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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003860 ID=TCONS_00003860|Name=TCONS_00003860|organism=Clytia hemisphaerica|type=transcript|length=1743bp
CACAGGCATTTTAATCTCGAGGATTGAGTAAGTGTTTGAGTAGTATTTTT
ACTaccattttatatattttatgttATAATGTATATGTATGTATGGAAAG
CCCAGTCAAAGTAAAAGCTGTTTACAAAAAAGGTATTCGGTATTTTTGGA
CCGGACACTATAACTTGTAAAACTTGTAATCTCTTCCACAACTCTCTGCC
GAAGTGAAAACTCTGCCAAAAGTGAACaagatcaaaattgaaaaaactga
cgtcactttttcttttaaaaagtgatCTGAAACCATTGCATTGAGTTGAG
AAAAGTCatgagaaaataagaaaatctggAAACGGTCGACAACAGCAGCA
ATATCGTCGAAAACCACgaatcaaaaataaaaggtTAGAATTTCTCCTTG
TCGCTGAAGATTTAAGAGAAGAAAAGATGGGTggtaaaaagaacaaaaat
aaagaaaaaggtccTGGTTTAACACCAGCGCAACGGAAAAATAATGCTCG
AAAATCATTGAAAGATCAAGTCGAAatcaaaaaaaccttgaaaagtatCC
AAGAAATTGAACGAGATGATAAATTATGGGACTCGGAATCTGCGAAACTG
GCTGAGCTTGGTAAACAAGTTGAAGAAGGTAAGAAAGATTATGGAAAAGT
AGAAAGTGAACGTAATACGAGGTTGTGTACTACTTTTTTCCATACACCTA
ACTCAAACCAAGAACGAAGAGTCGATTATAAAAAAGCCATGACGAACTTA
GACCATGTCAACATGCTCCTGAAGGAAGACTTGGGTAAGGAAACAAAGAA
ATACGCCTCATGGTATAACGCTTGTGTTCATATGTTGGATAAAGAGAAAA
TAGCCAAGGAGAAATGCCAGTTATTCCATACAAGTGATAAAGGAAAGATA
GAGGATCTGGTCGAAGAAAAAAGAAACGCAGAATCGAAGCTGAAAGAATT
GAAAGGCATTTATCAACAAATGGCGGAGCTTGATAGGGAACGACAAATCA
ATAATGTCAATTTGACTTTAGAAGAATATATGACGCTCAAGCATAACCGT
TCATCGAGAAGTATAGACGAATTACGAAAGCTCTTGAAACAGGTCAACAC
ACAATCGCGACAGATACAGAAGGAGTTGGAAAACCGTCGTACAACCTGTC
AAAAGATTAGTAACCAGATTAAACAAAATGAAATCGCCTCCGTGGAGGAA
CACCAACGATATAAAGACATCGTGGTGGAGAACAAAAAACTAATGGCGAA
GCTGGAATATTTGAATAAGAAACAACACTCCGTCGCAGAGGAAAAGAATC
AAGCTTTGATTGACATGGAACGTGAAAAAGAACGAGCATATCATGAAAGT
AAAGAAACGATCGAAATCGAGGAAAGGATCAAACAATTACGACTTCAACA
CGACTTAGATAGAGCCTCCGAAGCTAAATACGAAGAGATTTTACAAGCAG
CCAAGGAACAGGACTGGGCACAAGACGTGGCTTTGAAGCATGAACGAGAC
AATATCACATCGTTGACGGAGAGAATTTGTATCGAGAAAAGGCTGGTCAA
CACTCAACAAAAACAACTAGAGCAAGTAAATGGGTATAACGAGGACATGT
TACGATATGTTGATAAAACCACATACAAAATGGTAGAGGAGTTCCACGAT
GACGGGAAAAGACATTGGCCATGTGAAATAACACGCCATTAATCATTCAT
TTCAATATACAGTATAgaagattttgtaatttttggaaaaaat Run BLAST on NCBI protein sequence of TCONS_00003860-protein >TCONS_00003860-protein ID=TCONS_00003860-protein|Name=TCONS_00003860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MGGKKNKNKEKGPGLTPAQRKNNARKSLKDQVEIKKTLKSIQEIERDDKL
WDSESAKLAELGKQVEEGKKDYGKVESERNTRLCTTFFHTPNSNQERRVD
YKKAMTNLDHVNMLLKEDLGKETKKYASWYNACVHMLDKEKIAKEKCQLF
HTSDKGKIEDLVEEKRNAESKLKELKGIYQQMAELDRERQINNVNLTLEE
YMTLKHNRSSRSIDELRKLLKQVNTQSRQIQKELENRRTTCQKISNQIKQ
NEIASVEEHQRYKDIVVENKKLMAKLEYLNKKQHSVAEEKNQALIDMERE
KERAYHESKETIEIEERIKQLRLQHDLDRASEAKYEEILQAAKEQDWAQD
VALKHERDNITSLTERICIEKRLVNTQQKQLEQVNGYNEDMLRYVDKTTY
