TCONS_00003737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003737
Unique NameTCONS_00003737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003737 ID=TCONS_00003737|Name=TCONS_00003737|organism=Clytia hemisphaerica|type=transcript|length=1317bp
CTTTGGGAATTAAtcaccatagcaatattttgataACGAGaGCGTTATCT
ACAAAACTATTTGGATGAAGGAGTAAAAATAATCTGGAGTAAGCgagacg
aagaagaagaaggggTGTTTTGCTTGTTGCCATGGAGCTTTCAGAAAACA
AGGACAAAAAAGAGATTGTGAAATATGACCATAACACCGGAAACATAGAC
AATAGTGTATCGGAAAGATACGAATCCGGGTATACGGGTACTGTTAAATA
CGGAATTGACCGTAAATTTATTGCCTTGATTACCTTTGCTTTTTTATTGC
TAATCGTTGGTATTGTCTTGATTATTCTTGCGAACGTTAACTCGTGTGAG
ACATCGAGTACTACTGAACTCGTTGACCCAGATCAGGGAAAGACTGTTTT
AAGTGACGACCTTTGTGACCCATCTGAAGAAGCTAAGCGAGTcaaattga
atgaatttttgataaaagtacAAGATGTGTACCACGAAGTTTTCCCGGAA
GAGATAGCATGGTCACCGGAAGTAACAGATCAAATTATAAGGAATAAATT
TAAAGCACATGATCCATCTCCAGAGAATTTGAAGAAGATTTGGGAAAATG
CTGACGCGCTGTTGAACGAATCAATCAATTTGaatccaGACAAATCGAAA
TTGAAACCGCGCGAACACAAAGCTTACCTGCAAGTACAGCATTTCCTTCA
AAACACTTTTGGCTTTGGTTACCTGAATTACAAAGCTGGATTATGGCTTC
TAGGACCTAGCAGTTTTTGTTCTGAACCGATATGCTATTTGGCGTATGCT
GTTTATAATTCCATTGGTTCAATGGCTCCTTCGACTGAAGATGATGTTTA
CTTCGTAGAAAACCAtttaaaagatgtgaaaaaaTCTATTTACACCTACA
ttgatgttttgaaaatgggtaTCAAGAAAGGTATGGTACGAACGCACGTG
GAATGTGTCGCTGGAATCGATGCCATGAAATCTAAGCATCCTAATATCAC
TGAAAACGGCCCTAAAGGCATCGTAGGCGAATGGTACGTGCGCCGAATGT
ATGAGCCGTTATTTTACAACAACGTTACGATCAAACTGGATAAGATTTTT
GTCAAGAAACANATTTCTcgaaacagtttggaaaacgttaaaaatccatg
tggaaaatacatttttgtgaaattgaaactctttcgattggaaaactaga
cttgttgggttggaaatttgtgtttctccaaacagtttggaaaacgttaa
aaatccatgtggaaattacatttttgtgaaattgaaactctttcgattgg
aaaactagactttttgg
Run BLAST on NCBI

transcript from alignment at sc0000031:400820..407325+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003737 ID=TCONS_00003737|Name=TCONS_00003737|organism=Clytia hemisphaerica|type=transcript|length=6506bp|location=Sequence derived from alignment at sc0000031:400820..407325+ (Clytia hemisphaerica)
CTTTGGGAATTAAtcaccatagcaatattttgataACGAGGTAAGCGTTG
TTAGTGACGTAAATgtataaaaaggtctattgaatcaCATTTAATAGAAA
TATGCAAGCATGCCTAACTGACACAATTTATTCCATCTTCTCACAGAAAA
TATTCATGTTGTTTTGACCTCTCTATTAtcataacattttttttctggag
TGGATTGCCGATTGTATTTTTCTTTCGAGAAGCGTGAGAAACTATTCTAG
GACGTTTGAACATTTCTTGCATTTTTGAATCTCATTTTGGATGACTCAac
ttttttcttcctggaaaactTTCCTAGTGCCATTTTACAACAGAAAAGAC
AGATTCTGGGTAGGTAAAGAAGTAACTTTGTGAAACAGCTTAAGTGATCA
GTGCCCGGCTGTgatgtattttataagcatttgtACGCAGCAGATCTTTT
TTACGGTACGGCTGGGTAGGGCAGCGAAAAGATTCTGGAAGTGGACCAGA
AATTCTTAGCCGGAGAAactaattgaaaatattttcggaaTTGAAACTAT
ACATCAATGTTTCCAAAATCTGCAATTTATGCCTTAATGAAAAActtgaa
gaaatattttataaataataAACGAACAGAACAAAAGGTGTGAgattata
caccttttcgaccgtagcagccaattgccgcgcgggcattttttgtccat
tttaccaccctaaaacttatctgatattccgatggcgtattggcggccgc
ccacgctaaagctctgaaaatatgcccgaccttcagagcaaagtgtgtcg
