TCONS_00003364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003364
Unique NameTCONS_00003364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003364 ID=TCONS_00003364|Name=TCONS_00003364|organism=Clytia hemisphaerica|type=transcript|length=733bp
GGTCGGACAATTCACTATGATCACGGTTAATTTTCAGGTGTCATTACGCA
TGTTTGCAGTGGAAAGATACTCTGCCCTTCATCTGACACTACTGGTCCCA
TCCAACTTGTCGACATCCAGGATTGTCCTTATAGTGCTATGGATTTGGAC
GAGCGTAAGAAATTCCGTAGAAATCCACGTGGGTTCTTGGAGTGGGGCGT
ACACCAATGCGTGGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATA
TGGTCCTCACAAGTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGAT
TTTGATAAAGGTCCCATCAAAGTATCGATATTTCAATCGATGGGCACACT
GTCTTTCAATAACTTTGAAAATGCTATCAGAGCCAAACAAGATAGCCCAA
CCTTGATCACTTATATGGATAATTTCTTTCATCGTACAAAAACATGGGAT
CAACATGGTATGCGGTGGGAAAGCGTTTTTCAAGCTAGAAGCACAGGCGA
ATATAAATTCTACTTGATGGCTAACGATTTTGCAAAACTTTACATGGGCA
AAGATGAGACAGAAACGTCGAAAAATTATTGTACAGGCTCCACTGGGAAT
AGTGGCCTAAATGAtGAGTTTTCATGCACACGTTATTTGGTGAAAGGAGC
GAAATATTACATCGAGTTATTAACGTATGACGACAATCTTTATGATTGGC
AATATTTGAAAGTAGACAAACCAAACTTTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00003364-protein

>TCONS_00003364-protein ID=TCONS_00003364-protein|Name=TCONS_00003364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MDLDERKKFRRNPRGFLEWGVHQCVGPYGGNIAPEWYMVLTSSCTARAAQ
IVFDFDKGPIKVSIFQSMGTLSFNNFENAIRAKQDSPTLITYMDNFFHRT
KTWDQHGMRWESVFQARSTGEYKFYLMANDFAKLYMGKDETETSKNYCTG
STGNSGLNDEFSCTRYLVKGAKYYIELLTYDDNLYDWQYLKVDKPNFE
Run BLAST on NCBI

transcript from alignment at sc0000026:974426..976824-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003364 ID=TCONS_00003364|Name=TCONS_00003364|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at sc0000026:974426..976824- (Clytia hemisphaerica)
GGTCGGACAATTCACTATGATCACGGTTAATTTTCAGGTGTCATTACGCA
TGTTTGCAGTGGAAAGATACTCTGCCCTTCATCTGACACTACTGGTCCCA
TCCAACTTGTCGACATCCAGGATTGTCCTTATAGTGCTATGGATTTGGAC
GAGCGTAAGAAATTCCGTAGAAATCCACGTAAGCGAAGCTTAGTTCGTAA
CTTTTTCTGGATCAATATTTAACGTGGATAGCTTAGTAATCTATCACTTT
CAGCTTTTAGATAGTCTTTCGTTTGTTTTGACGGGGTCCACGGCCATCCG
GTTCGGGTTCAATTATCTATGAACAAGACGGAACGTTTGAAGGAGCGACG
CTGACGTCTTGCCCATTCGGTCATCGCTCTAACTTAACTACTCTTGGTAA
CGAAATCATAATTATTCTCTCTCATTCCCTTTCTTACTAATGCTCATGGT
TATACTTAAATTATAGTATACGGATCGATCCACAACTTGGCGGCTCTTGT
TTATTTCTAGCTAAGCCTCAAACTCCTGCTAAAATCGAATTTTATTAGGA
AGCTACTATACGACGCTAAATACCTAAGAATTGTATCTAAGAACAGCCAC
GAAATATCTTCGATATCTTCTTATGCAATTTAACATTTAATTTAATGAGA
ACCGACCTTTTTTTAGGTGGGTTCTTGGAGTGGGGCGTACACCAATGCGT
GGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATATGGTCCTCACAA
GTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGATTTTGGTAAGATA
TAATTCCTCTAATTAGGCTGGACTTAAAAAAATGTTGGTTTGCCGTCAGC
CGACCGACTCTTCTCTAAACTTTGCCGACCCAGAAACTTTTATTGCTAAA
AAATGTAGACAAAAATTCCATGAATGACCAGAATAAAAAAAATTTCCGAG
CGACAAACCCACCTCCAAAATCTAGGGTTGGGTGACGGCAAACCAAGAAA
TTTATAAGTCCATTTTTCTAAGACATTACTTTAATGGAAAGGTATTGTTT
CATTCCATTTTTAACCCTAATTTATTGATCAGCCTGCGTTGGAAAAGAGA
ATCAACCTTATTGAAAAAAAAGTCTTTCCATCAAAATTTTCTTGTAAATC
TTCGTTTAGATAAAGGTCCCATCAAAGTATCGATATTTCAATCGATGGGC
ACACTGTCTTTCAATAACTTTGAAAATGCTATCAGAGCCAAACAAGATAG
CCCAACCTTGATCACTTATATGGATAATTTCTTTCATCGTACAAAAACAT
