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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003557 ID=TCONS_00003557|Name=TCONS_00003557|organism=Clytia hemisphaerica|type=transcript|length=1002bp
CCGACTCTTCTCTAAACTTGCCGACCTAAAAACTTTTATTGCTATTTCGA
CGAAgagaattttttcttcttcaaaaattacaaaatgtagacaaaaattc
catgaatgaacaaaataaaagaaattttccgaccgactgactcatctaaa
aaaatctagggtcgggtgacagTAAACCAGGAATTTTTAGATCCAGCCTG
AACGAATCATGTTTTGGTTTCAATAGCTTCTTCATCATCAACATTCTCAT
TTTGGACAGCCTCAATTTCACAAGCAACATCCTCATCTTGGGCAATAACA
GCCTCGATTTCACAAGCAGCAGCCTCACTTTCATTCATACTAGCACGTGG
GTCACCTTTACATTCGAGTTCGTGTCTTTCCGTTCGTTTTCGTTTAGCAA
AGCCCTTTCCACACTTTGAGCAATGGAAAGGATAAAGTTTCAAATGAACC
ATGTTCACGTGGTCTTTTAAACGATATGAAGCTGCAAAAGCTTTTGAACA
ATGCTCGCAAACAAATGTCTTTCGTCCTTCTTCGTGAACAGCCAAATGTC
TTCTCAAGTGAGGCATATCTTGACAAAATTTACGACAATAAGAACATGTG
TATTTTTCAATCATCGCTGGTTTCATTGTATTCATACGAGCCGCAACTTT
CGTCTTTGTTTCGCTAATTTCCTCAATAGTAATTTCTTCCACAGGCTCAG
GCGCTCCCTCAAAGTCATTTACATCGACAGCCTCGTTCCCAGGTTTTGCA
TCAGTATTTATTACGTCATTGTTTCCACAAACAGTATCATGCTTTTCCCA
ACACAATTGTACGTCACGACATAATTTATGACAATAATTACACGTGCTTT
TCTCAATTCGTTTCCATACTCTTTCCTCCATTAATTTGCTTTTGATTTCA
TCTTGAGCCTCTTTCGATAATGTGCTGACCAAATCGAGCGTCAGCAAACT
ctggaaaaataaaatacacCAGTTTCACAGATCAACCTACACTACAGCCA
AC Run BLAST on NCBI transcript from alignment at sc0000030:333450..342159+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003557 ID=TCONS_00003557|Name=TCONS_00003557|organism=Clytia hemisphaerica|type=transcript|length=8710bp|location=Sequence derived from alignment at sc0000030:333450..342159+ (Clytia hemisphaerica)
CCGACTCTTCTCTAAACTTGCCGACCTAAAAACTTTTATTGCTATTTCGA
CGAAgagaattttttcttcttcaaaaattacaaaatgtagacaaaaattc
catgaatgaacaaaataaaagaaattttccgaccgactgactcatctaaa
aaaatctagggtcgggtgacagTAAACCAGGAATTTTTAGATCCAGCCTG
AACGAATCATGTTTTGGTTTCAATAGCTTCTTCATCATCAACATTCTCAT
TTTGGACAGCCTCAATTTCACAAGCAACATCCTCATCTTGGGCAATAACA
GCCTCGATTTCACAAGCAGCAGCCTCACTTTCATTCATACTAGCACGTGG
GTCACCTTTACATTCGAGTTCGTGTCTTTCCGTTCGTTTTCGTTTAGCAA
AGCCCTTTCCACACTTTGAGCAATGGAAAGGATAAAGTTTCAAATGAACC
ATGTTCACGTGGTCTTTTAAACGATATGAAGCTGCAAAAGCTTTTGAACA
ATGCTCGCAAACAAATGTCTTTCGTCCTTCTTCGTGAACAGCCAAATGTC
TTCTCAAGTGAGGCATATCTTGACAAAATTTACGACAATAAGAACATGTG
TATTTTTCAATCATCGCTGGTTTCATTGTATTCATACGAGCCGCAACTTT
