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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003721 ID=TCONS_00003721|Name=TCONS_00003721|organism=Clytia hemisphaerica|type=transcript|length=1424bp
AACAATaacaaaacgcttaaaaaacttcATTCGTgagttttttttacata
aaagtTTATTAAACCTGTACAAATGTTCAGTTAAAGAATTTTCATATTGA
AAAGCACTATGGACGACGGTAAAACAGGCAAAGGTTTCGTCAAAAGACAT
GGCAAGCTTCTAAAAGGACTGTTATTCACAAGTTTGGGGATTGTCATTAT
AATGCTTATAATTACATTAACAATATGGGTTATACTGCCTTCCTTTCTAA
CCTCTGAAAAAACTGGAGTAAGCCCAAACAAGACTATTTGTTTTTACGCT
AACTGGGCACAATACCGAAAGAACGAAGGTAGATTTTTACCGGAGAATAT
TGATCCGTCATTATGCACGCATATAACATACGCACATTTGAAAGTTGATC
TGAACACTCACGCCCTGGTACAGAGACAACCAAATGATGATTTACTGCTG
GCCCAAATTGTGGCACTGAAAGAAGTCAACCCTGAGCTGAAAGTTATCAT
TTCTGTTGGTGGATGGAATCATGAGAAAGAACCACGATTTTCGAATATGG
TACGAAATCAAACAACTAGAggaatttttattcaatcttcCATATCATAC
ATTCTTCAACATCGGTTAGATGGGATTTCTATTGATTGGGAATATCCGAC
ACATAGAGGAACTTCAGGACCGGAAGATAAACATAGGTACACACTTCTAC
TAAGAGAATTCCGGGAAGCTTTCACACTGCAGCAACTCCCTTTCACACTC
TCAGCTTCGGTGTCCGCCGGCAGAAGAGTTATATCTAGTGCGTATGAAAT
TCCTGAGATTGAACAGTACGTCCATTGGGTTAACATCATGGCGTACGCCC
TACATGGGGCGTGGGAGGACGAAACAGGCCACCATACTGCGATGACCGGT
GGCCTACCAAACGTACCAGACAGTATTGAAGCTTGGAGAGAACTTGGTAT
GCCAGATGATAAAATCAATGTTGGAGTTGCTACATATGGAAGAACATATA
AACTACTTTTCAAAGAAGAATTCGATATAGGAGGTCCAGTACTTGGTGCT
GGAAACGCTGGAACATACACCAAAGGAGCTGGCATTTTGTCTTACTATGA
GATATGTGCTCTGAACTGGACCCATAGGACGCCGTATTGGGAGAGTGTTG
CTGGGAAGCCTTACGCTTCAGACAAAGACCAATGGGTCGGTTATGAAACA
CCTGAGAGTATTGCATCTGAAATCCGGACACTTTTCTCGGACAGATGTTA
TCATGGTATAGCTGTCTGGAATTTAGGCTATGATGATTTTAATGGAACAT
TCTGTGGACAAGGAAAATTTCCTCTTTTGAAATCAGCCGTAAAAACGTTG
CATGAAAGTCGGAGTTGTAAAGTGACTCAATCTAATGCGTCTGTGCCTTA
AAGAGCGAGGGGTAGAGATACGGT Run BLAST on NCBI protein sequence of TCONS_00003721-protein >TCONS_00003721-protein ID=TCONS_00003721-protein|Name=TCONS_00003721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MDDGKTGKGFVKRHGKLLKGLLFTSLGIVIIMLIITLTIWVILPSFLTSE
KTGVSPNKTICFYANWAQYRKNEGRFLPENIDPSLCTHITYAHLKVDLNT
HALVQRQPNDDLLLAQIVALKEVNPELKVIISVGGWNHEKEPRFSNMVRN
QTTRGIFIQSSISYILQHRLDGISIDWEYPTHRGTSGPEDKHRYTLLLRE
FREAFTLQQLPFTLSASVSAGRRVISSAYEIPEIEQYVHWVNIMAYALHG
AWEDETGHHTAMTGGLPNVPDSIEAWRELGMPDDKINVGVATYGRTYKLL
FKEEFDIGGPVLGAGNAGTYTKGAGILSYYEICALNWTHRTPYWESVAGK
PYASDKDQWVGYETPESIASEIRTLFSDRCYHGIAVWNLGYDDFNGTFCG
QGKFPLLKSAVKTLHESRSCKVTQSNASVP Run BLAST on NCBI transcript from alignment at sc0000031:69146..71796+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003721 ID=TCONS_00003721|Name=TCONS_00003721|organism=Clytia hemisphaerica|type=transcript|length=2651bp|location=Sequence derived from alignment at sc0000031:69146..71796+ (Clytia hemisphaerica)
