TCONS_00003363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003363
Unique NameTCONS_00003363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003363 ID=TCONS_00003363|Name=TCONS_00003363|organism=Clytia hemisphaerica|type=transcript|length=518bp
TACTGGTCCCATCCAACTTGTCGACATCCAGGATTGTCCTTATAGTGCTA
TGGATTTGGACGAGCGTAAGAAATTCCGTAGAAATCCACATAAAGGTCCC
ATCAAAGTATCGATATTTCAATCGATGGGCACACTGTCTTTCAATAACTT
TGAAAATGCTATCAGAGCCAAACAAGATAGCCCAACCTTGATCACTTATA
TGGATAATTTCTTTCATCGTACAAAAACATGGGATCAACATGGTATGCGG
TGGGAAAGCGTTTTTCAAGCTAGAAGCACAGGCGAATATAAATTCTACTT
GATGGCTAACGATTTTGCAAAACTTTACATGGGCAAAGATGAGACAGAAA
CGTCGAAAAATTATTGTACAGGCTCCACTGGGAATAGTGGCCTAAATGAt
GAGTTTTCATGCACACGTTATTTGGTGAAAGGAGCGAAATATTACATCGA
GTTATTAACGTATGACGACAATCTTTATGATTGGCAATATTTGAAAGTAG
ACAAACCAAACTTTGAGG
Run BLAST on NCBI

transcript from alignment at sc0000026:974426..976735-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003363 ID=TCONS_00003363|Name=TCONS_00003363|organism=Clytia hemisphaerica|type=transcript|length=2310bp|location=Sequence derived from alignment at sc0000026:974426..976735- (Clytia hemisphaerica)
TACTGGTCCCATCCAACTTGTCGACATCCAGGATTGTCCTTATAGTGCTA
TGGATTTGGACGAGCGTAAGAAATTCCGTAGAAATCCACGTAAGCGAAGC
TTAGTTCGTAACTTTTTCTGGATCAATATTTAACGTGGATAGCTTAGTAA
TCTATCACTTTCAGCTTTTAGATAGTCTTTCGTTTGTTTTGACGGGGTCC
ACGGCCATCCGGTTCGGGTTCAATTATCTATGAACAAGACGGAACGTTTG
AAGGAGCGACGCTGACGTCTTGCCCATTCGGTCATCGCTCTAACTTAACT
ACTCTTGGTAACGAAATCATAATTATTCTCTCTCATTCCCTTTCTTACTA
ATGCTCATGGTTATACTTAAATTATAGTATACGGATCGATCCACAACTTG
GCGGCTCTTGTTTATTTCTAGCTAAGCCTCAAACTCCTGCTAAAATCGAA
TTTTATTAGGAAGCTACTATACGACGCTAAATACCTAAGAATTGTATCTA
AGAACAGCCACGAAATATCTTCGATATCTTCTTATGCAATTTAACATTTA
ATTTAATGAGAACCGACCTTTTTTTAGGTGGGTTCTTGGAGTGGGGCGTA
CACCAATGCGTGGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATAT
GGTCCTCACAAGTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGATT
TTGGTAAGATATAATTCCTCTAATTAGGCTGGACTTAAAAAAATGTTGGT
TTGCCGTCAGCCGACCGACTCTTCTCTAAACTTTGCCGACCCAGAAACTT
TTATTGCTAAAAAATGTAGACAAAAATTCCATGAATGACCAGAATAAAAA
AAATTTCCGAGCGACAAACCCACCTCCAAAATCTAGGGTTGGGTGACGGC
AAACCAAGAAATTTATAAGTCCATTTTTCTAAGACATTACTTTAATGGAA
AGGTATTGTTTCATTCCATTTTTAACCCTAATTTATTGATCAGCCTGCGT
TGGAAAAGAGAATCAACCTTATTGAAAAAAAAGTCTTTCCATCAAAATTT
TCTTGTAAATCTTCGTTTAGATAAAGGTCCCATCAAAGTATCGATATTTC
AATCGATGGGCACACTGTCTTTCAATAACTTTGAAAATGCTATCAGAGCC
AAACAAGATAGCCCAACCTTGATCACTTATATGGATAATTTCTTTCATCG
TACAAAAACATGGGATCAACATGGTATGCGGTGGGAAAGCGTTTTTCAAG
CTAGAAGCACAGGCGAATATAAATTCTACTTGATGGCTAACGATTTTGCA
AAACTTTACATGGGCAAAGATGAGACAGAAACGTCGAAAAATTATTGTAC
AGGCTCCACTGGGAATAGTGGCCTAAATGAGTAAGTTTGTTATAAAGTTT
