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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003518 ID=TCONS_00003518|Name=TCONS_00003518|organism=Clytia hemisphaerica|type=transcript|length=1287bp
GGTTTCAGAAGTTATTTTACAAGAGACATCTGAAGATGTTATGCAATTCA
TGACATGAGTAAGTGGCGATAGTGACGCGTGACACGATTTTTCGTACAAT
GTCATAAAAAATGATttctaaacaataaaaaataaaacttttcaattgct
gtttttataaaaatgggtCATCCTGAAATAAAAATAGTTCCCACGAGTCA
CACCCTTTCCCTGGATATTAACCGAAATTTTATAGAATTCCTggatattt
tcgaaatttcctaAGACAATGGGCGCCTCAGAGTTAGTAAAACCTTAAAA
TATGACCACCGCAACGAGTATTATGtctttattttgttcttatacaaaaa
gcGTGTAGATCTACTTCAATATCCAGCATCCAACAATCATTTCAACGATT
GATGAGCAGTCCACTTGGTTGAAGGTTGCGCaatcattaaattcaaaata
attttctttaaaaaaaaatattacaaattaTTGAAGAAATCAACATCCTA
CCAAAATCTGGAAGCTTTGCTatttaaagttttgatttgGGTACGGGTCC
AGAAATAAAGACAGGACAAATATACCCATCATAAGAAAATTGTTTATTAA
CCAAATACCACCTGTCTGAAACCCAGGTCCCTATAGGGCTCCATTCATGA
TTTTGAAACTTCTTTTCTGTTATGAATTTTTCAACCGGAACCATTCCTTC
AGAGAGAAATCCGTATTCGTGTCCAAACTTCTCAAATGCCACGCCCATTA
TGGCAACATGTACACCCAAACCACGGTATTTACGAGTGGTCACGACATCT
TCTAAGTAAATAAGTTCATCAAATCCAAACTTATCGTAATATTCGAGAAT
AGGGTGGCAGACAGAGTATCTGTGTTGACAATATTTTCGTATTTCTGGAC
TATAGTTCTGGTCATTTGAAATTCTCTTATTAAGATCCACAAAATCTTCT
TGAAATTCTTGCTTTGTTATTAGATAACTCAACCCCAAAGCAACAACCTC
TCCAGAATCCTTTTCAACAGCTACCAATgaaaatttattgaatttagGAT
CCTCCGCTAAATTAGGATGTAAAATATCTTCAATATGTGCATATTTCAAT
CTTTCATCTTGTGTGATTCCCATACGTTTGTAATAAGTTGGTACTAAATA
TTCGTCCAAAAGTTGTTGAACTTCCCGAGAATGCTTTTCAATGTTGTATT
CCACGATTTCCAATCCTTGTATCTTTAGCGATTCCATCTTGATGGTTAGT
GTTCATTTAACAATATATAAAAAATGCAATACCAAAG Run BLAST on NCBI protein sequence of TCONS_00003518-protein >TCONS_00003518-protein ID=TCONS_00003518-protein|Name=TCONS_00003518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MESLKIQGLEIVEYNIEKHSREVQQLLDEYLVPTYYKRMGITQDERLKYA
HIEDILHPNLAEDPKFNKFSLVAVEKDSGEVVALGLSYLITKQEFQEDFV
DLNKRISNDQNYSPEIRKYCQHRYSVCHPILEYYDKFGFDELIYLEDVVT
TRKYRGLGVHVAIMGVAFEKFGHEYGFLSEGMVPVEKFITEKKFQNHEWS
PIGTWVSDRWYLVNKQFSYDGYICPVFISGPVPKSKL Run BLAST on NCBI transcript from alignment at sc0000028:130568..131854 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003518 ID=TCONS_00003518|Name=TCONS_00003518|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at sc0000028:130568..131854 (Clytia hemisphaerica)
CTTTGGTATTGCATTTTTTATATATTGTTAAATGAACACTAACCATCAAG
ATGGAATCGCTAAAGATACAAGGATTGGAAATCGTGGAATACAACATTGA
AAAGCATTCTCGGGAAGTTCAACAACTTTTGGACGAATATTTAGTACCAA
CTTATTACAAACGTATGGGAATCACACAAGATGAAAGATTGAAATATGCA
CATATTGAAGATATTTTACATCCTAATTTAGCGGAGGATCctaaattcaa
taaattttcATTGGTAGCTGTTGAAAAGGATTCTGGAGAGGTTGTTGCTT
TGGGGTTGAGTTATCTAATAACAAAGCAAGAATTTCAAGAAGATTTTGTG