CGTCTTTGTTTCGCTAATTTCCTCAATAGTAATTTCTTCCACAGGCTCAG
GCGCTCCCTCAAAGTCATTTACATCGACAGCCTCGGTCCCAGGTTCGGCA
TCAGTATTTATTACGTCATTGTTTCCACAAACAGTATCATGCTTTTCCCA
ACACAATTGTACATCACGACATAATTTATGACAATAATTACACGTGCTTT
TCTCAATTCGTTTCCACACTCTTTCTTCCATTAATTTGCTTTTGATTTCA
TCTTGAGCCTCTTTCGATAATGTGCTGACCAAATCGAGCGTCAGCAAACT
ctggaaaaataaaatacacCTGTTTCACAGATCAACCTACACTACAACCA
ACTCCCCCCTCATTCGATCTTCAGGGAGCCAAGAATAGAAAGACTCGAAT
TACGAAGAGTATTTCAAATGACTTTCTAGCTGAGAGGCGCTTAATATTTT
AGTTGAATCACAGAgggattcgaataatagaaagaaTTTGTTTCTCGTGA
CCGAGAAGATAACATAATTTTGCACTGCAAGAGGgatattttggacatat
ttAACAAGGCCTCAATAGTAGTAACCTGCTTTAACCGgtgtattttattt
ttccttaTTAGTTTACAAGCCCGTATTTGTTTACGACTGTTGCATATTCT
AAAGTCTGGTGATGTTCTACAGCTAACTGTTAGAGAAGCAGGGTGAAATG
TCAACTTTTGATACTTAACATGCAGCATGTTCACTAGTACTGAAAAAAAT
AGGACCAAATTAAGGGTTTCGAACTTTTATTTCATGTTTAGCTCCCACGT
GTGCCCTATAAGCCTGACTGATGCAAAGAAAAATGATAGCACTAACCACA
TATTTCTGTAAAGCTCGAAGGAGCCATCTAGTGCGCTTTGACTGAAAAgt
gtggttaggtaggaaatcctacctaggtggcgtgacattacaatagaatt
tcagcgcttgaccaataagaagcttcgcaggtattcaaaaacaatagcaa
caatatgcCAACTAGCATCTTCAGACTCTACAGAAATCTGTGGCACTAAC
GCAATGATTACTAACCGGTTATTACCAACATATTGTGAATTTGTAACAAG
ATCTTTCATTTACGGTTTAGACCGATGCTCGTGGCGAAGTATTCTCCGTC
ATTCTTCGTCGACAACTAAAAACAACAATAACATTAGAGCTGAAAAACAG
AAGAGCTTAGAATGTAAAAATCATAATATTTGATACAAAAGGGGAATTAC
CTGcgaaatctaaaacataacaatGGTTTTTAAGTGCTCTAATTTACTTC
TCAGATGCCTAATAAACGGGTCCCGGTAATTAGGTCCTCCGTTTattccg
accccccccccctcgtttATTAGGCGACCGAGAGTAACACTTTGGACCTT
AAGATCATAGGATCCGGAAGTATTGAaatcgaactttaaattctgaaaac
gtCCAAATGAACAATATTATCAANtcccccccccccccccctcgtttATA
AGGCGACCGAGAGTAACACTTTGGATCCGGAAGTGTTGAaatcgaacttt
aaattctgaaaacgtCCAAATGATCAATATTATCAAtttattcgaactaa
aatattgatcTCCTCAGCTGGAAAGCAGCATAAAAaagtctctgtaattc
gaatatttctctaGTTCGAAGAAActtccttgaagatcgaattagagaga
gctaACTGTATCCTGCACTTCACTGTTCATAGCAAATATCTTGGAGCTAA
AAGGTTCTTTGGATAATAATAATACTTCGAAATTCTTAGCTTTCCAATGT
GTTTGAAAAGTTCACTCAAACACCCCTGTGTTAATggtaaattgactttg
atttcatcccttctcaaaaatcaatgtctaaaaattgcactccaaaacca
tcctcactggattttttaacctttgatcaataaaacttttatccccattg
gTATTTCAATAGGGATTTATATCTtcactgaagaaaaaaagttccaccgg
ggctttgagacaggggtgtattcaaGCTCTTTGAATGCTCAGACAAAGAT
TTATCATCCCCCAAATATTTGTTAGATGATAGGAAAAGTTTAAATATGAA
AGCCTAGAGATACCTAGGCTTGAAGCTTTGATGCAATGCACCCACTGTTT
CTTTATTATCAAtagagaaaaaagattttttaatgaTGAAGTCAATCGTC