TGTGAGCTCAGAAATTCTTGGTTTATATAACTGATCACCATAAAAATATA
GTCCAAGTTTATATAATATAAAGATGTGTTTCAGAGTAGGCTCGTAGGCT
AACTCTCGTCTGCTCATTAGTCTTGAGTATAATTCTGATCACTGCAACAG
AAGCATTTTCGGTTAACTAGCTAGCGTACCCAGTAAATTTATTTCAGAAT
TCACCACCCGGATTCTCATTCCAGCCACGCCACTTATTTCAATCCTCCGA
CTACGAGATACCCGTAGAGATACAGTAAAATAACAAAAAACATCCGATCA
AATTCAAGGAAACTTCATAATAAATAAAAGAGGCATGAAATTCGGGCAAA
ACTAAGAACATATTAAAAGCACCTAGCCTGGAAAATTACTCAAGAAATTA
AGATGATTACGAATAATTTAGCGTAAGATAAAGGCTGAGCCTAGCCTAGC
CTAGCCTAGCCTTTACACATTTTTCGATGATTTAGTACTAAAAATTGGCT
TTGGTTAGACACATAACGTCTCTAGCCTGAGCTATCAAAAGCAATGAAGA
TGAAGCAGGATGAAGTGCTTTTTAATGATCCCTTTATCCAAATTTTTCCT
TCAAATAATAGGATTTTTCATGTCTTGTTAGGTTACGTAATTTCCACCAT
TAAAGAAGCAAATGTTCGAATCTGTAGGGACAATTCCCTACACAATCGAA
CGTTTGCTTCTTTAATGGTGGAAATTACGTAACATAACAAAATGTGACAA
ACCTCTAAAGTATTCGTTTTTAAATCTTTCTTTTAATTTAGTGAGTTTTC
ATGCACACGTTATTTGGTGAAAGGAGCGAAATATTACATCGAGTTATTAA
CGTATGACGACAATCTTTATGATTGGCAATATTTGAAAGTAGACAAACCA
AACTTTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001859XLOC_001859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003363-exon-sc0000026-1575043694:976647..976735TCONS_00003363-exon-sc0000026-1575043694:976647..976735Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1575043694:975356..975665TCONS_00003363-exon-sc0000026-1575043694:975356..975665Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1575043694:974426..974544TCONS_00003363-exon-sc0000026-1575043694:974426..974544Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1510915933:976647..976735TCONS_00003363-exon-sc0000026-1510915933:976647..976735Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1510915933:975356..975665TCONS_00003363-exon-sc0000026-1510915933:975356..975665Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1510915933:974426..974544TCONS_00003363-exon-sc0000026-1510915933:974426..974544Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1491911889:976647..976735TCONS_00003363-exon-sc0000026-1491911889:976647..976735Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1491911889:975356..975665TCONS_00003363-exon-sc0000026-1491911889:975356..975665Clytia hemisphaericaexon
TCONS_00003363-exon-sc0000026-1491911889:974426..974544TCONS_00003363-exon-sc0000026-1491911889:974426..974544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:974426..976735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.126028	0.390388	1.96565	0	0	1.12966	0.0292159	0	0	0.505677	0.00818735	0.00878628	0.021648	0.552246	0	0	0	0	0	0.544999	0	0	0.246036	0.262576	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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