TCONS_00003580 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003580
Unique NameTCONS_00003580
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003580 ID=TCONS_00003580|Name=TCONS_00003580|organism=Clytia hemisphaerica|type=transcript|length=1975bp
TATTAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTAT
CAACTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACT
TTAGATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGA
TAACCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAA
ATAAGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTT
TGTAATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaat
ccGCTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagttttta
aaaatttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAA
ACGTTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtac
caaaacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtg
atttcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGG
AGAGAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGA
GCTTTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGA
GAACAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGC
TTTCTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGA
ATGTCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATG
AACTGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACT
GTGGAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAAT
GGTGTTAGTTGAACTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTT
TACAATTCAACAAAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAA
GACAATGTTATGGAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGttca
taCAGACACGACTGATTATCCATACTCAACTGACTATCGAGACTCAACAT
ATTCTGGCTACGATACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCA
CCAACCTCATTGGGAAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCT
ATCTCCAGAACAATTAAAGAAAGACATCAGTGATGTTACACGCTCAAAAG
TTTATGATGCAAATTCAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAA
GGAAGACAAAGAACGGgtAAATGTCTAACAGACACAACTGATTATCCAAA
CACAACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTG
TTCCATTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAA
TATCATACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGA
TTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGA
ATCCAAGACCAGTTCCTTTATTGAATCCACGACCAGTCATAAAGAAATAT
CACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACG
AAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGA
AATTTAAGAGATTGAGTCCATATGNTGGTGATTCAACAAATTCTGGCTCT
GATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCC
TTCATTGAATCCAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAA
AGAAATATCACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGA
AAAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATT
GGCGGAGAAATTTAAGAGATTGAGT
Run BLAST on NCBI

protein sequence of TCONS_00003580-protein

>TCONS_00003580-protein ID=TCONS_00003580-protein|Name=TCONS_00003580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=658bp
IRDTIWFSVKFLLNYLSTASILTSLEREAKLETLDLVCTAATINSLLIYD
NRIQNIMQLESFSNTENKLTQIFQKIEATQALLCNGNLKVDVHFQFKKKI
RFHLECPEADNIERVFKNLLKRYFSKFRTITEETFEVSMLRFNKLKQKST
KTKNVPLKIEITSSEIDFKKFKNRKSEESKALWRELKECVKKELPIAEVE
LWGWEQGSLLIFLSLWRTDENLWSEKDIPTIDSFLLNLPSMVEDFLPLCE
CQCKRIGDGVEMNEKNELSSMAGIAVQFSITTTVEDTFYEDFEPATFNEM
VLVELGYSTPEECEESLQFNKSTEDWIWVENPQDNVMEFSRGEMHSQSVH