tagcatatttccacatctggtaccagataaccCTAAAACcttcccagtct
tttttttcctaaagacaatagaaaaaggtgtaaagaaggattggatcgag
tttagggtggtaaattaaataataaagtgacacgcgcctgaccgtgcgac
tacggtcgaaaaggtgtattgtcaaatgaaaaatatacaGGGTGGGCAAA
AAAAATATGGTCGGACAAAAGTTATGCTACTTTCAGAGCAATTAAGTAAA
AAAAGTGCTTTGCGAGTAGAATAATTTTTGTCTGACCATATTTTTTGCAT
ACCCTTTACCAGCTAATTATTATTAGTTGATtgattctcatttttatatt
atCAATTTTTACGACTTATTTCAAAGCGGATTGTACCATTTTTTCACGAA
AAATCTATGTGTATCAATATACTTATAACGCTGAAGATTGTAAAGGCTTG
AAGCTTTGAATACTGTTTATTtaacagtctagtttttgatattttatgtt
ctggtttaatATGTAATGAATAATGAAGACcaatatttttctatttcaga
GCGTTATCTACAAAACTATTTGGATGAAGGAGTAAAAATAATCTGGAGTA
AGCgagacgaagaagaagaaggggTGTTTTGCTTGTTGCCATGGAGCTTT
CAGAAAACAAGGACAAAAAAGAGATTGTGAAATATGACCATAACACCGGA
AACATAGACAATAGTGTATCGGAAAGATACGAATCCGGGTATACGGGTAC
TGTTAAATACGGAATTGACCGTAAATTTATTGCCTTGATTACCTTTGCTT
TTTTATTGCTAATCGTTGGTATTGTCTTGATTATTCTTGCGAACGTTAAC
TCGTGTGAGACATCGAGTACTACTGAACTCGTTGACCCAGATCAGGGAAA
GACTGTTTTAAGTGACGACCTTTGTGACCCATCTGAAGAAGCTAAGCGAG
TcaaattgaatgaatttttgataaaagtacAAGATGTGTACCACGAAGTT
TTCCCGGAAGAGATAGCATGGTCACCGGAAGTAACAGATCAAATTATAAG
GAATAAATTTAAAGCACATGATCCATCTCCAGAGAATTTGAAGAAGATTT
GGGAAAATGCTGACGCGCTGTTGAACGAATCAATCAATTTGGTATGTAGG
GGCGTTTCGTTTCTACTAATAATAACGCTGTAACCATTTTGAGTCCCGTC
TAACCGCTAAATCAACTAAGTTTACCGTAcgagttttaagtttttgaaaC
CCTACTTATCTCTTTTGTCATACCTTTATTTTAATCTgaattttcgtcaa
atttttcttcaaaacattcaaacgaTATTTGCTTATCGATAGGTAGATTA
AAATGACGTATTAATTTTGTCTAGCCTTTGTTCAGGCTAAAGAACCTTTT
TGCTGGCTAATCGCAAAGTAAGGTAGACTTAGCCGGCATAGTATACATGC
TtcgctttttgaaaaaaaatttctagaaGCAAATTTCTGCTTTACAAGCA
AAGTTGATTTCGTAGCAGGGTAGAACTGCCTTGCTTTCGGGTCAACCTGT
AGGTATCTATCGATATGTATTTATTtatgttcccgtttcatatcaggcac
atatatttcatatcaggacagtgtttgcttattgttattttatgctgata
taagcaaaacaatgtttttcttttcctctttctgaccaaccttgctccac
atccgtgtaaatccaatgtgaaaaagctggtaaattaaaattgatgagtt
agcaaacgatatcactcttatttaaaacaaaacctttaaccttACTAGTG
GAGAACTTTAAAACAACACCTGTGTACCAGCTCTAAACCAACTTTAAACA
GTTAGAGTCTTCAAGGGAACCAACAATTAGTTACAGTCTCTTTTATGAGT
TTTATGTTAAGGGGTCGAGGGGTCtagtttgaattacagaaagattccaA
TGATAGAATGTCGAATTGGAGAGAATTGCCTATACTTATTATacttatcg
accgccggaggcggtttctttcatagtggtacgctaatctcgttttgcct
tggctcgttactttgtctgccatttactttcggtttttttaactagatNc
actgtgacctagttatacttacttttcatttttagaatccaGACAAATCG
AAATTGAAACCGCGCGAACACAAAGCTTACCTGCAAGTACAGCATTTCCT
TCAAAACACTTTTGGCTTTGGTTACCTGAATTACAAAGCTGGATTATGGC
TTCTAGGACCTAGCAGTTTTTGTTCTGAACCGATATGCTATTTGGCGTAT
GCTGTTTATAATTCCATTGGTTCAATGGCTCCTTCGACTGAAGATGATGT
TTACTTCGTAGAAAACCAtttaaaagatgtgaaaaaaTCTATTTACACCT
ACAttgatgttttgaaaatgggtaTCAAGAAAGGtaagatattttctttt
tccataaagaacatttttagaggTAGACTTTTCAATTACTGGGTTTATAA
AAATGATTAGCTATTGGAATCTTcggttgttgttttttttgagaGCAAAA
CTGTTCTTTTCCTATAATTTCCGTATTTTTAGGTATTTTACATGCTATAA
CCTCATTGTCGTGTTATAACCTCGTTGTCATATCAAAGCCTTGTTTTCAT
GCTAGAACCTCGTTTTCATGTTATATAGGTATGGTACGAACGCACGTGGA