AACAATaacaaaacgcttaaaaaacttcATTCGTgagttttttttacata
aaagtTTATTAAACCTGTACAAATGTTCAGTTAAAGAATTTTCATATTGA
AAAGCACTATGGACGACGGTAAAACAGGCAAAGGTTTCGTCAAAAGACAT
GGCAAGCTTCTAAAAGGACTGTTATTCACAAGTTTGGGGATTGTCATTAT
AATGCTTATAATTACATTAACAATATGGGTTATACTGCCTTCCTTTCTAA
CCTCTGAAAAAACTGGAGTAAGCCCAAACAAGACTATTTGTTTTTACGCT
AACTGGGCACAATACCGAAAGAACGAAGGTAGATTTTTACCGGAGAATAT
TGATCCGTCATTATGCACGCATATAACATACGCACATTTGAAAGTTGATC
TGAACACTCACGCCCTGGTACAGAGACAACCAAATGATGATTTACTGCTG
GCCCAAATTGTGGCACTGAAAGAAGTCAACCCTGAGCTGAAAGTTATCAT
TTCTGTTGGTAAGCAAatattttttggacaaattttttGGCGTTTATAAG
CTACTTTCCTGTTCAATGAAGAAAATAACGGTAAAGTTAACTTaatctaa
ttcgatcttcaaaggaTTTAGAATTATCTTCGAATTACGGTATTTTATTT
CACTTTCCAATTAAGTGAACCAAtgatttagttcgaattacagaaacatt
cgaattaacagagagttaactgtatttttgaaaataattaaaggATAACA
AGAGTTTCAGATTTGACGTTTTCTGTGGGCAACCTTCGTAGTCCTTCTCA
CATTGTATTTGTGTCTTATTGAGTAATAACCTTTTGAACCAGCATTCTAA
ATGGGTCTAGATATCTATACAATATATTCTTTGTCTAAATTGCTCCCAAA
AAAGCTAACAAttctttttcttgttgttttgaCCATACCTAACACTGACT
CGTAGACGTcccaaaagaaaagtttttttgaatctGGAATGATAACTTAG
CAATCTAAAAGTTTATCTAATACTTCAATTGCGGATTGATGATCGCCCAC
GCTAAAATGAGCGAGCCAATTTCCCATTGGAGAGTAATGATAATCTGCAA
GTTGTACTgtctcttcagttaacaatgcctaaTATCAATATTACTCCAtt
actcgaaatttccataTCTTGAACAAATGTGTGCTTCTCGTACTGGTGCG
AGTTATGAAAATCCAActgtttcttgatttttaagGTGGATGGAATCATG
AGAAAGAACCACGATTTTCGAATATGGTACGAAATCAAACAACTAGAgga
atttttattcaatcttcCATATCATACATTCTTCAACATCGGTTAGATGG
GATTTCTATTGATTGGGAATATCCGACACATAGAGGAACTTCAGGACCGG
AAGATAAACATAGGTAACCTTTTGgaacacaacattgtttcaacattTAT
CTAACgctaaatggacgttgtgaacattaaatgaacgttgaaacaaagtT
ATTTGCCAGCTGAGATAGCCCTGTCCCAACTGGGATACAACGCTGTTTTA
AGCATCAAAACGAACCCGTCTTAGTTACCAAGTGGGAATCtgtcaaatga
aaaataagaaagGCATAAAAATATATAGATCCAAAGTGACCTAAATAACT
CGCAAGGGGTgcaaagaaacattttttaaattatgcAAGCTTCCCAATTA
TAGAGGTTCAAGCAGCAGACATTCGAATTGCGGGGTATAAAATAACATGG
TAAAGAACAGCGATGGGAATTTACAATTGCTTGTGGTTTGGACGGGCTGT
TGATATTTTAAATCATACTGTTTAAGTTCAAAATCGGTGCGAATGTTCGA
AAGCATGAAATTTAGTCAAAAAGCAATGTATTGAAGGCTTTATTATGATT
CCTTTATTATCAGGTACACACTTCTACTAAGAGAATTCCGGGAAGCTTTC
ACACTGCAGCAACTCCCTTTCACACTCTCAGCTTCGGTGTCCGCCGGCAG
AAGAGTTATATCTAGTGCGTATGAAATTCCTGAGATTGAACAGTACGTCC
ATTGGGTTAACATCATGGCGTACGCCCTACATGGGGCGTGGGAGGACGAA
ACAGGCCACCATACTGCGATGACCGGTGGCCTACCAAACGTACCAGACAG
TATTGAAGCTTGGAGAGAACTTGGTATGCCAGATGATAAAATCAATGTTG