GGGATCAACATGGTATGCGGTGGGAAAGCGTTTTTCAAGCTAGAAGCACA
GGCGAATATAAATTCTACTTGATGGCTAACGATTTTGCAAAACTTTACAT
GGGCAAAGATGAGACAGAAACGTCGAAAAATTATTGTACAGGCTCCACTG
GGAATAGTGGCCTAAATGAGTAAGTTTGTTATAAAGTTTTGTGAGCTCAG
AAATTCTTGGTTTATATAACTGATCACCATAAAAATATAGTCCAAGTTTA
TATAATATAAAGATGTGTTTCAGAGTAGGCTCGTAGGCTAACTCTCGTCT
GCTCATTAGTCTTGAGTATAATTCTGATCACTGCAACAGAAGCATTTTCG
GTTAACTAGCTAGCGTACCCAGTAAATTTATTTCAGAATTCACCACCCGG
ATTCTCATTCCAGCCACGCCACTTATTTCAATCCTCCGACTACGAGATAC
CCGTAGAGATACAGTAAAATAACAAAAAACATCCGATCAAATTCAAGGAA
ACTTCATAATAAATAAAAGAGGCATGAAATTCGGGCAAAACTAAGAACAT
ATTAAAAGCACCTAGCCTGGAAAATTACTCAAGAAATTAAGATGATTACG
AATAATTTAGCGTAAGATAAAGGCTGAGCCTAGCCTAGCCTAGCCTAGCC
TTTACACATTTTTCGATGATTTAGTACTAAAAATTGGCTTTGGTTAGACA
CATAACGTCTCTAGCCTGAGCTATCAAAAGCAATGAAGATGAAGCAGGAT
GAAGTGCTTTTTAATGATCCCTTTATCCAAATTTTTCCTTCAAATAATAG
GATTTTTCATGTCTTGTTAGGTTACGTAATTTCCACCATTAAAGAAGCAA
ATGTTCGAATCTGTAGGGACAATTCCCTACACAATCGAACGTTTGCTTCT
TTAATGGTGGAAATTACGTAACATAACAAAATGTGACAAACCTCTAAAGT
ATTCGTTTTTAAATCTTTCTTTTAATTTAGTGAGTTTTCATGCACACGTT
ATTTGGTGAAAGGAGCGAAATATTACATCGAGTTATTAACGTATGACGAC
AATCTTTATGATTGGCAATATTTGAAAGTAGACAAACCAAACTTTGAGG

Coding sequence (CDS) from alignment at sc0000026:974426..976824-

>TCONS_00003364 ID=TCONS_00003364|Name=TCONS_00003364|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000026:974426..976824- (Clytia hemisphaerica)
TGAGTTTTCATGCACACGTTATTTGGTGAAAGGAGCGAAATATTACATCG
AGTTATTAACGTATGACGACAATCTTTATGATTGGCAATATTTGAAAGTA
GACAAACCAAACTTTGAGATAAAGGTCCCATCAAAGTATCGATATTTCAA
TCGATGGGCACACTGTCTTTCAATAACTTTGAAAATGCTATCAGAGCCAA
ACAAGATAGCCCAACCTTGATCACTTATATGGATAATTTCTTTCATCGTA
CAAAAACATGGGATCAACATGGTATGCGGTGGGAAAGCGTTTTTCAAGCT
AGAAGCACAGGCGAATATAAATTCTACTTGATGGCTAACGATTTTGCAAA
ACTTTACATGGGCAAAGATGAGACAGAAACGTCGAAAAATTATTGTACAG
GCTCCACTGGGAATAGTGGCCTAAATGAGTGGGTTCTTGGAGTGGGGCGT
ACACCAATGCGTGGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATA
TGGTCCTCACAAGTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGAT
TTTGATGGATTTGGACGAGCGTAAGAAATTCCGTAGAAATCCACTGAGTT
TTCATGCACACGTTATTTGGTGAAAGGAGCGAAATATTACATCGAGTTAT
TAACGTATGACGACAATCTTTATGATTGGCAATATTTGAAAGTAGACAAA
CCAAACTTTGAGATAAAGGTCCCATCAAAGTATCGATATTTCAATCGATG
GGCACACTGTCTTTCAATAACTTTGAAAATGCTATCAGAGCCAAACAAGA
TAGCCCAACCTTGATCACTTATATGGATAATTTCTTTCATCGTACAAAAA
CATGGGATCAACATGGTATGCGGTGGGAAAGCGTTTTTCAAGCTAGAAGC
ACAGGCGAATATAAATTCTACTTGATGGCTAACGATTTTGCAAAACTTTA
CATGGGCAAAGATGAGACAGAAACGTCGAAAAATTATTGTACAGGCTCCA
CTGGGAATAGTGGCCTAAATGAGTGGGTTCTTGGAGTGGGGCGTACACCA
ATGCGTGGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATATGGTCC
TCACAAGTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGATTTTGAT
GGATTTGGACGAGCGTAAGAAATTCCGTAGAAATCCACTGAGTTTTCATG
CACACGTTATTTGGTGAAAGGAGCGAAATATTACATCGAGTTATTAACGT
ATGACGACAATCTTTATGATTGGCAATATTTGAAAGTAGACAAACCAAAC
TTTGAGATAAAGGTCCCATCAAAGTATCGATATTTCAATCGATGGGCACA
CTGTCTTTCAATAACTTTGAAAATGCTATCAGAGCCAAACAAGATAGCCC
AACCTTGATCACTTATATGGATAATTTCTTTCATCGTACAAAAACATGGG
ATCAACATGGTATGCGGTGGGAAAGCGTTTTTCAAGCTAGAAGCACAGGC
GAATATAAATTCTACTTGATGGCTAACGATTTTGCAAAACTTTACATGGG
CAAAGATGAGACAGAAACGTCGAAAAATTATTGTACAGGCTCCACTGGGA