GATCTTAATAAGAGAATTTCAAATGACCAGAACTATAGTCCAGAAATACG
AAAATATTGTCAACACAGATACTCTGTCTGCCACCCTATTCTCGAATATT
ACGATAAGTTTGGATTTGATGAACTTATTTACTTAGAAGATGTCGTGACC
ACTCGTAAATACCGTGGTTTGGGTGTACATGTTGCCATAATGGGCGTGGC
ATTTGAGAAGTTTGGACACGAATACGGATTTCTCTCTGAAGGAATGGTTC
CGGTTGAAAAATTCATAACAGAAAAGAAGTTTCAAAATCATGAATGGAGC
CCTATAGGGACCTGGGTTTCAGACAGGTGGTATTTGGTTAATAAACAATT
TTCTTATGATGGGTATATTTGTCCTGTCTTTATTTCTGGACCCGTACCca
aatcaaaactttaaatAGCAAAGCTTCCAGATTTTGGTAGGATGTTGATT
TCTTCAAtaatttgtaatatttttttttaaagaaaattattttgaattta
atgattGCGCAACCTTCAACCAAGTGGACTGCTCATCAATCGTTGAAATG
ATTGTTGGATGCTGGATATTGAAGTAGATCTACACgctttttgtataaga
acaaaataaagaCATAATACTCGTTGCGGTGGTCATATTTTAAGGTTTTA
CTAACTCTGAGGCGCCCATTGTCTtaggaaatttcgaaaatatccAGGAA
TTCTATAAAATTTCGGTTAATATCCAGGGAAAGGGTGTGACTCGTGGGAA
CTATTTTTATTTCAGGATGacccatttttataaaaacagcaattgaaaag
ttttattttttattgtttagaaATCATTTTTTATGACATTGTACGAAAAA
TCGTGTCACGCGTCACTATCGCCACTTACTCATGTCATGAATTGCATAAC
ATCTTCAGATGTCTCTTGTAAAATAACTTCTGAAACC Coding sequence (CDS) from alignment at sc0000028:130568..131854 >TCONS_00003518 ID=TCONS_00003518|Name=TCONS_00003518|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000028:130568..131854 (Clytia hemisphaerica)
ATGGAATCGCTAAAGATACAAGGATTGGAAATCGTGGAATACAACATTGA
AAAGCATTCTCGGGAAGTTCAACAACTTTTGGACGAATATTTAGTACCAA
CTTATTACAAACGTATGGGAATCACACAAGATGAAAGATTGAAATATGCA
CATATTGAAGATATTTTACATCCTAATTTAGCGGAGGATCctaaattcaa
taaattttcATTGGTAGCTGTTGAAAAGGATTCTGGAGAGGTTGTTGCTT
TGGGGTTGAGTTATCTAATAACAAAGCAAGAATTTCAAGAAGATTTTGTG
GATCTTAATAAGAGAATTTCAAATGACCAGAACTATAGTCCAGAAATACG
AAAATATTGTCAACACAGATACTCTGTCTGCCACCCTATTCTCGAATATT
ACGATAAGTTTGGATTTGATGAACTTATTTACTTAGAAGATGTCGTGACC
ACTCGTAAATACCGTGGTTTGGGTGTACATGTTGCCATAATGGGCGTGGC
ATTTGAGAAGTTTGGACACGAATACGGATTTCTCTCTGAAGGAATGGTTC
CGGTTGAAAAATTCATAACAGAAAAGAAGTTTCAAAATCATGAATGGAGC
CCTATAGGGACCTGGGTTTCAGACAGGTGGTATTTGGTTAATAAACAATT
TTCTTATGATGGGTATATTTGTCCTGTCTTTATTTCTGGACCCGTACCca
aatcaaaactttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003518-exon-sc0000028-1491911889:130568..131854 | TCONS_00003518-exon-sc0000028-1491911889:130568..131854 | Clytia hemisphaerica | exon |
| TCONS_00003518-exon-sc0000028-1510915933:130568..131854 | TCONS_00003518-exon-sc0000028-1510915933:130568..131854 | Clytia hemisphaerica | exon |
| TCONS_00003518-exon-sc0000028-1575043694:130568..131854 | TCONS_00003518-exon-sc0000028-1575043694:130568..131854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:130568..131854 . |
Blast
The following BLAST results are available for this feature:
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