GAGTTGCTACATATGGAAGAACATATAAACTACTTTTCAAAGAAGAATTC
GATATAGGAGGTCCAGTACTTGGTGCTGGAAACGCTGGAACATACACCAA
AGGAGCTGGCATTTTGTCTTACTATGAGATATGTGCTCTGAACTGGACCC
ATAGGACGCCGTATTGGGAGAGTGTTGCTGGGAAGCCTTACGCTTCAGAC
AAAGACCAATGGGTCGGTTATGAAACACCTGAGAGTATTGCATCTGAAAT
CCGGACACTTTTCTCGGACAGATGTTATCATGGTATAGCTGTCTGGAATT
TAGGCTATGATGATTTTAATGGAACATTCTGTGGACAAGGAAAATTTCCT
CTTTTGAAATCAGCCGTAAAAACGTTGCATGAAAGTCGGAGTTGTAAAGT
GACTCAATCTAATGCGTCTGTGCCTTAAAGAGCGAGGGGTAGAGATACGG
T Coding sequence (CDS) from alignment at sc0000031:69146..71796+ >TCONS_00003721 ID=TCONS_00003721|Name=TCONS_00003721|organism=Clytia hemisphaerica|type=CDS|length=3879bp|location=Sequence derived from alignment at sc0000031:69146..71796+ (Clytia hemisphaerica)
ATGGACGACGGTAAAACAGGCAAAGGTTTCGTCAAAAGACATGGCAAGCT
TCTAAAAGGACTGTTATTCACAAGTTTGGGGATTGTCATTATAATGCTTA
TAATTACATTAACAATATGGGTTATACTGCCTTCCTTTCTAACCTCTGAA
AAAACTGGAGTAAGCCCAAACAAGACTATTTGTTTTTACGCTAACTGGGC
ACAATACCGAAAGAACGAAGGTAGATTTTTACCGGAGAATATTGATCCGT
CATTATGCACGCATATAACATACGCACATTTGAAAGTTGATCTGAACACT
CACGCCCTGGTACAGAGACAACCAAATGATGATTTACTGCTGGCCCAAAT
TGTGGCACTGAAAGAAGTCAACCCTGAGCTGAAAGTTATCATTTCTGTTG
GTGGATGGAATCATGAGAAAGAACCACGATTTTCGAATATGGTACGAAAT
CAAACAACTAGAggaatttttattcaatcttcCATATCATACATTCTTCA
ACATCGGTTAGATGGGATTTCTATTGATTGGGAATATCCGACACATAGAG
GAACTTCAGGACCGGAAGATAAACATAGGTACACACTTCTACTAAGAGAA
TTCCGGGAAGCTTTCACACTGCAGCAACTCCCTTTCACACTCTCAGCTTC
GGTGTCCGCCGGCAGAAGAGTTATATCTAGTGCGTATGAAATTCCTGAGA
TTGAACAGTACGTCCATTGGGTTAACATCATGGCGTACGCCCTACATGGG
GCGTGGGAGGACGAAACAGGCCACCATACTGCGATGACCGGTGGCCTACC
AAACGTACCAGACAGTATTGAAGCTTGGAGAGAACTTGGTATGCCAGATG
ATAAAATCAATGTTGGAGTTGCTACATATGGAAGAACATATAAACTACTT
TTCAAAGAAGAATTCGATATAGGAGGTCCAGTACTTGGTGCTGGAAACGC
TGGAACATACACCAAAGGAGCTGGCATTTTGTCTTACTATGAGATATGTG
CTCTGAACTGGACCCATAGGACGCCGTATTGGGAGAGTGTTGCTGGGAAG
CCTTACGCTTCAGACAAAGACCAATGGGTCGGTTATGAAACACCTGAGAG
TATTGCATCTGAAATCCGGACACTTTTCTCGGACAGATGTTATCATGGTA
TAGCTGTCTGGAATTTAGGCTATGATGATTTTAATGGAACATTCTGTGGA
CAAGGAAAATTTCCTCTTTTGAAATCAGCCGTAAAAACGTTGCATGAAAG
TCGGAGTTGTAAAGTGACTCAATCTAATGCGTCTGTGCCTTAAATGGACG
ACGGTAAAACAGGCAAAGGTTTCGTCAAAAGACATGGCAAGCTTCTAAAA
GGACTGTTATTCACAAGTTTGGGGATTGTCATTATAATGCTTATAATTAC
ATTAACAATATGGGTTATACTGCCTTCCTTTCTAACCTCTGAAAAAACTG
GAGTAAGCCCAAACAAGACTATTTGTTTTTACGCTAACTGGGCACAATAC
CGAAAGAACGAAGGTAGATTTTTACCGGAGAATATTGATCCGTCATTATG
CACGCATATAACATACGCACATTTGAAAGTTGATCTGAACACTCACGCCC
TGGTACAGAGACAACCAAATGATGATTTACTGCTGGCCCAAATTGTGGCA
CTGAAAGAAGTCAACCCTGAGCTGAAAGTTATCATTTCTGTTGGTGGATG