AAACACGGTAACCATGGTAGAAATTAAGTCCTCATTTCTACTCTTGCTAC
GAGTAactaatattttgatttaactgacaataaaaaaaacttaaaaactt
atcatgaaattttcaccttGAATCCTTAGAAACtaatcaaaacatatttt
ttctaaTCAGAGTGATAATTCCTATTCACGATTCCGATTGTCTGTTCATC
AGGAAACGGATTAAAAACTGGGAACTTGTTTTCGATCGGTAAGTGTAAGG
AAAATTGTCAGCAATCTAAATCTTTCGtataaaccttcaaaagatctCTT
CCTTAACCTCTAACTGGTTGACCACCCACTCCTCACTTTAAAGCCACATG
ATccacaatcaaggtcataatatttgagaaaaaagggaaatccaccggga
agtttttgaaccacaatcgatttgtaagtgctctaaagtaggttggaagg
gtagagttttaactctgagttttagcGGTAGACTTAAAagcttaggacct
taggatctgaggattcaaaagttcaaaaatagtccaataagactcagaat
atagcctggaagtctgccagcccctcccaaattgaaatattcgattaaat
taaaaagatagccaaaaatcgactttctcgccagaactttaaatcttgaa
aaacgttaaaataaccaaaattctcaatatattatggccTTAATTGTAGT
ATCCAGTAATCGGGCTGTTATTTGAATAACTCCTAAATCAAGACTAAAAT
AATGGCCAAAAGTAATGGaatttcttacttttttggTATGAATTCacaaa
acccccccccccaccttTGACCCCTTTACAATGTGGAATTTCAATCGAAC
TTGACTCTGCAAGATTGTAGTAGGGGAGAAGAGGAGCCAGAAAAACAGTT
GAATAATTAGGATTCCATTTACTTTTGGCCAGTATTGTAGTTTAACAACA
TTATAGCAGGTACCTTATTGATTTCTTTATGTCTTGCTTTGCTGACAATC
TCCTCCAATACTTCACCATCGCCTTTGATCAGCCTAAAGATGAAAGAAAA
TAAGAGTCTAAAACATGAGGGTTATCTCTGTTTCACAAAGTGCTCTAAAG
CAAAACAAGCAGAGGAATGGCACGAGTAGAGACTGATCTAAGGGACCAAC
CAGGTAGTCTGATacacagacctctatagatatatttCTTTTAATAATTG
TTTTCCCTGAAGGATGCGCAGTTTCCGGTTCAAATCCCTACTCTTTCCTA
TTTTTTTGCTAAGTTCATTTATAAATACCCAAGCCTgatggccgtggacc
ccgtgaaaacaactGACTTCCCTAAAAGTGCTAACAGCGAGCATTCCACG
TATGAATATCGCGCGACTCTGAGCCAGAGCTGACGGATAAATACACCTAT
CTTTCCTTAACGACGCGGTCGCCTTTTGAAGGGTCTCTTAATAAATTTAC
AAGGCGTCAGAACTGCTTTTTAACGTCAATTTAACACGAACCCCTGGTCT
CCCacactttaaccctattcggcctagggggggggggctctttctgttcg
gaggtcaaactattggtaatagttcCTGAAATattagagcttttgccgtg
aaattttctgtaaattcctaacttttatttagcttcaaaataaaaaaaaa
tttgacacctaaatattttcacaccttgagcattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTTttctaatacaaatttatttttgatgtcaaata
tatcttttaaaccgtaatttattgaatatttaggataaaataagcatttt
aaactcagggaaCTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcca
aaaagacccactagatcaaaagttaaggggtggtacaggaaaagcccccc
ctagttctgaaccgcccctaaaagcctaggttgaatagggttaaaggttG
ATAATtagtgttttgtttttgattgaatTCTGAAAAAATGATGGGAATAA
ATAAGAGGTTGACAGCTCATTTAATACCTATTTCTGCCAGTCTCTGGATC
GTAAACTCTCCTGACAACACTTTGTTGTTTTTCGTATTCCTCTTTCGTCA
TCGGTACCAGCGTTCTGTAGTTAAGAAAACAATAAACTGTGACTTTTTTA