TDTTDYPYSTDYRDSTYSGYDTDSEVLSPTVTPPTSLGRGFKGQVRSPIL
SPEQLKKDISDVTRSKVYDANSDSDVFFSTWKKGRQRTGKCLTDTTDYPN
TTDSGSNSDSQIWFQTVPLSSSSPKKTKRRVAKYHTGSTGDSTNSGSDTD
SELLFSAVQQLPAPSLNPRPVPLLNPRPVIKKYHVRRISKHAAIQTRKAR
SPRKKPNREQHYKLAEKFKRLSPYXGDSTNSGSDTDSELLFSAVQQLPAP
SLNPRPVPSLNPRPVIKKYHVRRISKHAAIQTRKARSPRKKPNREQHYKL
AEKFKRLS
Run BLAST on NCBI

transcript from alignment at sc0000030:841144..846365+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003580 ID=TCONS_00003580|Name=TCONS_00003580|organism=Clytia hemisphaerica|type=transcript|length=5222bp|location=Sequence derived from alignment at sc0000030:841144..846365+ (Clytia hemisphaerica)
TATTAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTAT
CAACTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACT
TTAGATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGA
TAACCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAA
ATAAGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTT
TGTAATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaat
ccGCTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagttttta
aaaatttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAA
ACGTTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtac
caaaacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtg
atttcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGG
AGAGAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGA
GCTTTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGA
GAACAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGC
TTTCTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGA
ATGTCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATG
AACTGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACT
GTGGAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAAT
GGTGTTAGTTGAACGTAAGTTTAGTATATAAATGTATTTTACACAAATTA
GCATagtttttattacaaattagTGACAAGCTTATGGATATTCATTATAA
AACaataagaaaattattattgGCAATATTGGTTGATTTCATCAAGCTCT
ATTTTTTTGGCTATTCACAGGGTAATACTTTTAGCACGtcaaaaaagtgc
aaaaataaaAGACTTTTTTTGGGCACTAAAGGCTGCGCTAAAATTAAAAG
ATACAAAAATTTTATGATTAAAATATTGAAGTAGAATCAACTCGTTATCT
GTCTTGAGGGTAAAGTATTTGcacaaaaaatgttcaaaaaacaTAATGAG
AATTAAAGTGTGTGCAAATcactattttttgtacaaaaaagttTAGGGAA
CGGAAATTGAAGGTTTCCTCTATGCTCTTTAAAATATAATCGATTGCCAA
TAAATTCTTTAgtgtttcatattttttttcattgaattcttccttttttt
agTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTTTACAATTCAACA
AAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAAGACAATGTTATG
GAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGGTATATTTattatact
ttttattttaaaagttttggctAGCCTGTCTTGTACTCTATTCATTGGAA
CAATGTCAAACTACGACAATCTTGAAAGTTCTACTGTATATTAATCATCG
AAAAATTTTAATGCACAGGAGTACAGCatgctattcatgatatgcaccac
tggagagtcttctgagaacttttaaaattttccatccaatacgtcactta
acaatagaaaaagtgacgtattgggtggaacaaaaacagaaaagttgcat
aatttcgtgaggTCATtgtagtggtgcatatcatgaacaGGCAAACAAAT
TGAATTTTCTAAAcactgttttttcaaaaaagttcataCAGACACGACTG
ATTATCCATACTCAACTGACTATCGAGACTCAACATATTCTGGCTACGAT
ACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCACCAACCTCATTGGG
AAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCTATCTCCAGGTATAG
TATTCTTTTCTTATAATGGATCTTCCCATTGTTAGGTTTTTTTAGATAGA
AAACCTTTGTataattcaaaaattaaaataataatcaataataataatag
ttaACAACAATTAATACCAAATCAAATGTAGAAACAGGAAATTTATTTAA
ATCATttatattgttattattttttattacccGAGTGAGAGGGCCATAGT
CGATATAAACAAAATGACGCTATCGATTCTCACAAATTGTTCTGATCAAA
