TCONS_00003661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003661
Unique NameTCONS_00003661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003661 ID=TCONS_00003661|Name=TCONS_00003661|organism=Clytia hemisphaerica|type=transcript|length=708bp
TTTAGATTAATTTCAATTACAAGGAGAAAATTTGCTAAGACCAGAACTCa
agaaaaaatggtcaaatatAGTACTCTCTTCACCAGCTTAATTTTGCTGA
CGTTACAAAATGGCTCATCTGTGGCATCTATCTTGTTCAATGACAACATG
AGGAGTTTTTCACATGCACAAAAAGAAGGGAAATGCATtgcaaacaaaga
attaacaTTATTTGAAAGAGCAGGTGAGCCTGGAGTCATCACAGAACAAT
GGTTTACAAGTGAGAACGACTGCTTTGCTGCTGATTCCATTATAAGgtat
TACATCGATAATGGTACAGTGCCTGCAATAGAAGGCTCCCTTTTTCTGAT
GCATGGCATAGGATGGGATAATGGTGCAAAAGCTGGACCCTGGGGCAACA
AATGGGTCGGACAACTGGCCCAAAACGGTGGCTTGTACAATACAATCAGA
ATCCCGTACGGAAAATCTATTCGGGTAACCGTCACACCGCCTCGGTCCGG
AGTTTATTGGTTTATCTTAAGAGGGGTTGAAAATTACGGTGTTGTAGTTG
GAGATTTAGCTTTGCCGCCCACCGCCCGACTGAGATTACAAAAGATAGAG
AATAAGCAATTTGACGTTTATGAGTATATTGATTTGGCGCGTTCGATTAA
AGAGAATGGCTTGCTTTTTATGGTCACCTTGGCTGCTAATAGTACGGACT
TCAATTAC
Run BLAST on NCBI

protein sequence of TCONS_00003661-protein

>TCONS_00003661-protein ID=TCONS_00003661-protein|Name=TCONS_00003661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
FRLISITRRKFAKTRTQEKMVKYSTLFTSLILLTLQNGSSVASILFNDNM
RSFSHAQKEGKCIANKELTLFERAGEPGVITEQWFTSENDCFAADSIIRY
YIDNGTVPAIEGSLFLMHGIGWDNGAKAGPWGNKWVGQLAQNGGLYNTIR
IPYGKSIRVTVTPPRSGVYWFILRGVENYGVVVGDLALPPTARLRLQKIE
NKQFDVYEYIDLARSIKENGLLFMVTLAANSTDFNY
Run BLAST on NCBI