TTAATTGCAAAATCCATACCGACACTGATTTATCTCTTTAGATGACACAG
TAGTCTCCATAACCTTTATTCAAACATGGTTGCTTTATAAACATCAGGGa
agaaaatttcgcggttttttgacaaatccgcgaaatcaaATTCCACGAAA
CAAGAATATtctcttgatttaaaaattttggggcaaaataagccatattt
gaaacaaaaattccTCTTAACCGCAAAATTATATtccacgaaaatttctt
cccttaaggtagtggTGGTTGGAGAACCACTTTCAGATAAACTTAGAGCA
GAGATTATCGAAAACCCTGTAACCCACGTACCTTTTCTTTGGTGCTGCAG
AAGAACGCCCAGCATTGGAAACAACATTGTTCGCTGTTTCGTCGTTTCCC
TTGGGTGGTTTTGATGGATGACTTTTAGTTGTTTGATGATTGttcttcat
tttcgatttagctttcttttctttcttttccacCTAAATAAAGGAATCGA
AATTATCATAATACAGAAGAAATTCCATCACTATTAGGGCTTTTACTTTG
AATAGTCGAAATATTCtaataaaagtttttatatAAATCGCTATAAGAGG
AGCAGTCATTTAAGAACAGTCATATCAAAATCTCAGAAACTGAAGCAATC
AGGGTTAAAATCAGCCGACTATTAAATcgatgttttggaaattttttgtt
tcaatacTCGGGTATCAAAGGAAACGACACGGCGCAAGGCTATTGCAGAT
ATTGCTAAATTTCATTATGCCAAAAGAAAACaataccgtaaatcctcgaa
taagcacccccccttttagttaaaataatattataaccgccccgctcgaa
taagcacccccctttgaataagcgccccctccagggaggggcgcttattc
gaatttTGTTATAgattgaataagatattgagtagatacttgtctcttaa
aaagaaagaaagcgattaagaataaaatgatagaaattgtcaattggatt
tttccaatttttcgtttattcatccttttttgaaaaatcaaccctttgaa
acagttaagtttaagcagattccgaatttattgatatacgaatttcggaa
ataaaaaaataagcgccccgctcgaataagcactccgcttgaataagcgc
cccccttagagcctgaaaaattaaataagcgcacgggcgcttattcgagg
atttacggtgTTCATATAAAAAGCTAGAAATCAACTAGAAATTAAATTCG
ATATGTAGTTGTAAAAAGTATTAAAAGCCTACTTGTTTATGTTGGAGATA
TCAGAAGTATCTTgtttaaaggaaagaaattttcccggaatttaatttca
ctgttcacagctcaaaatttggaaatttcgcggttgagataattttttgt
ttcgaatatggcctattttgccctaaaaagaccaattttatagAGGTGAT
TTATTAAATCCTGAGAATACTCGTGTTTCACGGAATTTAGTTTCGCGGAT
TTATCAAAAAACCACGAAATGAAATTCCGCGATAATTTGTcccgtgaaaa
tttcttcccttaaggtatgagGATGATGATAGATAAAATCgaataaaatt
atttaaaaaacgtaaaatatgGACAAGCGGTAAAATATCCGATctctaac
acccctgtctcgatAACATGGTAAAAAATGTTCTGGCTAGTAAGTTGGGA
TGAGATAATACAGCGATAACGTTAACAATTGGATGTCATTCCCAGTGGAG
ATGATTCATTTTGCCCCTAAAATGGCCTCCTCCTAATGTTGTTTGATACA
AATACAGTGGAGTCCCCATAACTCAAGCACTGCgtggggaacacaaattt
gtttgaattaaggaaatttcgatttgaagtcagttggatgcctagatcaa
aagttatgctaaatttaagattttgggattttgcagggttttagctggat
tttatgatatgcctgcacaagatagtcataaaacctgatctggtcggagT
ATAATTGTataatttggtatacatgctgctaataggattatattaaaagt
caaaaactttcagagtgttaaaaacaaatttcagtgagctattagcaaaa
gagtgccagcctggtggaaaataccccccctgataaaaatagggttaagg
tttaaaaatcattgtaaagggaccataaaacttgttcgagtatTTGGCTA
