TCONS_00003638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003638
Unique NameTCONS_00003638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003638 ID=TCONS_00003638|Name=TCONS_00003638|organism=Clytia hemisphaerica|type=transcript|length=583bp
CAGTGGTGAATCTGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCC
AATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCG
GATGATAAGACGCAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCC
CATCCTTGAAGCGTTCGGTAATGCCAAAACTGTCAAGAATGATAACTCGT
CCCGTTTCGGTAAATTCATCCGTGTTATGTTCGATAACTCTGGATTCATT
TGTGGAGCTAACATCGAATCATACTTGTTGGAGAAAGCTCGTCTCATTCG
TCAAGCACCTGATGAAAGAATTTTCCACATCTTCTATCAATTGTGCTTGG
GAGCTAGCGATGATGTCAAAAaacaatttttgTTGCAAGATCCAAAAGAT
TACAATTTCATTTCTAACGGTAACGTATCCCTTGCCAATATGGATGATCG
CGTTGAATTTAAATTAACTTTGGAAGCTATGCGAGACATGGGTATGACCC
AAGAAGAACTTGATCCAATTTTCAAGGTAAAGTtcaataattcatgatat
gcaccactgcaatgtcttctgacattacaccAC
Run BLAST on NCBI

protein sequence of TCONS_00003638-protein

>TCONS_00003638-protein ID=TCONS_00003638-protein|Name=TCONS_00003638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
SGESGAGKTENTKKVIQYLTSVAGRSSAGPVDADDKTQGKLENQLLQANP
ILEAFGNAKTVKNDNSSRFGKFIRVMFDNSGFICGANIESYLLEKARLIR
QAPDERIFHIFYQLCLGASDDVKKQFLLQDPKDYNFISNGNVSLANMDDR
VEFKLTLEAMRDMGMTQEELDPIFKVKFNNS
Run BLAST on NCBI

transcript from alignment at sc0000030:461623..463218-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003638 ID=TCONS_00003638|Name=TCONS_00003638|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at sc0000030:461623..463218- (Clytia hemisphaerica)
CAGTGGTGAATCTGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCC
AATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCG
GATGATAAGACGCAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCC
CATCCTTGAAGCGTTCGGTAATGCCAAAACTGTCAAGAATGATAACTCGT
CCCGTTTCGTAAGTGCCTTGTAATCTATTATCACTTTTGTTAAAGATCTG
CAGGGTGTTATAGTATTTGAACAATAATCTTAGTGAAGTTATGCTTCGGA
AACGTATAATTTGGTTTTCATGTGCGAACTGTTAATTTTTATTTGGGAAT
AGGGTCATTAAATATTACTGAGATAAATTTTAAATTGTAATTCAAACTTT
GATTTTCGACTTGTAGTCATCATTTAAGCCTATTTTCAGTACTAAGCGAT
GCAACTGAGCGTTTTCAGAACATTATTCTGATACAGTAAAGTCTCCATAA
CTCGAACACACACGTGGTAAACGCAAATTTGTTCGAGTTAAGGAAATTTC
GAGTTATGGAGCCTAGTTTATAAGGCATTATTAACTGATGGGACCAGCAA
ACTTGTCCAAGTTATAGAGACATTTGAGTTACAGAAGTTTGAGTAAAAGA
GATTCATTTGTTTTCTTGTACACACAGGGTAAATTCATCCGTGTTATGTT
CGATAACTCTGGATTCATTTGTGGAGCTAACATCGAATCATACTTGTTGG
AGAAAGCTCGTCTCATTCGTCAAGCACCTGATGAAAGAATTTTCCACATC
TTCTATCAATTGTGCTTGGGAGCTAGCGATGATGTCAAAAGTAAGACTGC
GGGGTTTTTACTTATTTGTCAAGAATTTTGCCCCTAGCATATTTAATTAA
AGTGGATATAATCACCCTGAAGAGGACTTCCTACCAGCAAACAAAGCATT
TGAAAAAAACAACTCGCGATAATGTTACTTGCGGAAATTTGATCTACCAT
CCTACTCAGCCACGATTGCCATTCGGAAATACCCATGGGACCCCGGCCCC
AGTGGAAAGTTCCGCAAAATTATCGTCCCCGGTGGGAAAAATCCACCAGG
ATTTCAGCCCCAACTGGAAAAATAACTTTGATTTCATACCCATTCGAAAC
TTAATGTTTAAAAATTGCACTCCAAAACCATCCCCACTGGATTTTCTAAC
CTTGGAACAATAAAATTTCTATCCCTATTGTGATTTCAAAATATAATTTT
TATCCCTGCTGTGGAAAAAGCTCCAGCAGGGCTACAAGACAGGGGTGCAC
GAGTTACACAGGAAATCACTCGGCATGGGACAATCACATTTCTAACTGCA
GTTTGTTCAATAACTTCCTCAATATTTTTTATAGAACAATTTTTGTTGCA
AGATCCAAAAGATTACAATTTCATTTCTAACGGTAACGTATCCCTTGCCA
ATATGGATGATCGCGTTGAATTTAAATTAACTTTGGAAGCTATGCGAGAC
ATGGGTATGACCCAAGAAGAACTTGATCCAATTTTCAAGGTAAAGTTCAA
TAATTCATGATATGCACCACTGCAATGTCTTCTGACATTACACCAC

