|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003846 ID=TCONS_00003846|Name=TCONS_00003846|organism=Clytia hemisphaerica|type=transcript|length=1467bp
GTGAGGGTGTACCAGCTAACGAAGTTACTAACACATTGTTATAATATATA
CCGCTAAATTAAAATTATCTCTGAAAAATTTAAGTTACGTACGATTCATA
GATTATAACAGTCTCAAAAAAAACTCAATATTGTCCATCAATATGTATTT
TCTTTGTATGTTTAGTCTAATTGTCTTTCAACACCCAACAAACAATAGCT
ATTTTGCTTTGGCCGAAAAAAAGTTCTTCGGGTACATCCTTAAATTCCCA
ATACTTATAGTCATTCAGTACGCTGTCGTACGCTTGCCTTTGCTTTACAT
TTATGCGAGAAGACTTTAAAGAATCCTTTGGGTGAAGCAAAATGAACTCT
CCCTTCTTTAAAAGCTGCGTATCCAAACCTTTCACTTCAAAGGTATTAGA
AAAGTGTGGGCACCTGTCATCAATATCAAAGTTTATAAAGCGGAGATATA
TTTTACAATTACCAAAAACTTGACGCATGAACAAGAACCGTTCATTCATA
TAAAGCTTTTCGTTTACCATTGCATTGGCTAGATTTTCATACCATTCTTG
GTAACTTGTTTTGAGCAATGGAATGCCATGAAGCTTGGTTTTATAAATGT
AATGATTCACACCCCATTCCAAACGTTCCATTAAAGGTAATTTCAAAGGA
TCTGCTATTTCTTCCTTCTTCACAACAGCATCGTTGTTGATACCAACTGC
TTGATCGTTTGGTTTCTCCCTTTCGTCTTTAACATTCGTTTTCAGCATTT
GTACTTCATTGCGCAATGACTCGATggttttttccattttgttcTTCATC
TTGACCGTTTCAATTTTGTGTTCATTCTCTTTTTTGAGAAGTTCTCCATC
TTTTTCTGCCATTTTCAACGCTAATTCTTTATCTTTTTCTGCCATTTTCA
AGGtcatttctttatctttttctgCGATTTTCTCTACCATCTCTTTGTCC
TTCTCTTTCAAACGATCTTTAAACTCGAGTTCTATAGCAGCCATTTGCTT
TTCTGAGTTGGAATCGACCTCCATTTTGTTTATTTGCAGTTCATGAGTGC
CCTTTAATTTCATTATCTCATTTTCGTGCTTGAGCGATTGAACTTCTTTC
TGCAACTCTAAAATCTTGGTTTTGTTGTCATTTTCTTGTTTCGACAATTT
GTTGTCCATCTCCAAAAGTTGAATTTTGTGTTCCAACTTCAATGTTTTGG
TTTGTCGCTCATGCTCTTCCTTCAGTTTGGTCAACTCATTGTTGGCAGTT
TGCTGAGGGTGGCTTCGCTGAGGGTGGCTCATTGCTGTAGCGGCACAATG
AGCCAAATTTCTTTCATCCGAGTGAGCTGAATTCATCTTTGATTGATATG
AGTATCACCAGCAAGTTATTCTATCAGTATTAACTATAAGTACAACAGAG
TACAACTATCACTTTCGAAAATATTTAACATCATTGCATTTGCATACAAT
AACATAGTATGATTtca Run BLAST on NCBI protein sequence of TCONS_00003846-protein >TCONS_00003846-protein ID=TCONS_00003846-protein|Name=TCONS_00003846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MNSAHSDERNLAHCAATAMSHPQRSHPQQTANNELTKLKEEHERQTKTLK
LEHKIQLLEMDNKLSKQENDNKTKILELQKEVQSLKHENEIMKLKGTHEL
QINKMEVDSNSEKQMAAIELEFKDRLKEKDKEMVEKIAEKDKEMTLKMAE
KDKELALKMAEKDGELLKKENEHKIETVKMKNKMEKTIESLRNEVQMLKT
NVKDEREKPNDQAVGINNDAVVKKEEIADPLKLPLMERLEWGVNHYIYKT
KLHGIPLLKTSYQEWYENLANAMVNEKLYMNERFLFMRQVFGNCKIYLRF
INFDIDDRCPHFSNTFEVKGLDTQLLKKGEFILLHPKDSLKSSRINVKQR
QAYDSVLNDYKYWEFKDVPEELFFGQSKIAIVCWVLKDN Run BLAST on NCBI transcript from alignment at sc0000031:607306..608772 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003846 ID=TCONS_00003846|Name=TCONS_00003846|organism=Clytia hemisphaerica|type=transcript|length=1467bp|location=Sequence derived from alignment at sc0000031:607306..608772 (Clytia hemisphaerica)
tgaAATCATACTATGTTATTGTATGCAAATGCAATGATGTTAAATATTTT
CGAAAGTGATAGTTGTACTCTGTTGTACTTATAGTTAATACTGATAGAAT
AACTTGCTGGTGATACTCATATCAATCAAAGATGAATTCAGCTCACTCGG
ATGAAAGAAATTTGGCTCATTGTGCCGCTACAGCAATGAGCCACCCTCAG
CGAAGCCACCCTCAGCAAACTGCCAACAATGAGTTGACCAAACTGAAGGA
AGAGCATGAGCGACAAACCAAAACATTGAAGTTGGAACACAAAATTCAAC
TTTTGGAGATGGACAACAAATTGTCGAAACAAGAAAATGACAACAAAACC
AAGATTTTAGAGTTGCAGAAAGAAGTTCAATCGCTCAAGCACGAAAATGA
GATAATGAAATTAAAGGGCACTCATGAACTGCAAATAAACAAAATGGAGG
TCGATTCCAACTCAGAAAAGCAAATGGCTGCTATAGAACTCGAGTTTAAA