CGTGTATCGCAGCATATTCTTCTCGAGGTTCTTCGCACGGATATGAGTTG
TGCTAATTTTTCTTATGTGTAGGGTGTTGTGTTACACGGTTTCTCATATA
CACGAGGCtgaactttaaaaaatgttggtttaCCGTCAGCTGACCGACTC
TTCTCTAAACTTGCCGACCTAAAAACTTTTATTGCTATTTCGACGAAgag
aattttttcttcttcaaaaattacaaaatgtagacgaaaattccatgaat
gaccaaaataaaaaaatttttccggccgacgACCCATCTaaaaaatctag
ggtcgggtgacagCAAACCAGGAATTTTAAGGTCTAGCCTGAACGAATCA
TGTTTTGGCTTCAATAACTTCTTCATCCTCACCAACATCCTCATCTTGGA
CAATAACAGCCTCGATTTCACAAGCAGCAGCCTCACTTTCATTCATACTA
GCACGTGGGTCACCTTTACATTCGAGTTCGTGTCTCTCCGTTCGTTTTCG
TTTAGCAAATCCCTTTCCACACTTTGAACAATGGAAAGGATAAAGTTTCA
AATGGACCATGTTCACGTGGTCTTTCAAACGATATGAAGCTGCAAAAGCT
TTTGAACAATGCTCGCAAACAAATGTCTTTCGTCCTTCTTCGTGTACAGC
CAAATGTCTTCTCAAGTGAGGCATATCACGACAAAATTTACGACAATAAG
AACATGTGTATTTTTCAATCATCTCTGGTTTCATTGTATTCATACGAGCC
GCAACTTTCGTCTTTGTTTCGCTAATTTCCTCAATAGTGATTTCTTCCAC
AGGCTCAGGCGCTCCCTCAAAGTCATTTACATCGACAGCCTCGTTCCCAG
GTTTTGCATCAGTATTTATTACGTCATTGTTTCCACAAACAGTATCATGC
TTTTCCCAACACAATTGTACGTCACGACATAATTTATGACAATAATTACA
CGTGCTTTTCTCAATTCGTTTCCATACTCTTTCCTCCATTAATTTGCTTT
TGATTTCATCTTGAGCCTCTTTCGATAATGTGCTGACCAAATCGAGCGTC
AGCAAACTctggaaaaataaaatacacCAGTTTCACAGATCAACCTACAC
TACAGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003557-exon-sc0000030-1491911889:333450..334143 | TCONS_00003557-exon-sc0000030-1491911889:333450..334143 | Clytia hemisphaerica | exon |
| TCONS_00003557-exon-sc0000030-1510915933:333450..334143 | TCONS_00003557-exon-sc0000030-1510915933:333450..334143 | Clytia hemisphaerica | exon |
| TCONS_00003557-exon-sc0000030-1575043694:333450..334143 | TCONS_00003557-exon-sc0000030-1575043694:333450..334143 | Clytia hemisphaerica | exon |
| TCONS_00003557-exon-sc0000030-1491911889:341852..342159 | TCONS_00003557-exon-sc0000030-1491911889:341852..342159 | Clytia hemisphaerica | exon |
| TCONS_00003557-exon-sc0000030-1510915933:341852..342159 | TCONS_00003557-exon-sc0000030-1510915933:341852..342159 | Clytia hemisphaerica | exon |
| TCONS_00003557-exon-sc0000030-1575043694:341852..342159 | TCONS_00003557-exon-sc0000030-1575043694:341852..342159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000030 | supercontig | sc0000030:333450..342159 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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