Coding sequence (CDS) from alignment at sc0000030:461623..463218-

>TCONS_00003638 ID=TCONS_00003638|Name=TCONS_00003638|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000030:461623..463218- (Clytia hemisphaerica)
AACAATTTTTGTTGCAAGATCCAAAAGATTACAATTTCATTTCTAACGGT
AACGTATCCCTTGCCAATATGGATGATCGCGTTGAATTTAAATTAACTTT
GGAAGCTATGCGAGACATGGGTATGACCCAAGAAGAACTTGATCCAATTT
TCAAGGTAAAGTTCAATAATTCATGAGGTAAATTCATCCGTGTTATGTTC
GATAACTCTGGATTCATTTGTGGAGCTAACATCGAATCATACTTGTTGGA
GAAAGCTCGTCTCATTCGTCAAGCACCTGATGAAAGAATTTTCCACATCT
TCTATCAATTGTGCTTGGGAGCTAGCGATGATGTCAAAAAGTGGTGAATC
TGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCCAATATTTGACCT
CTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCGGATGATAAGACG
CAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCCCATCCTTGAAGC
GTTCGGTAATGCCAAAACTGTCAAGAATGATAACTCGTCCCGTTTCAACA
ATTTTTGTTGCAAGATCCAAAAGATTACAATTTCATTTCTAACGGTAACG
TATCCCTTGCCAATATGGATGATCGCGTTGAATTTAAATTAACTTTGGAA
GCTATGCGAGACATGGGTATGACCCAAGAAGAACTTGATCCAATTTTCAA
GGTAAAGTTCAATAATTCATGAGGTAAATTCATCCGTGTTATGTTCGATA
ACTCTGGATTCATTTGTGGAGCTAACATCGAATCATACTTGTTGGAGAAA
GCTCGTCTCATTCGTCAAGCACCTGATGAAAGAATTTTCCACATCTTCTA
TCAATTGTGCTTGGGAGCTAGCGATGATGTCAAAAAGTGGTGAATCTGGT
GCTGGAAAGACAGAGAACACCAAGAAAGTCATCCAATATTTGACCTCTGT
TGCTGGACGATCCAGCGCTGGTCCTGTAGATGCGGATGATAAGACGCAAG
GAAAATTGGAGAATCAATTATTGCAAGCTAACCCCATCCTTGAAGCGTTC
GGTAATGCCAAAACTGTCAAGAATGATAACTCGTCCCGTTTCAACAATTT
TTGTTGCAAGATCCAAAAGATTACAATTTCATTTCTAACGGTAACGTATC
CCTTGCCAATATGGATGATCGCGTTGAATTTAAATTAACTTTGGAAGCTA
TGCGAGACATGGGTATGACCCAAGAAGAACTTGATCCAATTTTCAAGGTA
AAGTTCAATAATTCATGAGGTAAATTCATCCGTGTTATGTTCGATAACTC
TGGATTCATTTGTGGAGCTAACATCGAATCATACTTGTTGGAGAAAGCTC
GTCTCATTCGTCAAGCACCTGATGAAAGAATTTTCCACATCTTCTATCAA
TTGTGCTTGGGAGCTAGCGATGATGTCAAAAAGTGGTGAATCTGGTGCTG
GAAAGACAGAGAACACCAAGAAAGTCATCCAATATTTGACCTCTGTTGCT
GGACGATCCAGCGCTGGTCCTGTAGATGCGGATGATAAGACGCAAGGAAA
ATTGGAGAATCAATTATTGCAAGCTAACCCCATCCTTGAAGCGTTCGGTA
ATGCCAAAACTGTCAAGAATGATAACTCGTCCCGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002020XLOC_002020Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003638-proteinTCONS_00003638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003638-exon-sc0000030-1575043694:463011..463218TCONS_00003638-exon-sc0000030-1575043694:463011..463218Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1575043694:462379..462541TCONS_00003638-exon-sc0000030-1575043694:462379..462541Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1575043694:461623..461834TCONS_00