TCONS_00003664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003664
Unique NameTCONS_00003664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003664 ID=TCONS_00003664|Name=TCONS_00003664|organism=Clytia hemisphaerica|type=transcript|length=310bp
agcggctagacgaaaaaaaaggtgaatttccatttttagtgcccgcatat
cattgaaattttgtaaattttgcttacgcgcatgcgtttgccaaaagagt
cgcactccgctcgctaacgctcgctccgtgcgtaatgATACCGCTGATAA
GGAAAAACTGCTGATAACTAACTTTAATGTATTATACTCTTCACCTTTAT
TCAGCTGAAGCAAATAAAAGCCTATCGGAGGATCTAGAAGATAGTGAAAA
GCTTGACAGGTTGAAAAAATGGATACGAGAATTGCACACAGGACTGGACA
CTAATGATGA
Run BLAST on NCBI

transcript from alignment at sc0000030:669166..669475-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003664 ID=TCONS_00003664|Name=TCONS_00003664|organism=Clytia hemisphaerica|type=transcript|length=310bp|location=Sequence derived from alignment at sc0000030:669166..669475- (Clytia hemisphaerica)
AGCGGCTAGACGAAAAAAAAGGTGAATTTCCATTTTTAGTGCCCGCATAT
CATTGAAATTTTGTAAATTTTGCTTACGCGCATGCGTTTGCCAAAAGAGT
CGCACTCCGCTCGCTAACGCTCGCTCCGTGCGTAATGATACCGCTGATAA
GGAAAAACTGCTGATAACTAACTTTAATGTATTATACTCTTCACCTTTAT
TCAGCTGAAGCAAATAAAAGCCTATCGGAGGATCTAGAAGATAGTGAAAA
GCTTGACAGGTTGAAAAAATGGATACGAGAATTGCACACAGGACTGGACA
CTAATGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002030XLOC_002030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003664-exon-sc0000030-1575043694:669166..669475TCONS_00003664-exon-sc0000030-1575043694:669166..669475Clytia hemisphaericaexon
TCONS_00003664-exon-sc0000030-1510915933:669166..669475TCONS_00003664-exon-sc0000030-1510915933:669166..669475Clytia hemisphaericaexon
TCONS_00003664-exon-sc0000030-1491911889:669166..669475TCONS_00003664-exon-sc0000030-1491911889:669166..669475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:669166..669475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.42947	0.672684	2.77133	2.39872	2.79015	1.92995	4.43012	6.56254	0.628665	4.092	1.6546	0.896428	2.06048	3.99979	1.5475	1.21672	2.60146	1.32256	0.246249	0	0.702741	1.6841	0.805158	1.69135	23.5491	7.98934	1.37759	0	0.412539	0.430881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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