GTGACGTCATAGGAATTTATATTCCACGTTATAGACCGGGAAATGAGGGA
CAATATTTTTTGACATCGGTCAATATTTTATGGTATTGTCGTCATAAATA
GTTAGTGTAAGGTTTATCATTTCCAAACCTTTGACAATTTCAGAACAATT
AAAGAAAGACATCAGTGATGTTACACGCTCAAAAGTTTATGATGCAAATT
CAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAAGGAAGACAAAGAACG
GGTAAGCTTTCCAGTCTCAGCCCAGAGAGGAAAGATTTCCCTGATTAATT
TAAATCCggattcttttgaattttgaatgaatctTCCTAATTTGGGAACT
TTACGGTGTTGGTATCATTCTAAATTAGAAGACAAATTCCAAATTATTCC
CTAAAGAAATTTAGGATTCAAATTGACAATGAATCCTGAATTCAAAAtga
tattggcaattttgggtattttaacgaaTTTCAGAATTGCAGTTTCGGTA
TTttcactttgtttcattggaaTTTTCAATTTGGAAGGGGTTAattggct
tccaggctatagtTCTCATCcctattgaaacatttttcagcttttagaTC
CTGGGATTCTAAGTCTGCTAACATTTTTGAGGCTGATGCTGAgcaaatga
aattatttttccacACAATCTGTTGTAATTATGTTTCATCCAGATTATTT
ATTATTGTTataatttattcaatttttaatattttgatttttcaggtAAA
TGTCTAACAGACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAA
CTCAGATTCTCAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtc
caaaaaagacaaaaagaagagTTGGTACGTTGAGCGGAATACCACAGATA
TCATGATTAGCTGCTAGTTATTGCTTTACGAACCAGCTGTTTTAAGAGTT
GGGCAAGGTCCactagtttttttttcttttttggataTGTTTTTTAAAGT
ACAACGAACTGAGtgaaatctcaaaatattttggtctgaaaatccttAAC
AGCGGAtcaatttgtttcattttcatttttttctccattttttagCGAAA
TATCATACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGA
TTCTGAGCTGTTGTTCTNtttttagacgtcaatctgcttacaactttgtt
tgatatcttttgactcaattattattttttagaaattttttcacagtgat
gacgttcgatgatcaaggattcacttaaGTGAAAATGATggttatagcac
ctttctacaagatcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTGGGAACTTTA
CGGTGTTGGAATCATTCTAAATTAGAAGACAAATTCCAAATTATTCCCTA
AAGAAATTTAGGATTCAAATTGACAATGAATCCTGAATTCAAAAtaatat
tggcaattttgggtattttaacgaatttcagaattgcagtttcagtattt
tcactttgtttcattggaaTTTTCAATTTGGAAGGGGTTAattggcttcc
aggctatagtTCTCATCcctattgaaacatttttcagcttttagaTCCTG
GGATTCTAAGTCTGCTAACATTTTTGAGGCTGATGCTGAgcaaatgaaat
tatttttccacACAATCTGTTGTAATTATGTTTCATCCAGATTATTTATT
ATTGTTataatttattcaatttttaatattttgatttttcaggtAAATGT
CTAACAGACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAACTC
AGATTCTCAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtccaa
aaaagacaaaaagaagagTTGGTACGTTGAGCGGAATACCACAGATATCA
TGATTAGCTGCTAGTTATTGCTTTACGAACCAGCTGTTTTAAGAGTTGGG
CAAGGTCCactagtttttttttcttttttggataTGTTTTTTAAAGTACA
ACGAACTGAGtgaaatctcaaaatattttggtctgaaaatccttAACAGC
GGAtcaatttgtttcattttcatttttttctccattttttagCGAAATAT
CATACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGATTC
TGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGAATC
CAAGACCAGTTCCTTTATTGAATCCACGACCAGTCATAAAGAAATATCAC
GTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACGAAG
CCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGAAAT
TTAAGAGATTGAGTCCATATGNTGGTGATTCAACAAATTCTGGCTCTGAT
ACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTC
ATTGAATCCAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAAAGA
AATATCACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAA
GCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGC
GGAGAAATTTAAGAGATTGAGT

Coding sequence (CDS) from alignment at sc0000030:841144..846365+

>TCONS_00003580 ID=TCONS_00003580|Name=TCONS_00003580|organism=Clytia hemisphaerica|type=CDS|length=11844bp|location=Sequence derived from alignment at sc0000030:841144..846365+ (Clytia hemisphaerica)
ATTAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTATC
AACTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACTT
TAGATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGAT
AACCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAAA
TAAGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTTT
GTAATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaatc
cGCTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagtttttaa
aaatttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAAA
CGTTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtacc
aaaacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtga
tttcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGGA
GAGAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGAG
CTTTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGAG
AACAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGCT
TTCTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGAA
TGTCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATGA
ACTGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACTG
TGGAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAATG
GTGTTAGTTGAACTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTTT
ACAATTCAACAAAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAAG
ACAATGTTATGGAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGttcat
aCAGACACGACTGATTATCCATACTCAACTGACTATCGAGACTCAACATA
TTCTGGCTACGATACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCAC
CAACCTCATTGGGAAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCTA
TCTCCAGAACAATTAAAGAAAGACATCAGTGATGTTACACGCTCAAAAGT
TTATGATGCAAATTCAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAAG
GAAGACAAAGAACGGgtAAATGTCTAACAGACACAACTGATTATCCAAAC
ACAACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTGT
TCCATTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAAT
ATCATACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGAT
TCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGAA
TCCAAGACCAGTTCCTTTATTGAATCCACGACCAGTCATAAAGAAATATC
ACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACGA
AGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGAA
ATTTAAGAGATTGAGTCCATATGNTGGTGATTCAACAAATTCTGGCTCTG
ATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCT
TCATTGAATCCAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAAA
GAAATATCACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAA
AAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTG
GCGGAGAAATTTAAGAGATTGAGTATTAGAGATACAATCTGGTTTTCTGT
AAAGTTTTTGTTGAATTATTTATCAACTGCATCAATTCTCACCAGTCTTG
AAAGGGAAGCAAAACTTGAAACTTTAGATCTTGTGTGCACTGCTGCAACT
ATAAATAGCCTGTTAATCTATGATAACCGAATACAGAATATTATGCAACT
AGAATCATTCTCAAATACTGAAAATAAGCTAACGCAAATATTCCAGAAGA
TTGAAGCTACACAAGCTCTTCTTTGTAATGGGAACTTGAAAGTCGATGTG
CATTTccaattcaagaaaaaaatccGCTTTCATTTGGAATGCCCAGAGGC
TGACAATATTGaaagagtttttaaaaatttgcttaaaaGATACTTTTCTA
AGTTTCGAACAATAACAGAAGAAACGTTTGAAGTTTCTATGCTACGATTC
AATAAATTGAAGCAGAAAAGtaccaaaacaaaaaacgttCCACTAAAGAT
TGAAATAACATCATCTGAAATtgatttcaagaaatttaaaaaccGTAAAT
CAGAGGAATCAAAAGCTTTATGGAGAGAATTGAAAGAGTGTGTCAAgaag
gaattacccatagctGAAGTTGAGCTTTGGGGCTGGGAGCAAGGTTCTCT
CTTAATTTTCCTCTCTCTTTGGAGAACAGACGAAAATCTTTGGTCTGAAA
AAGACATCCCTACAATTGACAGCTTTCTTCTAAACCTTCCATCAATGGTT
GAAGATTTTTTACCCTTGTGTGAATGTCAATGCAAGCGAATTGGTGATGG
TGTAGAAATGAATGAGAAAAATGAACTGTCTTCAATGGCTGGTATTGCTG
TTCAATTTTCTATTACAACGACTGTGGAGGACACATTTTATGAAGACTTC
GAACCAGCTACTTTCAATGAAATGGTGTTAGTTGAACTTGGTTATTCAAC