ATGTGTCGCTGGAATCGATGCCATGAAATCTAAGCATCCTAATATCACTG
AAAACGGCCCTAAAGGTAATTTGTCAACTTAATTTACTTTAAGAGCAGAA
AATTTCACAGGCAGAAACATTTGCGAGGTAGCAAAATCGCGAattttact
ttcgcgaattttactTTTGGAACGAATTCAGCGGATAtgactttcgcgaa
ttttagaatgttatttcattttgcaggaaaaaaagcgaaaaaaaatgcac
aaaaactgaaaacttagtataaaatagcaaaaaaagtgtacttttcGCGG
AAAAAACATTCACGAATTTTTCGTGTGATTTCTTACTTGGCAAAAACTTT
TGCGAAAAAGGACAAAAAttgtgaaagtttctgcccATAAAGTAGAAGTT
CCACGAGGACAATTTACAACCACTTTAGTCTTCGGCCAGTATGCTAGCTA
TCAAAGCCGTTTTTATACGATACTTGCACTATGAAGGCAAGGAAAAGTGA
TAAGATCACCTAGATTTAGTATTTTTTACACTTTGGAACGGGTTTTAGAT
TCCTTCACGTTCCAGGGTGtgaaaccattgagtttcaagcccgaagagct
agaggcgaaactttaacccttctcaggcaagagaaattgaagctactcat
ctcccatccagaacgcgtcGTAATCATGAAGgtggattgtatctagcggc
tCCTTttttttggaggactacattctgttaaatctagcgatagattatag
tttcaatccggcgtttatGTAAAAGCttcgcgcgggcgttctggatggga
aataagtggtttcatttcccatcaggagtctcgcctctagcccttcaggc
ttgaaACTCAGTGTATGAAACGTGCTTATCACAACCCAGTTGTAGATAAA
CTCTACTCACATTTTCTGTACAGTGGCAAAGCAACTAAACTTTCTTAGAG
TCctaaattttcaacaaaaaaaaacaatttaaatcaTTGTTTATATTTTC
AGGCATCGTAGGCGAATGGTACGTGCGCCGAATGTATGAGCCGTTATTTT
ACAACAACGTTACGATCAAACTGGATAAGATTTTTGTCAAGAAACATGGT
AAAAATGTTACGGATTATATTTTGGGATTGATGGAACCAAACATCGGAAA
ACCAATACATGATATGTTACAGTAAGTGAAACTAACCGTTCTATTTGTGA
AATTCCTCCATCACTTCTAATCAATAGAATGGCTTCGATTTGTTTCAAAG
TGAAACGGAACCGTTACAACATGATCTTAGTAGACGAgaagattttaaaa
taataaaagacAACATTTGAAATTATTGAGGGTCCCAATAATTtgagggt
ttttttttttttttttttttggctaaAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttttttttttttttttcg
gctAGAACATACCTGTTATCTCGCAAAcctcacaggaaaaaattttcgat
ttccaagtttggaaattcaatatttttgggttggaaattttggttttata
attgaaggatggaaatttgagcgattactttaagctgatttggaaaacgt
aaattacccataggttttgtagaataaaccaatgccatTGAAatatcaag
tgaaaaaaacccatgtagaaatgacaattttccaaggctggttggaaaac
atgactttttgggtgggaaatttttattttccaaacNGCATCCTAATATC
ACTGAAAACGGCCCTAAAGGTAATTTGTCAACTTAATTTACTTTAAGAGC
AGAAAATTTCACAGGCAGAAACATTTGCGAGGTAGCAAAATCGCGAattt
tactttcgcgaattttactTTTGGAACGAATTCAGCGGATAtgactttcg
cgaattttagaatgttatttcattttgcaggaaaaaaagcgaaaaaaaat
gcacaaaaactgaaaacttagtataaaatagcaaaaaaagtgtacttttc
GCGGAAAAAACATTCACGAATTTTTCGTGTGATTTCTTACTTGGCAAAAA
CTTTTGCGAAAAAGGACAAAAAttgtgaaagtttctgcccATAAAGTAGA
AGTTCCACGAGGACAATTTACAACCACTTTAGTCTTCGGCCAGTATGCTA
GCTATCAAAGCCGTTTTTATACGATACTTGCACTATGAAGGCAAGGAAAA
GTGATAAGATCACCTAGATTTAGTATTTTTTACACTTTGGAACGGGTTTT
AGATTCCTTCACGTTCCAGGGTGtgaaaccattgagtttcaagcccgaag
agctagaggcgaaactttaacccttctcaggcaagagaaattgaagctac
tcatctcccatccagaacgcgtcGTAATCATGAAGgtggattgtatctag
cggctCCTTttttttggaggactacattctgttaaatctagcgatagatt
atagtttcaatccggcgtttatGTAAAAGCttcgcgcgggcgttctggat
gggaaataagtggtttcatttcccatcaggagtctcgcctctagcccttc
aggcttgaaACTCAGTGTATGAAACGTGCTTATCACAACCCAGTTGTAGA
TAAACTCTACTCACATTTTCTGTACAGTGGCAAAGCAACTAAACTTTCTT
AGAGTCctaaattttcaacaaaaaaaaacaatttaaatcaTTGTTTATAT
TTTCAGGCATCGTAGGCGAATGGTACGTGCGCCGAATGTATGAGCCGTTA
