TCONS_00003827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003827
Unique NameTCONS_00003827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003827 ID=TCONS_00003827|Name=TCONS_00003827|organism=Clytia hemisphaerica|type=transcript|length=443bp
taaaaagacgattccttaaatgccatgacagaaaatacaatggaaaagct
attaaaatcgaatccctcatgagcaaatgccaaattacaaatgccaggct
ggtctaaacgcagcctatgATGGCAGAAAAGTCATCTTCAACTTAATAAT
TTAGTTTTTATTATGTTTAATTTGTAATCCTGGGTGTATATATTAGTTCT
TTTGTTAAgtgtcttttcatttcattgcGTCTCACGAGGCTTCTTTGTTT
TGCATTGCGTCACATTCCCTTGCGTCTACTGATAGTTGACCCTCAAGGGA
AATTAGATTGGGTTTATATTTTGTAACTATTTTGTTTGTAAATTAGTTCG
ACAGAGAGAGATTAAGAGAGCGTGTGTGGGTGTTGTGATAATGGGAGCAA
AACTATTTTTACTGTCGTTTTTAAAAGAACTTGAGAACTCGAC
Run BLAST on NCBI

transcript from alignment at sc0000031:30316..30758

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003827 ID=TCONS_00003827|Name=TCONS_00003827|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000031:30316..30758 (Clytia hemisphaerica)
GTCGAGTTCTCAAGTTCTTTTAAAAACGACAGTAAAAATAGTTTTGCTCC
CATTATCACAACACCCACACACGCTCTCTTAATCTCTCTCTGTCGAACTA
ATTTACAAACAAAATAGTTACAAAATATAAACCCAATCTAATTTCCCTTG
AGGGTCAACTATCAGTAGACGCAAGGGAATGTGACGCAATGCAAAACAAA
GAAGCCTCGTGAGACgcaatgaaatgaaaagacacTTAACAAAAGAACTA
ATATATACACCCAGGATTACAAATTAAACATAATAAAAACTAAATTATTA
AGTTGAAGATGACTTTTCTGCCATcataggctgcgtttagaccagcctgg
catttgtaatttggcatttgctcatgagggattcgattttaatagctttt
ccattgtattttctgtcatggcatttaaggaatcgtcttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002136XLOC_002136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003827-exon-sc0000031-1491911889:30316..30758TCONS_00003827-exon-sc0000031-1491911889:30316..30758Clytia hemisphaericaexon
TCONS_00003827-exon-sc0000031-1510915933:30316..30758TCONS_00003827-exon-sc0000031-1510915933:30316..30758Clytia hemisphaericaexon
TCONS_00003827-exon-sc0000031-1575043694:30316..30758TCONS_00003827-exon-sc0000031-1575043694:30316..30758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:30316..30758 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.418078	0.7347	0.684466	0.480697	0.189754	0.704619	0	1.49909	1.9423	1.25465	1.73542	1.4682	1.89405	0.818348	1.02632	6.26585	5.36166	1.79119	1.14273	9.24473	9.7709	12.7178	15.7713	2.97828	1.63182	0.567224	1.48106	0	0.594939
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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