ACCTGAAGAATGCGAAGAAAGTTTACAATTCAACAAAAGTACTGAAGATT
GGATATGGGTAGAAAACCCACAAGACAATGTTATGGAATTTTCTAGAGGA
GAAATGCACTCTCAAAGTGttcataCAGACACGACTGATTATCCATACTC
AACTGACTATCGAGACTCAACATATTCTGGCTACGATACAGACTCTGAAG
TTTTGTCCCCGACTGTTACACCACCAACCTCATTGGGAAGAGGCTTTAAA
GGACAAGTGAGGAGCCCCATCCTATCTCCAGAACAATTAAAGAAAGACAT
CAGTGATGTTACACGCTCAAAAGTTTATGATGCAAATTCAGATTCTGATG
TTTTCTTCTCCACTTGGAAGAAAGGAAGACAAAGAACGGgtAAATGTCTA
ACAGACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAACTCAGA
TTCTCAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtccaaaaa
agacaaaaagaagagTTGCGAAATATCATACAGGCAGTACCGGTGATTCA
ACGAATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCA
ACAATTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTTATTGAATC
CACGACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAACATGCA
GCTATACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGA
ACAACATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTCCATATGNTG
GTGATTCAACAAATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCA
GCTGTCCAACAATTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTC
ATTGAATCCACGACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAA
AACATGCAGCTATACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCT
AACAGAGAACAACATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTAT
TAGAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTATCAA
CTGCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACTTTA
GATCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGATAA
CCGAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAAATA
AGCTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTTTGT
AATGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaatccG
CTTTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagtttttaaaa
atttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAAACG
TTTGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtaccaa
aacaaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtgatt
tcaagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGGAGA
GAATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGAGCT
TTGGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGAGAA
CAGACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGCTTT
CTTCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGAATG
TCAATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATGAAC
TGTCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACTGTG
GAGGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAATGGT
GTTAGTTGAACTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTTTAC
AATTCAACAAAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAAGAC
AATGTTATGGAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGttcataC
AGACACGACTGATTATCCATACTCAACTGACTATCGAGACTCAACATATT
CTGGCTACGATACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCACCA
ACCTCATTGGGAAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCTATC
TCCAGAACAATTAAAGAAAGACATCAGTGATGTTACACGCTCAAAAGTTT
ATGATGCAAATTCAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAAGGA
AGACAAAGAACGGgtAAATGTCTAACAGACACAACTGATTATCCAAACAC
AACAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTGTTC
CATTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAATAT
CATACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGATTC
TGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGAATC
CAAGACCAGTTCCTTTATTGAATCCACGACCAGTCATAAAGAAATATCAC
GTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACGAAG
CCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGAAAT
TTAAGAGATTGAGTCCATATGNTGGTGATTCAACAAATTCTGGCTCTGAT
ACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTC
ATTGAATCCAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAAAGA
AATATCACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAA
GCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGC
GGAGAAATTTAAGAGATTGAGTATTAGAGATACAATCTGGTTTTCTGTAA
AGTTTTTGTTGAATTATTTATCAACTGCATCAATTCTCACCAGTCTTGAA
AGGGAAGCAAAACTTGAAACTTTAGATCTTGTGTGCACTGCTGCAACTAT
AAATAGCCTGTTAATCTATGATAACCGAATACAGAATATTATGCAACTAG
AATCATTCTCAAATACTGAAAATAAGCTAACGCAAATATTCCAGAAGATT
GAAGCTACACAAGCTCTTCTTTGTAATGGGAACTTGAAAGTCGATGTGCA
TTTccaattcaagaaaaaaatccGCTTTCATTTGGAATGCCCAGAGGCTG
ACAATATTGaaagagtttttaaaaatttgcttaaaaGATACTTTTCTAAG
TTTCGAACAATAACAGAAGAAACGTTTGAAGTTTCTATGCTACGATTCAA
TAAATTGAAGCAGAAAAGtaccaaaacaaaaaacgttCCACTAAAGATTG
AAATAACATCATCTGAAATtgatttcaagaaatttaaaaaccGTAAATCA
GAGGAATCAAAAGCTTTATGGAGAGAATTGAAAGAGTGTGTCAAgaagga
attacccatagctGAAGTTGAGCTTTGGGGCTGGGAGCAAGGTTCTCTCT
TAATTTTCCTCTCTCTTTGGAGAACAGACGAAAATCTTTGGTCTGAAAAA
GACATCCCTACAATTGACAGCTTTCTTCTAAACCTTCCATCAATGGTTGA
AGATTTTTTACCCTTGTGTGAATGTCAATGCAAGCGAATTGGTGATGGTG
TAGAAATGAATGAGAAAAATGAACTGTCTTCAATGGCTGGTATTGCTGTT
CAATTTTCTATTACAACGACTGTGGAGGACACATTTTATGAAGACTTCGA
ACCAGCTACTTTCAATGAAATGGTGTTAGTTGAACTTGGTTATTCAACAC
CTGAAGAATGCGAAGAAAGTTTACAATTCAACAAAAGTACTGAAGATTGG
ATATGGGTAGAAAACCCACAAGACAATGTTATGGAATTTTCTAGAGGAGA
AATGCACTCTCAAAGTGttcataCAGACACGACTGATTATCCATACTCAA
CTGACTATCGAGACTCAACATATTCTGGCTACGATACAGACTCTGAAGTT
TTGTCCCCGACTGTTACACCACCAACCTCATTGGGAAGAGGCTTTAAAGG
ACAAGTGAGGAGCCCCATCCTATCTCCAGAACAATTAAAGAAAGACATCA
GTGATGTTACACGCTCAAAAGTTTATGATGCAAATTCAGATTCTGATGTT
TTCTTCTCCACTTGGAAGAAAGGAAGACAAAGAACGGgtAAATGTCTAAC
AGACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAACTCAGATT
CTCAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtccaaaaaag
acaaaaagaagagTTGCGAAATATCATACAGGCAGTACCGGTGATTCAAC
GAATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAAC
AATTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTTATTGAATCCA
CGACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAACATGCAGC
TATACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGAAC
AACATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTCCATATGNTGGT
GATTCAACAAATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGC
TGTCCAACAATTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTCAT
TGAATCCACGACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAA
CATGCAGCTATACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAA
CAGAGAACAACATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTATTA
GAGATACAATCTGGTTTTCTGTAAAGTTTTTGTTGAATTATTTATCAACT
GCATCAATTCTCACCAGTCTTGAAAGGGAAGCAAAACTTGAAACTTTAGA
TCTTGTGTGCACTGCTGCAACTATAAATAGCCTGTTAATCTATGATAACC
GAATACAGAATATTATGCAACTAGAATCATTCTCAAATACTGAAAATAAG
CTAACGCAAATATTCCAGAAGATTGAAGCTACACAAGCTCTTCTTTGTAA
TGGGAACTTGAAAGTCGATGTGCATTTccaattcaagaaaaaaatccGCT
TTCATTTGGAATGCCCAGAGGCTGACAATATTGaaagagtttttaaaaat
ttgcttaaaaGATACTTTTCTAAGTTTCGAACAATAACAGAAGAAACGTT
TGAAGTTTCTATGCTACGATTCAATAAATTGAAGCAGAAAAGtaccaaaa
caaaaaacgttCCACTAAAGATTGAAATAACATCATCTGAAATtgatttc
aagaaatttaaaaaccGTAAATCAGAGGAATCAAAAGCTTTATGGAGAGA
