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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001850 ID=TCONS_00001850|Name=TCONS_00001850|organism=Clytia hemisphaerica|type=transcript|length=1338bp
AATATTTCAAGACAAGGAACACAGCTCTCTAATTTTCGTACAATCACGTA
GCTtacaacaatttttttaattggtaAATCGAATCAAGTTGTTAAAAAAG
TGCCTGTTAAATTAGAAGACGGAAGAAAATCCTTAATTGAAGGCAATCAA
ATTTAGAGGTTTAAAATTTATACGAAACACACGTTGATTAATTGGCAGCA
AAGGACAAAAAATGGAATATATAAATTATACAGCAGAGCATCTTTGGCCG
CCACAATATTATTTAGGAGCAGAACACAGCGCAATAACCCATGGCTATCC
TCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATTCACAC
GACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATTATCCC
GATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACAGAGGC
TAGAGTACAGGTATGGTTCCAAAATCGTCGTGCAAAGTTTCGTAAAACAA
GCGAGAAAAACAAACGGAAATCGAATTCTACGTCATCATCTtcatcaacc
aatcaaaatacagATCTTTCATCAACAGCCAATCAAATGGCAACTACAAA
CAATAACAACAATAGTACtataaataataacaataatggtgAAACAGTGA
TCGATAAACAATCGAATGAAGTCGATGAACAAATTCGATTGAAAAACGAT
TCAATCGAATCAACAGAAAAACAAATTCTCGATCATAACACACGATTACC
TGAAGACATAAACAATAAATATAACTCGACTGCTCCCCGGCTGACACACC
CACCGTACACCTTTCATACTTATCAAGGCACGTACTGTCCTTCATCATAT
GGCTCTATGGAGCCGCGCGTCGTAAATGGAGTCTCATACCCTGTATCTGT
TGAAGGTGTCAAGGGTGAAAGCTATGGCCGTAACACTCTAGTAAATAATG
GTGATTTAGACTGGCGGGCTTAGGAGCTACTAAAAATGCTTATATTTCTA
GTTTTTTTGCTATGTAAAtatcttaaaaagaaaattttatgaagaCGTGA
TATAACATAGAAAGCATTATTTCCTATTTATATCTTTATTAtggtttttg
aaaactttaatcGACACTTTAAATTGTTGAGGGTGTACCGtaaaattttg
tatattttagATGTATGTTTTAGAGGGATCATTTTTATCGGTTTTTATTA
TATTCCAAGTTAtctttttaccaaaaatataTACTATTTGATTTTTAGAA
CGTGTTGAGtaaaatttttatatgattGATTAATAATTTCTTGATATTCA
TAATGTAATCTTTAATTGACAAATCGTTTCAAAATATA Run BLAST on NCBI transcript from alignment at sc0000012:944748..947157+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001850 ID=TCONS_00001850|Name=TCONS_00001850|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0000012:944748..947157+ (Clytia hemisphaerica)
AATATTTCAAGACAAGGAACACAGCTCTCTAATTTTCGTACAATCACGTA
GCTtacaacaatttttttaattggtaAATCGAATCAAGTTGTTAAAAAAG
TGCCTGTTAAATTAGAAGACGGAAGAAAATCCTTAATTGAAGGCAATCAA
ATTTAGAGGTTTAAAATTTATACGAAACACACGTTGATTAATTGGCAGCA
AAGGACAAAAAATGGAATATATAAATTATACAGCAGAGCATCTTTGGCCG
CCACAATATTATTTAGGTAATAGATATTGACAAGTTTCAGAGTTTTGTCA
TTTGCTGGTTAATGACATAGATCCGATGTTGAGATAAGATCCTTTATAAG
GAATAGAGCGACAATATGTCTTATGTATTTTTGCGGTAGCGCGCTTTGCA
ATGTTATCAGGTGAAAAATACGTATACACACATTCTTAATGACAGATATG
ATGTTGTACAGTGACCTTTTTTGATAGTAACGAAATTCGTAAAAAAAGGG
AACCGAGACGGGAGGGTGAGATAAACATCTCTGTGAACTGGTATTTGCGG
TAGAAATGTTCTCAGCAAGACTGAGTCAATATTTGGTGATTTACCGGTCA
CGTTTCTCACGTTTTGCACAGATCCTTTTTTAACGCCGCGATTTAACGTT
AGAAATACGTCATATTGACATTTCATAACCAACAAGATAATTTCGGGAAA
GTTATCAAATTAGCCCGAAATTCTATTTTGACAATCGAAGTCTTAACATT
CTGTTCTAGTTCTGTCGGATTTTTTTATTGATACCAAAGTCTATTTACAA
AAGATTCAATTTTCCAGGAGCAGAACACAGCGCAATAACCCATGGCTATC
CTCCACCATACGCACGCCGAGGTCATCGAAGGAATCGAACCACATTCACA
CGACAACAACTCGAAGAACTCGAAAAATTATTCGATAGCACGCATTATCC
CGATGTTTTCGCGAGAGAAGAGTTAGCATCAAGGATCAGTTTAACAGAGG
CTAGAGTACAGGTAAGTTCTCATTtttaacctttaaaaaaatgcagTGCT
CAAAACTAGCTTTTATTCTTTGAACGAAATTcataaaataaatttgacaa
gattcttaaaatgtttctttagCAAAATTGAATACTGAATATTGACCAAG
CAAATATCCTTAAGTATCTAAAGGCAAGCAAGTCTGCTTAAACATCTTTT