GAATCATGAGAAAGAACCACGATTTTCGAATATGGTACGAAATCAAACAA
CTAGAggaatttttattcaatcttcCATATCATACATTCTTCAACATCGG
TTAGATGGGATTTCTATTGATTGGGAATATCCGACACATAGAGGAACTTC
AGGACCGGAAGATAAACATAGGTACACACTTCTACTAAGAGAATTCCGGG
AAGCTTTCACACTGCAGCAACTCCCTTTCACACTCTCAGCTTCGGTGTCC
GCCGGCAGAAGAGTTATATCTAGTGCGTATGAAATTCCTGAGATTGAACA
GTACGTCCATTGGGTTAACATCATGGCGTACGCCCTACATGGGGCGTGGG
AGGACGAAACAGGCCACCATACTGCGATGACCGGTGGCCTACCAAACGTA
CCAGACAGTATTGAAGCTTGGAGAGAACTTGGTATGCCAGATGATAAAAT
CAATGTTGGAGTTGCTACATATGGAAGAACATATAAACTACTTTTCAAAG
AAGAATTCGATATAGGAGGTCCAGTACTTGGTGCTGGAAACGCTGGAACA
TACACCAAAGGAGCTGGCATTTTGTCTTACTATGAGATATGTGCTCTGAA
CTGGACCCATAGGACGCCGTATTGGGAGAGTGTTGCTGGGAAGCCTTACG
CTTCAGACAAAGACCAATGGGTCGGTTATGAAACACCTGAGAGTATTGCA
TCTGAAATCCGGACACTTTTCTCGGACAGATGTTATCATGGTATAGCTGT
CTGGAATTTAGGCTATGATGATTTTAATGGAACATTCTGTGGACAAGGAA
AATTTCCTCTTTTGAAATCAGCCGTAAAAACGTTGCATGAAAGTCGGAGT
TGTAAAGTGACTCAATCTAATGCGTCTGTGCCTTAAATGGACGACGGTAA
AACAGGCAAAGGTTTCGTCAAAAGACATGGCAAGCTTCTAAAAGGACTGT
TATTCACAAGTTTGGGGATTGTCATTATAATGCTTATAATTACATTAACA
ATATGGGTTATACTGCCTTCCTTTCTAACCTCTGAAAAAACTGGAGTAAG
CCCAAACAAGACTATTTGTTTTTACGCTAACTGGGCACAATACCGAAAGA
ACGAAGGTAGATTTTTACCGGAGAATATTGATCCGTCATTATGCACGCAT
ATAACATACGCACATTTGAAAGTTGATCTGAACACTCACGCCCTGGTACA
GAGACAACCAAATGATGATTTACTGCTGGCCCAAATTGTGGCACTGAAAG
AAGTCAACCCTGAGCTGAAAGTTATCATTTCTGTTGGTGGATGGAATCAT
GAGAAAGAACCACGATTTTCGAATATGGTACGAAATCAAACAACTAGAgg
aatttttattcaatcttcCATATCATACATTCTTCAACATCGGTTAGATG
GGATTTCTATTGATTGGGAATATCCGACACATAGAGGAACTTCAGGACCG
GAAGATAAACATAGGTACACACTTCTACTAAGAGAATTCCGGGAAGCTTT
CACACTGCAGCAACTCCCTTTCACACTCTCAGCTTCGGTGTCCGCCGGCA
GAAGAGTTATATCTAGTGCGTATGAAATTCCTGAGATTGAACAGTACGTC
CATTGGGTTAACATCATGGCGTACGCCCTACATGGGGCGTGGGAGGACGA
AACAGGCCACCATACTGCGATGACCGGTGGCCTACCAAACGTACCAGACA
GTATTGAAGCTTGGAGAGAACTTGGTATGCCAGATGATAAAATCAATGTT
GGAGTTGCTACATATGGAAGAACATATAAACTACTTTTCAAAGAAGAATT
CGATATAGGAGGTCCAGTACTTGGTGCTGGAAACGCTGGAACATACACCA
AAGGAGCTGGCATTTTGTCTTACTATGAGATATGTGCTCTGAACTGGACC
CATAGGACGCCGTATTGGGAGAGTGTTGCTGGGAAGCCTTACGCTTCAGA
CAAAGACCAATGGGTCGGTTATGAAACACCTGAGAGTATTGCATCTGAAA
TCCGGACACTTTTCTCGGACAGATGTTATCATGGTATAGCTGTCTGGAAT
TTAGGCTATGATGATTTTAATGGAACATTCTGTGGACAAGGAAAATTTCC
TCTTTTGAAATCAGCCGTAAAAACGTTGCATGAAAGTCGGAGTTGTAAAG
TGACTCAATCTAATGCGTCTGTGCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003721-exon-sc0000031-1491911889:69146..69653 | TCONS_00003721-exon-sc0000031-1491911889:69146..69653 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1510915933:69146..69653 | TCONS_00003721-exon-sc0000031-1510915933:69146..69653 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1575043694:69146..69653 | TCONS_00003721-exon-sc0000031-1575043694:69146..69653 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1491911889:70381..70558 | TCONS_00003721-exon-sc0000031-1491911889:70381..70558 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1510915933:70381..70558 | TCONS_00003721-exon-sc0000031-1510915933:70381..70558 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1575043694:70381..70558 | TCONS_00003721-exon-sc0000031-1575043694:70381..70558 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1491911889:71059..71796 | TCONS_00003721-exon-sc0000031-1491911889:71059..71796 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1510915933:71059..71796 | TCONS_00003721-exon-sc0000031-1510915933:71059..71796 | Clytia hemisphaerica | exon |
| TCONS_00003721-exon-sc0000031-1575043694:71059..71796 | TCONS_00003721-exon-sc0000031-1575043694:71059..71796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:69146..71796 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
BLAST of TCONS_00003721 vs. Swiss-Prot (Human)
Match: CHIA (Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 4.421e-84 Identity = 147/374 (39.30%), Postives = 209/374 (55.88%), Query Frame = 1
Query: 289 CFYANWAQYRKNEGRFLPENIDPSLCTHITYAHLKVDLNTHALVQRQPNDDLLLAQIVALKEVNPELKVIISVGGWNHEKEPRFSNMVRNQTTRGIFIQSSISYILQHRLDGISIDWEYPTHRGTSGPEDKHRYTLLLREFREAF-----TLQQLPFTLSASVSAGRRVISSAYEIPEIEQYVHWVNIMAYALHGAWEDETGHHTAM--------TGGLPNVPDSIEAWRELGMPDDKINVGVATYGRTYKLLFKEEFDIGGPVLGAGNAGTYTKGAGILSYYEICALNWTHRTPYWESVAGKPYASDKDQWVGYETPESIASEIRTLFSDRCYHGIAVWNLGYDDFNGTFCGQGKFPLLKSAVKTLH-ESRSC 1368
C++ NWAQYR GRF+P+NIDP LCTH+ YA N ++ ND L LK N +LK ++++GGWN P F+ MV R FI S I ++ Q+ DG+ DWEYP RG S P+DKH +T+L++E REAF + + ++A+V+AG I S YEIP++ QY+ ++++M Y LHG+WE TG ++ + + NV + W++ G P +K+ VG TYG + L IG P GAG AG Y K +GI +YYEIC T W++ PYA + WVGY+ +S + + L ++ + G VW + DDF GTFC QGKFPL+ + K L +S SC
Sbjct: 26 CYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNNEITTIEW--NDVTLYQAFNGLKNKNSQLKTLLAIGGWNFGTAP-FTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRG-SPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNK-FGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASC 394
The following BLAST results are available for this feature:
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