GATCGTTTGAAAGAGAAGGACAAAGAGATGGTAGAGAAAATCGcagaaaa
agataaagaaatgaCCTTGAAAATGGCAGAAAAAGATAAAGAATTAGCGT
TGAAAATGGCAGAAAAAGATGGAGAACTTCTCAAAAAAGAGAATGAACAC
AAAATTGAAACGGTCAAGATGAAgaacaaaatggaaaaaaccATCGAGTC
ATTGCGCAATGAAGTACAAATGCTGAAAACGAATGTTAAAGACGAAAGGG
AGAAACCAAACGATCAAGCAGTTGGTATCAACAACGATGCTGTTGTGAAG
AAGGAAGAAATAGCAGATCCTTTGAAATTACCTTTAATGGAACGTTTGGA
ATGGGGTGTGAATCATTACATTTATAAAACCAAGCTTCATGGCATTCCAT
TGCTCAAAACAAGTTACCAAGAATGGTATGAAAATCTAGCCAATGCAATG
GTAAACGAAAAGCTTTATATGAATGAACGGTTCTTGTTCATGCGTCAAGT
TTTTGGTAATTGTAAAATATATCTCCGCTTTATAAACTTTGATATTGATG
ACAGGTGCCCACACTTTTCTAATACCTTTGAAGTGAAAGGTTTGGATACG
CAGCTTTTAAAGAAGGGAGAGTTCATTTTGCTTCACCCAAAGGATTCTTT
AAAGTCTTCTCGCATAAATGTAAAGCAAAGGCAAGCGTACGACAGCGTAC
TGAATGACTATAAGTATTGGGAATTTAAGGATGTACCCGAAGAACTTTTT
TTCGGCCAAAGCAAAATAGCTATTGTTTGTTGGGTGTTGAAAGACAATTA
GACTAAACATACAAAGAAAATACATATTGATGGACAATATTGAGTTTTTT
TTGAGACTGTTATAATCTATGAATCGTACGTAACTTAAATTTTTCAGAGA
TAATTTTAATTTAGCGGTATATATTATAACAATGTGTTAGTAACTTCGTT
AGCTGGTACACCCTCAC Coding sequence (CDS) from alignment at sc0000031:607306..608772 >TCONS_00003846 ID=TCONS_00003846|Name=TCONS_00003846|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000031:607306..608772 (Clytia hemisphaerica)
ATGAATTCAGCTCACTCGGATGAAAGAAATTTGGCTCATTGTGCCGCTAC
AGCAATGAGCCACCCTCAGCGAAGCCACCCTCAGCAAACTGCCAACAATG
AGTTGACCAAACTGAAGGAAGAGCATGAGCGACAAACCAAAACATTGAAG
TTGGAACACAAAATTCAACTTTTGGAGATGGACAACAAATTGTCGAAACA
AGAAAATGACAACAAAACCAAGATTTTAGAGTTGCAGAAAGAAGTTCAAT
CGCTCAAGCACGAAAATGAGATAATGAAATTAAAGGGCACTCATGAACTG
CAAATAAACAAAATGGAGGTCGATTCCAACTCAGAAAAGCAAATGGCTGC
TATAGAACTCGAGTTTAAAGATCGTTTGAAAGAGAAGGACAAAGAGATGG
TAGAGAAAATCGcagaaaaagataaagaaatgaCCTTGAAAATGGCAGAA
AAAGATAAAGAATTAGCGTTGAAAATGGCAGAAAAAGATGGAGAACTTCT
CAAAAAAGAGAATGAACACAAAATTGAAACGGTCAAGATGAAgaacaaaa
tggaaaaaaccATCGAGTCATTGCGCAATGAAGTACAAATGCTGAAAACG
AATGTTAAAGACGAAAGGGAGAAACCAAACGATCAAGCAGTTGGTATCAA
CAACGATGCTGTTGTGAAGAAGGAAGAAATAGCAGATCCTTTGAAATTAC
CTTTAATGGAACGTTTGGAATGGGGTGTGAATCATTACATTTATAAAACC
AAGCTTCATGGCATTCCATTGCTCAAAACAAGTTACCAAGAATGGTATGA
AAATCTAGCCAATGCAATGGTAAACGAAAAGCTTTATATGAATGAACGGT
TCTTGTTCATGCGTCAAGTTTTTGGTAATTGTAAAATATATCTCCGCTTT
ATAAACTTTGATATTGATGACAGGTGCCCACACTTTTCTAATACCTTTGA
AGTGAAAGGTTTGGATACGCAGCTTTTAAAGAAGGGAGAGTTCATTTTGC
TTCACCCAAAGGATTCTTTAAAGTCTTCTCGCATAAATGTAAAGCAAAGG
CAAGCGTACGACAGCGTACTGAATGACTATAAGTATTGGGAATTTAAGGA
TGTACCCGAAGAACTTTTTTTCGGCCAAAGCAAAATAGCTATTGTTTGTT
GGGTGTTGAAAGACAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003846-exon-sc0000031-1491911889:607306..608772 | TCONS_00003846-exon-sc0000031-1491911889:607306..608772 | Clytia hemisphaerica | exon |
| TCONS_00003846-exon-sc0000031-1510915933:607306..608772 | TCONS_00003846-exon-sc0000031-1510915933:607306..608772 | Clytia hemisphaerica | exon |
| TCONS_00003846-exon-sc0000031-1575043694:607306..608772 | TCONS_00003846-exon-sc0000031-1575043694:607306..608772 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000031 | supercontig | sc0000031:607306..608772 . |
Blast
The following BLAST results are available for this feature:
|
