TCONS_00003769 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003769
Unique NameTCONS_00003769
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003769 ID=TCONS_00003769|Name=TCONS_00003769|organism=Clytia hemisphaerica|type=transcript|length=338bp
CGACGACAAGTGGTCTTCTTTCATATGATCTTCCTATCTCCATTATTTCC
ATCTTCTTCTTGAACCGACATTGTAACCGTTTCAACTCGTGAAGTATCAA
AAAACCTGTTGAATCTCTTGTAATTGAATATCCTCCTCCTCCTGAAGGCG
CTGTATACATTCTGCTTGACTCTTTCATCGTTATCCTCTAGTTCTTTATC
AATTGCTTTTTGAACGTCTTTGATCAAAATCTTTCTTTGGATATTTTCTT
TGGATAGATATGCGTCCAACTTGATGCTTTGCTCTTTGGTGACCATCAAC
TGACAATGTTGTGGACTATCAGACCAAACATCGATTTG
Run BLAST on NCBI

transcript from alignment at sc0000031:21857..22840-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003769 ID=TCONS_00003769|Name=TCONS_00003769|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at sc0000031:21857..22840- (Clytia hemisphaerica)
CGACGACAAGTGGTCTTCTTTCATATGATCTTCCTATCTCCATTATTTCC
ATCTTCTTCTTGAACCGACATTGTAACCGTTTCAACTCGTGAAGTATCTG
AATAAATATATAGTAGTTGAACACCATTTAAAAGAGTGCTAAATAACTGT
GTAGAGCAAATACATAAATTTATTTCAAAATTTCGCTGTTTTTTTTAACA
ATGAAGTTTTGAAATAAATTTATCTGGATAAATAATATTTTGATATTTTA
TCTGATCCAAAATAACTCAAGTTTCATTCAAAAGGTGAACTAGCTGAAAC
ACAACTTTAATTAAACAATTATTTTAATGTTACATGGATCTCATAAATGC
TAAATCGATATTTAAACATCGTTTCTGCAGATTCATGCATCTTACTAACT
GAAACAAGATGTTTTGAAGTTTATGTCCATGGAATATTATGACACCCCGC
ATAAGTGACCCGGTGAAAAAAGTCGACAAAAAGCATAAGTTTAAGCCTCG
GTGGGATAATGAGGAGATCCGCTGGTCAAAATATATTGAAATTTTCTACT
CAAAAATTGGAAATTTATTTGTTTTAAGTACACTGTCAAAAAATCACATT
TAAAAGCGATTTAAAAGTTATCAACCTAGTGAGTCTTTGAGATTTCTTTA
TAGCCAAGACAGCGACCTGGTCACTGAGACAGGGGTGTATTATGCATAGA
TGCTTCACGTTTTTGACTTTATGTTTAGATGTTTCACTTACATCAAAAAA
CCTGTTGAATCTCTTGTAATTGAATATCCTCCTCCTCCTGAAGGCGCTGT
ATACATTCTGCTTGACTCTTTCATCGTTATCCTCTAGTTCTTTATCAATT
GCTTTTTGAACGTCTTTGATCAAAATCTTTCTTTGGATATTTTCTTTGGA
TAGATATGCGTCCAACTTGATGCTTTGCTCTTTGGTGACCATCAACTGAC
AATGTTGTGGACTATCAGACCAAACATCGATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002103XLOC_002103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003769-exon-sc0000031-1575043694:22746..22840TCONS_00003769-exon-sc0000031-1575043694:22746..22840Clytia hemisphaericaexon
TCONS_00003769-exon-sc0000031-1575043694:21857..22099TCONS_00003769-exon-sc0000031-1575043694:21857..22099Clytia hemisphaericaexon
TCONS_00003769-exon-sc0000031-1510915933:22746..22840TCONS_00003769-exon-sc0000031-1510915933:22746..22840Clytia hemisphaericaexon
TCONS_00003769-exon-sc0000031-1510915933:21857..22099TCONS_00003769-exon-sc0000031-1510915933:21857..22099Clytia hemisphaericaexon
TCONS_00003769-exon-sc0000031-1491911889:22746..22840TCONS_00003769-exon-sc0000031-1491911889:22746..22840Clytia hemisphaericaexon
TCONS_00003769-exon-sc0000031-1491911889:21857..22099TCONS_00003769-exon-sc0000031-1491911889:21857..22099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:21857..22840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.59226	1.16759	4.85714	8.4444	0	6.05982	3.4433	3.93173	6.30013	9.67325	1.03971	1.16669	1.54534	0.534432	0.152557	0	0.00358455	0.21782	0	0	7.48434	11.7237	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003146M14A_act_pep
IPR009020Peptidase/Inhibitor_I9
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004180carboxypeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004180 carboxypeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top