ATAGTGGCCTAAATGAGTGGGTTCTTGGAGTGGGGCGTACACCAATGCGT
GGGGCCGTACGGAGGAAATATTGCTCCTGAATGGTATATGGTCCTCACAA
GTTCGTGCACAGCAAGAGCGGCGCAAATTGTCTTCGATTTTGATGGATTT
GGACGAGCGTAAGAAATTCCGTAGAAATCCACTGAGTTTTCATGCACACG
TTATTTGGTGAAAGGAGCGAAATATTACATCGAGTTATTAACGTATGACG
ACAATCTTTATGATTGGCAATATTTGAAAGTAGACAAACCAAACTTTGAG
ATAAAGGTCCCATCAAAGTATCGATATTTCAATCGATGGGCACACTGTCT
TTCAATAACTTTGAAAATGCTATCAGAGCCAAACAAGATAGCCCAACCTT
GATCACTTATATGGATAATTTCTTTCATCGTACAAAAACATGGGATCAAC
ATGGTATGCGGTGGGAAAGCGTTTTTCAAGCTAGAAGCACAGGCGAATAT
AAATTCTACTTGATGGCTAACGATTTTGCAAAACTTTACATGGGCAAAGA
TGAGACAGAAACGTCGAAAAATTATTGTACAGGCTCCACTGGGAATAGTG
GCCTAAATGAGTGGGTTCTTGGAGTGGGGCGTACACCAATGCGTGGGGCC
GTACGGAGGAAATATTGCTCCTGAATGGTATATGGTCCTCACAAGTTCGT
GCACAGCAAGAGCGGCGCAAATTGTCTTCGATTTTGATGGATTTGGACGA
GCGTAAGAAATTCCGTAGAAATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001859XLOC_001859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003364-exon-sc0000026-1575043694:976647..976824TCONS_00003364-exon-sc0000026-1575043694:976647..976824Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1575043694:976033..976158TCONS_00003364-exon-sc0000026-1575043694:976033..976158Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1575043694:975356..975665TCONS_00003364-exon-sc0000026-1575043694:975356..975665Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1575043694:974426..974544TCONS_00003364-exon-sc0000026-1575043694:974426..974544Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1510915933:976647..976824TCONS_00003364-exon-sc0000026-1510915933:976647..976824Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1510915933:976033..976158TCONS_00003364-exon-sc0000026-1510915933:976033..976158Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1510915933:975356..975665TCONS_00003364-exon-sc0000026-1510915933:975356..975665Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1510915933:974426..974544TCONS_00003364-exon-sc0000026-1510915933:974426..974544Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1491911889:976647..976824TCONS_00003364-exon-sc0000026-1491911889:976647..976824Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1491911889:976033..976158TCONS_00003364-exon-sc0000026-1491911889:976033..976158Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1491911889:975356..975665TCONS_00003364-exon-sc0000026-1491911889:975356..975665Clytia hemisphaericaexon
TCONS_00003364-exon-sc0000026-1491911889:974426..974544TCONS_00003364-exon-sc0000026-1491911889:974426..974544Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003364-proteinTCONS_00003364-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:974426..976824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6765	12.4124	10.8857	8.47496	1.11264	1.9343	2.75795	3.09668	1.3693	0.747263	0.66872	0.811648	1.03566	0.683826	0.187399	0.201108	0.495498	0.507869	0.719726	1.28034	0.327308	0.287369	6.67617	7.58323	2.39885	5.12523	0.226265	0.241476	2.32959	2.90943
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011658PA14_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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