transcript from alignment at sc0000030:593795..596038-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003661 ID=TCONS_00003661|Name=TCONS_00003661|organism=Clytia hemisphaerica|type=transcript|length=2244bp|location=Sequence derived from alignment at sc0000030:593795..596038- (Clytia hemisphaerica)
TTTAGATTAATTTCAATTACAAGGAGAAAATTTGCTAAGACCAGAACTCA
AGAAAAAATGGTCAAATATAGTACTCTCTTCACCAGCTTAATTTTGCTGA
CGTTACAAAATGGCTCATCTGTGGCATCTATCTTGTTCAATGACAACATG
AGGAGTTTTTCACATGCACAAAAAGAAGGGAAATGCATTGCAAACAAAGA
ATTAACATTATTTGAAAGAGCAGGTACAAGTTATAAAAATTCATATATTA
ATTATAAATTTATACATTTTTTGTCTCTCAAATGCATTCATTAGTCTAAC
TAAAATTCTATCACCAAAGATTTAGTCTCTAACGGTCGGTTTTCGGAGGC
CCTGTCCGCACACACCCCTCATCTCATCATCCAACCTTAATAAAAGTATT
TCAAAATTTTTCACATTGTAGAACACCAGGCGGTTACTAGGGTTGGCGGA
TGATATGGCGATATTCCTTATAACGTTTTCTTCTTCATTTTAAACTTATT
CGATGGTTTCAAAACGCAGTTTTGTATAAGAACTCTTTCAGAATCACAAG
GCTCGAATTTCCAAAATAAAAAATTACAAATTTTTAAGAATAAAGTGATA
CTGAGCCTCGAATCTTTGTAAAAAATATTTTTCTTGTTATTACATTCTTT
AATAAGACAAACTAACTAACAGACTAATCTTTAAATGGAATATTATTTCT
TAGGGTCAGATTGTTTTTAGGTGAGCCTGGAGTCATCACAGAACAATGGT
TTACAAGTGAGAACGACTGCTTTGCTGCTGATTCCATTATAAGGTAAAAA
GAATGTTTCAAATCTTACTGAAATACAGTTCACGCTCTCTGATTCGACGT
TCTACTATTCGATACGCTCCATTATTCGATAAATATTGGAAGTCCCTGTC
AACAAGAAACTCTTGTAAACGGCGCTCTACTATTCGATACGTTCCCTTAT
TCGATGAAAATCAGATTCATCTCAAATCAACTCTCTAATTCCATTTGTAT
GGGGAGTTGAATTTTCATCGAATAAGGGAGCGTATCAAATGATGTTCCTC
TTGTTTTTGAGCGTTTCTTGGTGATAGTAGCTTTCAATACAGTTGACGCT
CTCTAATTCGACGCTTTACTATTCGTACTCCCTTATTCGATGAAAATCCA
ATTCCCCTTAAAGATCGAATTAGAGAGCGTCAACTGTATTATCGAATGAT
GGAGTGTATCGAGTATGAAGAACTTTGAATTAGAGAGCATCAGCTTGTAT
TATTGCTTTTTGTTTTGCAGAAAACATTGAAATGACAATGTGCTTTGCTT
ACTATTGTGTACTTACTGAACAATTTGGCGATTGGTAGAGACGCTGAGAA
AATTTAACTTGATAAAGATGAAGTTTACTAGGTTTTAGTGGTGTAGTAAG
GCGAAAACGTAAACAAAACTCAAACAACTTCGTTTTCTTGTTACATTACA
CAGCAAAATAATTTGAACTTTCAGAGAGTTGTGCAATACTACAATCATGG
ACAAAAATATTTGAGACAAAGGGGACTTCCCTGCGAAATTTTAAATACCA
CAAATGATTTTTTAGCGCCTTAAACTACAATTGGAAAGTAGAGTTTTAAC
TCTGAGTTTTAACATGCGACTTAAGATAAAGGACCTTAGGATCTCAGGAT
TTAAAAGCTCAAACTTGTTTAAATAAGGCTTGGAATCAACCACCGAATCT
CTCTAAAATCGAAATATTCATTGAAAGAAAGTGCAATTCTTGCCCGAACT
TTAAATTCTGAAAAACGTTAAAATACACTAAAATGTCAATATATTTCTCG
ACCATAATTATACATAGAATTTTATTTTTCAGGTATTACATCGATAATGG
TACAGTGCCTGCAATAGAAGGCTCCCTTTTTCTGATGCATGGCATAGGAT
GGGATAATGGTGCAAAAGCTGGACCCTGGGGCAACAAATGGGTCGGACAA
CTGGCCCAAAACGGTGGCTTGTACAATACAATCAGAATCCCGTACGGAAA
ATCTATTCGGGTAACCGTCACACCGCCTCGGTCCGGAGTTTATTGGTTTA
TCTTAAGAGGGGTTGAAAATTACGGTGTTGTAGTTGGAGATTTAGCTTTG
CCGCCCACCGCCCGACTGAGATTACAAAAGATAGAGAATAAGCAATTTGA
CGTTTATGAGTATATTGATTTGGCGCGTTCGATTAAAGAGAATGGCTTGC
TTTTTATGGTCACCTTGGCTGCTAATAGTACGGACTTCAATTAC