GAAGACGGTTTGAATCTCCTTATAACTTTACTCATAGTTTACCGGTCATA
ATTGAATACCCACCTAATATTCccgcaattttcatattctgTTGCGCTCG
ATTCTTCCTGTTCTTAACAATCTTGTTGTTCCCAAAAAAGGGAAATGAGT
TTTTCTCGTTAGTACGACGTTAGTACGAAATTTTTGCATGACAAAGAAGG
GTATTTTATAAGTAAAAACGATTCATAGAATAACTGAACGCATTCGAATA
ACAATCGAAATACTCAAATATTAGCTATAATTTTTTCCTTCGtctatttt
ttcactttttatgtGTCCTTGTTTTTCCATAGGTATGGTTCCAAAATCGT
CGTGCAAAGTTTCGTAAAACAAGCGAGAAAAACAAACGGAAATCGAATTC
TACGTCATCATCTtcatcaaccaatcaaaatacagATCTTTCATCAACAG
CCAATCAAATGGCAACTACAAACAATAACAACAATAGTACtataaataat
aacaataatggtgAAACAGTGATCGATAAACAATCGAATGAAGTCGATGA
ACAAATTCGATTGAAAAACGATTCAATCGAATCAACAGAAAAACAAATTC
TCGATCATAACACACGATTACCTGAAGACATAAACAATAAATATAACTCG
ACTGCTCCCCGGCTGACACACCCACCGTACACCTTTCATACTTATCAAGG
CACGTACTGTCCTTCATCATATGGCTCTATGGAGCCGCGCGTCGTAAATG
GAGTCTCATACCCTGTATCTGTTGAAGGTGTCAAGGGTGAAAGCTATGGC
CGTAACACTCTAGTAAATAATGGTGATTTAGACTGGCGGGCTTAGGAGCT
ACTAAAAATGCTTATATTTCTAGTTTTTTTGCTATGTAAAtatcttaaaa
agaaaattttatgaagaCGTGATATAACATAGAAAGCATTATTTCCTATT
TATATCTTTATTAtggtttttgaaaactttaatcGACACTTTAAATTGTT
GAGGGTGTACCGtaaaattttgtatattttagATGTATGTTTTAGAGGGA
TCATTTTTATCGGTTTTTATTATATTCCAAGTTAtctttttaccaaaaat
ataTACTATTTGATTTTTAGAACGTGTTGAGtaaaatttttatatgattG
ATTAATAATTTCTTGATATTCATAATGTAATCTTTAATTGACAAATCGTT
TCAAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001850-exon-sc0000012-1491911889:944748..945013 | TCONS_00001850-exon-sc0000012-1491911889:944748..945013 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1510915933:944748..945013 | TCONS_00001850-exon-sc0000012-1510915933:944748..945013 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1575043694:944748..945013 | TCONS_00001850-exon-sc0000012-1575043694:944748..945013 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1491911889:945565..945758 | TCONS_00001850-exon-sc0000012-1491911889:945565..945758 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1510915933:945565..945758 | TCONS_00001850-exon-sc0000012-1510915933:945565..945758 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1575043694:945565..945758 | TCONS_00001850-exon-sc0000012-1575043694:945565..945758 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1491911889:946280..947157 | TCONS_00001850-exon-sc0000012-1491911889:946280..947157 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1510915933:946280..947157 | TCONS_00001850-exon-sc0000012-1510915933:946280..947157 | Clytia hemisphaerica | exon |
| TCONS_00001850-exon-sc0000012-1575043694:946280..947157 | TCONS_00001850-exon-sc0000012-1575043694:946280..947157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:944748..947157 + |
Blast
BLAST of TCONS_00001850 vs. Swiss-Prot (Human)
Match: DRGX (Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.424e-24 Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 2
Query: 308 YARRGHRRNRTTFTRQQLEELEKLFDSTHYPDVFAREELASRISLTEARVQVWFQNRRAKFR 493
+ RR RRNRTTFT QQLE LE +F THYPDVF REELA +I+LTEARVQVWFQNRRAK+R
Sbjct: 28 FLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 89
The following BLAST results are available for this feature:
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