TCONS_00003370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003370
Unique NameTCONS_00003370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003370 ID=TCONS_00003370|Name=TCONS_00003370|organism=Clytia hemisphaerica|type=transcript|length=708bp
CTCGATGGTTTTTCACTCCTAAGGACCTAACGAACACATTTCAATCAAAG
AATTTCACGTGTACGCAAATTTTGGGTTCCCTAAATTAAGCCTGAAATTC
CCCTGGACCATTCNCAAGTTTGGAAAAGTCAATTTCCGACCCCAAAGACA
TTTTCTTTGGTCTGATTTGGGATTTCTCGAATCCTGGGAATGTTTTATTC
TTTGCTCTGCTTTGCTATgacaaatttttgaatttagtCTTTGCaatgta
aaaattgttttcacaagtttcaaaaataaGCTTGTTAAATTCCATTTCAC
AAGGTTAAGTTATGTGGTTACCATAGATTGGGATATTGAAAATAACGATA
CAAAATAACATGGATTCACTCTAATTAGACACCCGATTCGGAAAAATTAA
TTTCTGTATCTCTCCTATAGCCTAATTTGGGATTTTGTGAATCCCGAATG
TTTTATGATCTAATATTATATCTAACttttacaatgaaaaaaaatataca
tatatgtacaatgacaaaaatgataaaaatgaagaaataactTAGTAAAT
GCAATTACTAGAGTTTGAACTCGTGCAAAATTCTAAATCCATAAAAAAAA
GAGTAATTACTTTCAAAAAACATCCATAAANaaaacggctaaaatcgatt
tttgtcaaaaaacaccaaagaaggagagcaaaaagccaaataattgtttt
ttgacaGC
Run BLAST on NCBI

transcript from alignment at sc0000026:116680..117387

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003370 ID=TCONS_00003370|Name=TCONS_00003370|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0000026:116680..117387 (Clytia hemisphaerica)
GCtgtcaaaaaacaattatttggctttttgctctccttctttggtgtttt
ttgacaaaaatcgattttagccgttttNTTTATGGATGTTTTTTGAAAGT
AATTACTCTTTTTTTTATGGATTTAGAATTTTGCACGAGTTCAAACTCTA
GTAATTGCATTTACTAagttatttcttcatttttatcatttttgtcattg
tacatatatgtatattttttttcattgtaaaaGTTAGATATAATATTAGA
TCATAAAACATTCGGGATTCACAAAATCCCAAATTAGGCTATAGGAGAGA
TACAGAAATTAATTTTTCCGAATCGGGTGTCTAATTAGAGTGAATCCATG
TTATTTTGTATCGTTATTTTCAATATCCCAATCTATGGTAACCACATAAC
TTAACCTTGTGAAATGGAATTTAACAAGCttatttttgaaacttgtgaaa
acaatttttacattGCAAAGactaaattcaaaaatttgtcATAGCAAAGC
AGAGCAAAGAATAAAACATTCCCAGGATTCGAGAAATCCCAAATCAGACC
AAAGAAAATGTCTTTGGGGTCGGAAATTGACTTTTCCAAACTTGNGAATG
GTCCAGGGGAATTTCAGGCTTAATTTAGGGAACCCAAAATTTGCGTACAC
GTGAAATTCTTTGATTGAAATGTGTTCGTTAGGTCCTTAGGAGTGAAAAA
CCATCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001865XLOC_001865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003370-exon-sc0000026-1491911889:116680..117387TCONS_00003370-exon-sc0000026-1491911889:116680..117387Clytia hemisphaericaexon
TCONS_00003370-exon-sc0000026-1510915933:116680..117387TCONS_00003370-exon-sc0000026-1510915933:116680..117387Clytia hemisphaericaexon
TCONS_00003370-exon-sc0000026-1575043694:116680..117387TCONS_00003370-exon-sc0000026-1575043694:116680..117387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:116680..117387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188085	0.321924	0.114785	0	2.00394	1.82231	2.29132	2.41661	2.24821	1.56394	1.32969	1.06125	0.224499	0.262437	0.164264	0.249417	0.165161	0.112543	0	0.396887	0.706795	0	0	0.294276	0.0797596	0.413969	0.322135	0.382632	0.133285	0.303812
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top