ATTGAAAGAGTGTGTCAAgaaggaattacccatagctGAAGTTGAGCTTT
GGGGCTGGGAGCAAGGTTCTCTCTTAATTTTCCTCTCTCTTTGGAGAACA
GACGAAAATCTTTGGTCTGAAAAAGACATCCCTACAATTGACAGCTTTCT
TCTAAACCTTCCATCAATGGTTGAAGATTTTTTACCCTTGTGTGAATGTC
AATGCAAGCGAATTGGTGATGGTGTAGAAATGAATGAGAAAAATGAACTG
TCTTCAATGGCTGGTATTGCTGTTCAATTTTCTATTACAACGACTGTGGA
GGACACATTTTATGAAGACTTCGAACCAGCTACTTTCAATGAAATGGTGT
TAGTTGAACTTGGTTATTCAACACCTGAAGAATGCGAAGAAAGTTTACAA
TTCAACAAAAGTACTGAAGATTGGATATGGGTAGAAAACCCACAAGACAA
TGTTATGGAATTTTCTAGAGGAGAAATGCACTCTCAAAGTGttcataCAG
ACACGACTGATTATCCATACTCAACTGACTATCGAGACTCAACATATTCT
GGCTACGATACAGACTCTGAAGTTTTGTCCCCGACTGTTACACCACCAAC
CTCATTGGGAAGAGGCTTTAAAGGACAAGTGAGGAGCCCCATCCTATCTC
CAGAACAATTAAAGAAAGACATCAGTGATGTTACACGCTCAAAAGTTTAT
GATGCAAATTCAGATTCTGATGTTTTCTTCTCCACTTGGAAGAAAGGAAG
ACAAAGAACGGgtAAATGTCTAACAGACACAACTGATTATCCAAACACAA
CAGATTCTGGTTCAAACTCAGATTCTCAAATTTGGTTCCAAACTGTTCCA
TTGTCATCAAGTTCtccaaaaaagacaaaaagaagagTTGCGAAATATCA
TACAGGCAGTACCGGTGATTCAACGAATTCTGGCTCTGATACAGATTCTG
AGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCATTGAATCCA
AGACCAGTTCCTTTATTGAATCCACGACCAGTCATAAAGAAATATCACGT
TAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGCACGAAGCC
CAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGGAGAAATTT
AAGAGATTGAGTCCATATGNTGGTGATTCAACAAATTCTGGCTCTGATAC
AGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAATTACCAGCTCCTTCAT
TGAATCCAAGACCAGTTCCTTCATTGAATCCACGACCAGTCATAAAGAAA
TATCACGTTAGAAGAATCTCAAAACATGCAGCTATACAAACAAGAAAAGC
ACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAACATTACAAATTGGCGG
AGAAATTTAAGAGATTGAGTATTAGAGATACAATCTGGTTTTCTGTAAAG
TTTTTGTTGAATTATTTATCAACTGCATCAATTCTCACCAGTCTTGAAAG
GGAAGCAAAACTTGAAACTTTAGATCTTGTGTGCACTGCTGCAACTATAA
ATAGCCTGTTAATCTATGATAACCGAATACAGAATATTATGCAACTAGAA
TCATTCTCAAATACTGAAAATAAGCTAACGCAAATATTCCAGAAGATTGA
AGCTACACAAGCTCTTCTTTGTAATGGGAACTTGAAAGTCGATGTGCATT
TccaattcaagaaaaaaatccGCTTTCATTTGGAATGCCCAGAGGCTGAC
AATATTGaaagagtttttaaaaatttgcttaaaaGATACTTTTCTAAGTT
TCGAACAATAACAGAAGAAACGTTTGAAGTTTCTATGCTACGATTCAATA
AATTGAAGCAGAAAAGtaccaaaacaaaaaacgttCCACTAAAGATTGAA
ATAACATCATCTGAAATtgatttcaagaaatttaaaaaccGTAAATCAGA
GGAATCAAAAGCTTTATGGAGAGAATTGAAAGAGTGTGTCAAgaaggaat
tacccatagctGAAGTTGAGCTTTGGGGCTGGGAGCAAGGTTCTCTCTTA
ATTTTCCTCTCTCTTTGGAGAACAGACGAAAATCTTTGGTCTGAAAAAGA
CATCCCTACAATTGACAGCTTTCTTCTAAACCTTCCATCAATGGTTGAAG
ATTTTTTACCCTTGTGTGAATGTCAATGCAAGCGAATTGGTGATGGTGTA
GAAATGAATGAGAAAAATGAACTGTCTTCAATGGCTGGTATTGCTGTTCA
ATTTTCTATTACAACGACTGTGGAGGACACATTTTATGAAGACTTCGAAC
CAGCTACTTTCAATGAAATGGTGTTAGTTGAACTTGGTTATTCAACACCT
GAAGAATGCGAAGAAAGTTTACAATTCAACAAAAGTACTGAAGATTGGAT
ATGGGTAGAAAACCCACAAGACAATGTTATGGAATTTTCTAGAGGAGAAA
TGCACTCTCAAAGTGttcataCAGACACGACTGATTATCCATACTCAACT
GACTATCGAGACTCAACATATTCTGGCTACGATACAGACTCTGAAGTTTT
GTCCCCGACTGTTACACCACCAACCTCATTGGGAAGAGGCTTTAAAGGAC
AAGTGAGGAGCCCCATCCTATCTCCAGAACAATTAAAGAAAGACATCAGT
GATGTTACACGCTCAAAAGTTTATGATGCAAATTCAGATTCTGATGTTTT
CTTCTCCACTTGGAAGAAAGGAAGACAAAGAACGGgtAAATGTCTAACAG
ACACAACTGATTATCCAAACACAACAGATTCTGGTTCAAACTCAGATTCT
CAAATTTGGTTCCAAACTGTTCCATTGTCATCAAGTTCtccaaaaaagac
aaaaagaagagTTGCGAAATATCATACAGGCAGTACCGGTGATTCAACGA
ATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGCTGTCCAACAA
TTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTTATTGAATCCACG
ACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAACATGCAGCTA
TACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAACAGAGAACAA
CATTACAAATTGGCGGAGAAATTTAAGAGATTGAGTCCATATGNTGGTGA
TTCAACAAATTCTGGCTCTGATACAGATTCTGAGCTGTTGTTCTCAGCTG
TCCAACAATTACCAGCTCCTTCATTGAATCCAAGACCAGTTCCTTCATTG
AATCCACGACCAGTCATAAAGAAATATCACGTTAGAAGAATCTCAAAACA
TGCAGCTATACAAACAAGAAAAGCACGAAGCCCAAGAAAAAAGCCTAACA
GAGAACAACATTACAAATTGGCGGAGAAATTTAAGAGATTGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001997XLOC_001997Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003580-proteinTCONS_00003580-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003580-exon-sc0000030-1491911889:841144..842057TCONS_00003580-exon-sc0000030-1491911889:841144..842057Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:841144..842057TCONS_00003580-exon-sc0000030-1510915933:841144..842057Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:841144..842057TCONS_00003580-exon-sc0000030-1575043694:841144..842057Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1491911889:842546..842677TCONS_00003580-exon-sc0000030-1491911889:842546..842677Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:842546..842677TCONS_00003580-exon-sc0000030-1510915933:842546..842677Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:842546..842677TCONS_00003580-exon-sc0000030-1575043694:842546..842677Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1491911889:843026..843187TCONS_00003580-exon-sc0000030-1491911889:843026..843187Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:843026..843187TCONS_00003580-exon-sc0000030-1510915933:843026..843187Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:843026..843187TCONS_00003580-exon-sc0000030-1575043694:843026..843187Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1491911889:843587..843694TCONS_00003580-exon-sc0000030-1491911889:843587..843694Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:843587..843694TCONS_00003580-exon-sc0000030-1510915933:843587..843694Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:843587..843694TCONS_00003580-exon-sc0000030-1575043694:843587..843694Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1491911889:845486..845614TCONS_00003580-exon-sc0000030-1491911889:845486..845614Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:845486..845614TCONS_00003580-exon-sc0000030-1510915933:845486..845614Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:845486..845614TCONS_00003580-exon-sc0000030-1575043694:845486..845614Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1491911889:845836..846365TCONS_00003580-exon-sc0000030-1491911889:845836..846365Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1510915933:845836..846365TCONS_00003580-exon-sc0000030-1510915933:845836..846365Clytia hemisphaericaexon
TCONS_00003580-exon-sc0000030-1575043694:845836..846365TCONS_00003580-exon-sc0000030-1575043694:845836..846365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:841144..846365 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145999	0.135622	0.0662655	0	0.508157	0.555159	0.922539	0.968224	0.450528	0.655326	0.813436	0.46097	0.77293	0.57427	0.661287	0.568401	0	0.190715	0.641407	0.000553439	0.0784899	0.34189	0.311549	0.277069	0.736017	0.783575	0.462119	0.221245	0.00939638	0.749429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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