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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003505 ID=TCONS_00003505|Name=TCONS_00003505|organism=Clytia hemisphaerica|type=transcript|length=3055bpRun BLAST on NCBI protein sequence of TCONS_00003505-protein >TCONS_00003505-protein ID=TCONS_00003505-protein|Name=TCONS_00003505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MDINIIKKLKVVELKAALGERGLSTKGKKDDLVKRLVEAMEADEEPQQEVRun BLAST on NCBI transcript from alignment at sc0000028:749993..767348- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003505 ID=TCONS_00003505|Name=TCONS_00003505|organism=Clytia hemisphaerica|type=transcript|length=17356bp|location=Sequence derived from alignment at sc0000028:749993..767348- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000028:749993..767348- >TCONS_00003505 ID=TCONS_00003505|Name=TCONS_00003505|organism=Clytia hemisphaerica|type=CDS|length=24450bp|location=Sequence derived from alignment at sc0000028:749993..767348- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003505 vs. Swiss-Prot (Human)
Match: HNRL1 (Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2) HSP 1 Score: 278.87 bits (712), Expect = 3.204e-79 Identity = 155/394 (39.34%), Postives = 236/394 (59.90%), Query Frame = 1
Query: 925 VGLDQYSSDINLVISNNGLAASPLSKNGFSYLWAGARANRGVKGGKIGYEVKITGKKEV-DLPETEILHHAIRIGWSAEHSGMQLXXXXXXXXXXXTGKVCASSSFYTYGVTFGEGDVIGTYLDLES-EPKSLKYTKNGEDLGVAMSLTIN-LDEKPLFPHILVRNMSVELNFGDNETPFNETPEGFTLLQNGSEEQTVKMTSTRLAEDEMPEVIMMVGLPSSGKTVWVKKYVDSNTDKLYNIVSVQGLLDRCKLEGKSRRKDDKG-FQELMTAAIKVLTKLYQLCPKRKRNYIYDQSNVYHKAQIAKMEPFNEFKRKAVIIVPTHDNLRRRTSDAKRKNEIIHEVPFGDLCDMKCRFNIPEKGELFDDVSFPELDEKNATKTVHDYHSDGQRA 2094
V +D Y+ D++ ++ + + PL+ GF+YLW+GARA+ GV+ G++ +E+KI + V LP TE H +RIGWS + QLGE SYGY TGK +S F YG F E DVIG + D E L +TKNG+ +G+A + L + L+PH+LV+N +VE NFG P+ GFT +Q+ + ++ T ++ E E++MMVGLP++GKT W K+ SN K YNI+ ++D+ ++ G R+++ G + L+ A + L +L Q+ ++KRNYI DQ+NVY AQ KM PF F+RKA++I PT ++L+ RT KR +E +VP + +MK F +P+ G+ D+V F EL + A K V Y+ +G++A
Sbjct: 211 VAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAEC-EILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKDRT--IKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQYNEEGRKA 601 The following BLAST results are available for this feature:
BLAST of TCONS_00003505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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