAAGTGTAAGGTTTTACTTATGAT
GTAAAGTACGATTTAGCTGGTGAAGAACTTAAGATGTCACTTAAACTATA
AGATTTTGTTTTTGTTCCTTTTTAGGAGTTACAAATCCTTTTGTCTGCAC
AAGTAAAACCAACTGGTTAGCCGAGGTAAGAATAAATATTTTTGAGTTAT
CTTCGATTACTTGCGTATAAGCCTATTATTCATTTCCCCATGTAATAACT
ATATTGAgaaattgacaatttttgattgttttttcattAGGCAAAAGGAT
CTAATATGGTTAAcactttttttcacttttcaaagatatttaacCATATG
AACACTTGAGCTGATTTGTAACTCTCGAATAGCGCTCTgcaacgcatacg
tcataattattacttttttttacatttgtacgagttgtaatgcggctcaa
ttaaagatacgtgcaagttcttatatatcttttgtcaaatgatgcaatta
atGTGCAAAAGAAACGCAAAAGGAGCTCCAATGCTCGTacaaaccacaga
tatctgtaaagcccgaacgGCTagaggcaactttaagctttctccagcaa
aaaaaagtgaagcaaaaatttgactttttaaatttcgtgccgatggatag
gatctagcattttaattgttttcggagcgcgagataaaaaaagtAGACGG
CAagcgctatttcacatctctcaaaccggtaaaattgcatattttagtca
cgtgactttggtaggaaatccttccaaacctaggcttcacttttcgataa
aagccgcaaatctagcccttcgNNNNNNNNNNNNNNCAAACACATCAAga
agagtaatgattatgtcaaaagtgTGCGCTATATAAACCTTGAAAGATGC
TTACCCTATTTCCCATTCAAGCTACCAAATTGACAGAATTTTGGAACTCc
ttctgaaaattttattttgtctttcagATATCACTTGGAACTTTGACGTA
AAGAAATTATTAAATGGTTGAACAAGACAACATTTTGGCTGGTGATGAAT
AAAGATTCGGATGCCGGCGACTCTAATATAAGCATAATGATCAAATAATT
GATAAATATATACTGtattgtgtcacagacccggtggtaCTTCTACATAC
TGTAAAAATCAGACAAATTGTACCCGGTTTAGAGAAAAACCCTGACTTTT
CACCCACCCGGTAATCTATAATGAAGGTTTATCTCTGAAGCTGTAAACAG
TACCCTttcaccttttttataagaaccaacgtttttttttaacccttggg
atgttcttaactttttttttcttttaaaagcctaagaatatttttatttt
catcttttagtgggtattttatccattttctgagaaattgggtctgaaat
gtTCTTACATTTTAACaaacgaagccttatgttcttataaagaaaacatg
TGGAATTACACAATCGTTTAAGACAAGCGATCTTTCATTCCTATCGTAAT
TTGTACCTTAATTTTATGTCTACtacagtacacttttttttataaaaacc
agtaaatttttgctgaggctcggctgttcttattttttttggcactttga
gccttgaattgttcttattttgttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001783-exon-sc0000012-1491911889:464321..464835 | TCONS_00001783-exon-sc0000012-1491911889:464321..464835 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1510915933:464321..464835 | TCONS_00001783-exon-sc0000012-1510915933:464321..464835 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1575043694:464321..464835 | TCONS_00001783-exon-sc0000012-1575043694:464321..464835 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1491911889:465876..465940 | TCONS_00001783-exon-sc0000012-1491911889:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1510915933:465876..465940 | TCONS_00001783-exon-sc0000012-1510915933:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1575043694:465876..465940 | TCONS_00001783-exon-sc0000012-1575043694:465876..465940 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1491911889:466746..466795 | TCONS_00001783-exon-sc0000012-1491911889:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1510915933:466746..466795 | TCONS_00001783-exon-sc0000012-1510915933:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1575043694:466746..466795 | TCONS_00001783-exon-sc0000012-1575043694:466746..466795 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1491911889:467598..468247 | TCONS_00001783-exon-sc0000012-1491911889:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1510915933:467598..468247 | TCONS_00001783-exon-sc0000012-1510915933:467598..468247 | Clytia hemisphaerica | exon |
| TCONS_00001783-exon-sc0000012-1575043694:467598..468247 | TCONS_00001783-exon-sc0000012-1575043694:467598..468247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:464321..468247 + |
Blast
The following BLAST results are available for this feature:
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