003638-exon-sc0000030-1575043694:461623..461834Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1510915933:463011..463218TCONS_00003638-exon-sc0000030-1510915933:463011..463218Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1510915933:462379..462541TCONS_00003638-exon-sc0000030-1510915933:462379..462541Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1510915933:461623..461834TCONS_00003638-exon-sc0000030-1510915933:461623..461834Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1491911889:463011..463218TCONS_00003638-exon-sc0000030-1491911889:463011..463218Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1491911889:462379..462541TCONS_00003638-exon-sc0000030-1491911889:462379..462541Clytia hemisphaericaexon
TCONS_00003638-exon-sc0000030-1491911889:461623..461834TCONS_00003638-exon-sc0000030-1491911889:461623..461834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:461623..463218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0928069	0	0	0	0.203083	0	0	0	0	0	0	212.078	221.496	0	0.174062	0.142647	0.0767917	289.53	229.998	0.159397	0	0	0	0.528247	0.281807	0	0	0.105751	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001609Myosin_head_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003774motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016459 myosin complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0003774 motor activity
Blast
[Close]
BLAST of TCONS_00003638 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3)

HSP 1 Score: 210.305 bits (534), Expect = 1.090e-61
Identity = 106/176 (60.23%), Postives = 129/176 (73.30%), Query Frame = 2 
Query:    2 SGESGAGKTENTKKVIQYLTSVAGRSSAGPVDADDKTQGKLENQLLQANPILEAFGNAKTVKNDNSSRFGKFIRVMFDNSGFICGANIESYLLEKARLIRQAPDERIFHIFYQLCLGASDDVKKQFLLQDPKDYNFISNGNVSLANMDDRVEFKLTLEAMRDMGMTQEELDPIFKV 529
            +GESGAGKTENTKKVIQYL  VA  S  G  D +    G+LE QLLQANPILE+FGNAKTVKNDNSSRFGKFIR+ FD +G+I GANIE+YLLEK+R +RQA DER FHIFYQL  GA + +K   LL+   +Y F+SNG + +    D+  F+ T+EAM  MG + EE+  + KV
Sbjct:  177 TGESGAGKTENTKKVIQYLAHVAS-SHKGRKDHN--IPGELERQLLQANPILESFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAVRQAKDERTFHIFYQLLSGAGEHLKSDLLLEGFNNYRFLSNGYIPIPGQQDKDNFQETMEAMHIMGFSHEEILSMLKV 349
The following BLAST results are available for this feature:
BLAST of TCONS_00003638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYH101.090e-6160.23Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3[more]
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