TTTTACAACAACGTTACGATCAAACTGGATAAGATTTTTGTCAAGAAACA
NATTTCTcgaaacagtttggaaaacgttaaaaatccatgtggaaaataca
tttttgtgaaattgaaactctttcgattggaaaactagacttgttgggtt
ggaaatttgtgtttctccaaacagtttggaaaacgttaaaaatccatgtg
gaaattacatttttgtgaaattgaaactctttcgattggaaaactagact
ttttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002088XLOC_002088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003737-exon-sc0000031-1491911889:400820..400859TCONS_00003737-exon-sc0000031-1491911889:400820..400859Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1510915933:400820..400859TCONS_00003737-exon-sc0000031-1510915933:400820..400859Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1575043694:400820..400859TCONS_00003737-exon-sc0000031-1575043694:400820..400859Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1491911889:402169..402760TCONS_00003737-exon-sc0000031-1491911889:402169..402760Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1510915933:402169..402760TCONS_00003737-exon-sc0000031-1510915933:402169..402760Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1575043694:402169..402760TCONS_00003737-exon-sc0000031-1575043694:402169..402760Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1491911889:403755..404052TCONS_00003737-exon-sc0000031-1491911889:403755..404052Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1510915933:403755..404052TCONS_00003737-exon-sc0000031-1510915933:403755..404052Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1575043694:403755..404052TCONS_00003737-exon-sc0000031-1575043694:403755..404052Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1491911889:404298..404384TCONS_00003737-exon-sc0000031-1491911889:404298..404384Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1510915933:404298..404384TCONS_00003737-exon-sc0000031-1510915933:404298..404384Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1575043694:404298..404384TCONS_00003737-exon-sc0000031-1575043694:404298..404384Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1491911889:407026..407325TCONS_00003737-exon-sc0000031-1491911889:407026..407325Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1510915933:407026..407325TCONS_00003737-exon-sc0000031-1510915933:407026..407325Clytia hemisphaericaexon
TCONS_00003737-exon-sc0000031-1575043694:407026..407325TCONS_00003737-exon-sc0000031-1575043694:407026..407325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:400820..407325 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.51578e-05	3.2312e-05	0	0	0	9.0549e-06	1.42809e-08	4.30789e-10	0	0.416455	3.034e-09	0.000777952	0	0	3.5928e-08	0.00988018	0	3.41212e-10	2.32578e-07	0	9.60866e-10	7.39088e-05	4.01474e-07	0	0	0	0	5.06858e-06	1.47195e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top