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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003539 ID=TCONS_00003539|Name=TCONS_00003539|organism=Clytia hemisphaerica|type=transcript|length=2395bpRun BLAST on NCBI transcript from alignment at sc0000030:113879..145087+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003539 ID=TCONS_00003539|Name=TCONS_00003539|organism=Clytia hemisphaerica|type=transcript|length=31209bp|location=Sequence derived from alignment at sc0000030:113879..145087+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00003539 vs. Swiss-Prot (Human)
Match: RA51C (DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 3.777e-103 Identity = 163/350 (46.57%), Postives = 235/350 (67.14%), Query Frame = 2
Query: 2 KLIKTNMGKELCSFPLSPKQLNILRQGGFVQDTDVIELSPSQLAEELGIALKDSLAILNIIK----NNKADKLPVEKS-----AYDLLKEEEEETSIVTFCAALDEMVGGGIPLGKVTEFCGGPGMGKTQFGIQLAVDAIIPELFGGVGGESIYIDCEGSFICERVVEIAKAASNHIRSVAESNSEEEGTREALQEFTLQSILQNIHVYRCHDYIQLIALSHILPDVLKNNGKVKIIILDSIAFHFRHDFEDMALRTRLLHGLVQSFMKMAHDHGLAVVIMNQMTTKIADDEKHSKLIPALGTSWGHACTIRIVLQTMNGQRFAHLLKSPTMQESTAPFDITIDGIRDVI 1024
K + M ++L SFPLSP L GF +++E+ PS+L++E+GI+ ++L L II+ NK +S A +LL++E + I+TFC+ALD+++GGG+PL K TE CG PG+GKTQ +QLAVD IPE FGGV GE+++ID EGSF+ +RVV++A A H++ +AE + EE R+AL++FTL +IL +I+ +RC DY +L+A ++LPD L + KV+++I+D IAF FRHD +D++LRTRLL+GL Q + +A++H LAV++ NQMTTKI D + L+PALG SWGHA TIR++ QR A L KSP+ +E T F I G RD +
Sbjct: 4 KTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEH-RKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKI--DRNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350 The following BLAST results are available for this feature:
BLAST of TCONS_00003539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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