Coding sequence (CDS) from alignment at sc0000030:593795..596038-

>TCONS_00003661 ID=TCONS_00003661|Name=TCONS_00003661|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000030:593795..596038- (Clytia hemisphaerica)
GTATTACATCGATAATGGTACAGTGCCTGCAATAGAAGGCTCCCTTTTTC
TGATGCATGGCATAGGATGGGATAATGGTGCAAAAGCTGGACCCTGGGGC
AACAAATGGGTCGGACAACTGGCCCAAAACGGTGGCTTGTACAATACAAT
CAGAATCCCGTACGGAAAATCTATTCGGGTAACCGTCACACCGCCTCGGT
CCGGAGTTTATTGGTTTATCTTAAGAGGGGTTGAAAATTACGGTGTTGTA
GTTGGAGATTTAGCTTTGCCGCCCACCGCCCGACTGAGATTACAAAAGAT
AGAGAATAAGCAATTTGACGTTTATGAGTATATTGATTTGGCGCGTTCGA
TTAAAGAGAATGGCTTGCTTTTTATGGTCACCTTGGCTGCTAATAGTACG
GACTTCAATTACGTGAGCCTGGAGTCATCACAGAACAATGGTTTACAAGT
GAGAACGACTGCTTTGCTGCTGATTCCATTATAAGTTTAGATTAATTTCA
ATTACAAGGAGAAAATTTGCTAAGACCAGAACTCAAGAAAAAATGGTCAA
ATATAGTACTCTCTTCACCAGCTTAATTTTGCTGACGTTACAAAATGGCT
CATCTGTGGCATCTATCTTGTTCAATGACAACATGAGGAGTTTTTCACAT
GCACAAAAAGAAGGGAAATGCATTGCAAACAAAGAATTAACATTATTTGA
AAGAGCAGGTATTACATCGATAATGGTACAGTGCCTGCAATAGAAGGCTC
CCTTTTTCTGATGCATGGCATAGGATGGGATAATGGTGCAAAAGCTGGAC
CCTGGGGCAACAAATGGGTCGGACAACTGGCCCAAAACGGTGGCTTGTAC
AATACAATCAGAATCCCGTACGGAAAATCTATTCGGGTAACCGTCACACC
GCCTCGGTCCGGAGTTTATTGGTTTATCTTAAGAGGGGTTGAAAATTACG
GTGTTGTAGTTGGAGATTTAGCTTTGCCGCCCACCGCCCGACTGAGATTA
CAAAAGATAGAGAATAAGCAATTTGACGTTTATGAGTATATTGATTTGGC
GCGTTCGATTAAAGAGAATGGCTTGCTTTTTATGGTCACCTTGGCTGCTA
ATAGTACGGACTTCAATTACGTGAGCCTGGAGTCATCACAGAACAATGGT
TTACAAGTGAGAACGACTGCTTTGCTGCTGATTCCATTATAAGTTTAGAT
TAATTTCAATTACAAGGAGAAAATTTGCTAAGACCAGAACTCAAGAAAAA
ATGGTCAAATATAGTACTCTCTTCACCAGCTTAATTTTGCTGACGTTACA
AAATGGCTCATCTGTGGCATCTATCTTGTTCAATGACAACATGAGGAGTT
TTTCACATGCACAAAAAGAAGGGAAATGCATTGCAAACAAAGAATTAACA
TTATTTGAAAGAGCAGGTATTACATCGATAATGGTACAGTGCCTGCAATA
GAAGGCTCCCTTTTTCTGATGCATGGCATAGGATGGGATAATGGTGCAAA
AGCTGGACCCTGGGGCAACAAATGGGTCGGACAACTGGCCCAAAACGGTG
GCTTGTACAATACAATCAGAATCCCGTACGGAAAATCTATTCGGGTAACC
GTCACACCGCCTCGGTCCGGAGTTTATTGGTTTATCTTAAGAGGGGTTGA
AAATTACGGTGTTGTAGTTGGAGATTTAGCTTTGCCGCCCACCGCCCGAC
TGAGATTACAAAAGATAGAGAATAAGCAATTTGACGTTTATGAGTATATT
GATTTGGCGCGTTCGATTAAAGAGAATGGCTTGCTTTTTATGGTCACCTT
GGCTGCTAATAGTACGGACTTCAATTACGTGAGCCTGGAGTCATCACAGA
ACAATGGTTTACAAGTGAGAACGACTGCTTTGCTGCTGATTCCATTATAA
GTTTAGATTAATTTCAATTACAAGGAGAAAATTTGCTAAGACCAGAACTC
AAGAAAAAATGGTCAAATATAGTACTCTCTTCACCAGCTTAATTTTGCTG
ACGTTACAAAATGGCTCATCTGTGGCATCTATCTTGTTCAATGACAACAT
GAGGAGTTTTTCACATGCACAAAAAGAAGGGAAATGCATTGCAAACAAAG
AATTAACATTATTTGAAAGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002028XLOC_002028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003661-proteinTCONS_00003661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003661-exon-sc0000030-1575043694:595816..596038TCONS_00003661-exon-sc0000030-1575043694:595816..596038Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1575043694:595246..595318TCONS_00003661-exon-sc0000030-1575043694:595246..595318Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1575043694:593795..594206TCONS_00003661-exon-sc0000030-1575043694:593795..594206Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1510915933:595816..596038TCONS_00003661-exon-sc0000030-1510915933:595816..596038Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1510915933:595246..595318TCONS_00003661-exon-sc0000030-1510915933:595246..595318Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1510915933:593795..594206TCONS_00003661-exon-sc0000030-1510915933:593795..594206Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1491911889:595816..596038TCONS_00003661-exon-sc0000030-1491911889:595816..596038Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1491911889:595246..595318TCONS_00003661-exon-sc0000030-1491911889:595246..595318Clytia hemisphaericaexon
TCONS_00003661-exon-sc0000030-1491911889:593795..594206TCONS_00003661-exon-sc0000030-1491911889:593795..594206Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:593795..596038 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.753991	0.482248	0	0	0	0.642246	1.45301	0	1.55773	0	1.58639	2.79369	0.134066	1.67834	7.46115	8.94296	4.00296	4.12176	4.15681	3.00532	2.96577	4.82826	4.36579	2.89012	0	0	2.53471	0.881952	5.08122	7.55758
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021345DUF2961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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