KMVEEFHDDGKRHWPCEITRH Run BLAST on NCBI transcript from alignment at sc0000038:39429..42484+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003860 ID=TCONS_00003860|Name=TCONS_00003860|organism=Clytia hemisphaerica|type=transcript|length=3056bp|location=Sequence derived from alignment at sc0000038:39429..42484+ (Clytia hemisphaerica)
CACAGGCATTTTAATCTCGAGGATTGAGTAAGTGTTTGAGTAGTATTTTT
ACTaccattttatatattttatgttATAATGTATATGTATGTATGGAAAG
CCCAGTCAAAGTAAAAGCTGTTTACAAAAAAGGTATTCGGTATTTTTGGA
CCGGACACTATAACTTGTAAAACTTGTAATCTCTTCCACAACTCTCTGCC
GAAGTGAAAACTCTGCCAAAAGTGAACaagatcaaaattgaaaaaactga
cgtcactttttcttttaaaaagtgatCTGAAACCATTGCATTGAGTTGAG
AAAAGTCatgagaaaataagaaaatctggAAACGGTCGACAACAGCAGCA
ATATCGTCGAAAACCACgaatcaaaaataaaaggtTAGAATTTCTCCTTG
TCGCTGAAGATTTAAGAGAAGAAAAGATGGGTggtaaaaagaacaaaaat
aaagaaaaaggtccTGGTTTAACACCAGCGCAACGGAAAAATAATGCTCG
AAAATCATTGAAAGATCAAGTCGAAatcaaaaaaaccttgaaaagtatCC
AAGAAATTGAACGAGATGATAAATTATGGGACTCGGAATCTGCGAAACTG
GCTGAGCTTGGTAAACAAGTTGAAGAAGGTAAGAAAGATTATGGAAAAGT
AGAAAGTGAACGTAATACGAGGTTGTGTACTACTTTTTTCCATACACCTA
ACTCAAACCAAGAACGAAGAGTCGATTATAAAAAAGCCATGACGAACTTA
GACCATGTCAACATGCTCCTGAAGGAAGACTTGGGTAAGGAAACAAAGAA
ATACGCCTCATGGTATAACGCTTGTGTTCATATGTTGGATAAAGAGAAAA
TAGCCAAGGAGAAATGCCAGTTATTCCATACAAGTGATAAAGGAAAGATA
GAGGATCTGGTCGAAGAAAAAAGAAACGCAGAATCGAAGCTGAAAGAATT
GAAAGGCATTTATCAACAAATGGCGGAGCTTGATAGGGAACGACAAATCA
ATAATGTCAATTTGACTTTAGAAGAATATATGACGCTCAAGCATAACCGT
AAGTCACTGCCTCGCCGTTTCTATCTTCGCTCGTTCGTTTGAATAATAGT
TTCGCCGTTCCTATATTTGCTCGTTCGTTCAAATAATAATATCGGAGTTC
CTATAATTGCTCGTTTGTTCGAATAATAGTCTCGCCGTTCCTATAATTGC
TTGTTCGTTCGAAAAATAGTTTCGCCAATCATATATTTTCGCGTTCGTTC
GAATAATAATCTCGCAGTTACTATATTTGCTCGTTCGTTCGAATAATAAT
ATTGGCGTTCGTATATTTGCttgttctttcaaaaaataatatcgCCAATC
ATATATTTTCTCGTTCGTTCTAATAATAATCTCGCCGTTACTATATTTGC
TCGTTCGTTCGAATGGTCATCTCGCCGTTCCTATATTTGTTCATTCGTTC
GAATAATAGTTTTGCCGTTCCTATATTTGCTCTTTCGTTAGAATAATAGT
CTCGCCGTTCCTATATTTGCTTGTTCGTTCGAAAAATAGTTTCGCCAATC
ATAGTATATTTTCTCGTTCGTTCGAATAGCAGTTCCGTTTCTATTGTGTA
TTACTTGGCCGATtccgtgtgacgtcattttcacccacgatCAGCCCTTT
TGGTAGAAAGAATATGTACAGGATGATTTATTAACACCTTGATAgctcaa
aatctttaaatatttaCCGATTGGACCTACACATAGTTTCTTGTTTGATT
TTGGTTCGTGGGTGAAATTTATGTCAGTTATAAACAGGCAGCTTGCTTGA
AGTTTGCTTGAGGATAGTCCCTAACTGGATTTTGGTGAATCGGtcaatat
accttatcggccctaattcaacgccggccccttttacgccggcctttatt
acgccacagccgccacagcctgattttgggcttacgccaattagggccgt
taataacaccaaaatttgtaaaaatggctacttatgcttcaaattagtaa
ataatgacaaaaatttacattcaaatgtcatttttcagtagtaaactgtt
gaaaattccatcgaaaatcactgatttttaaatctgagttttaaatatgg
agtaaaacaatggataatctTCCTCTTCAAATCATACcgaaaatccttta
aattgagaaataatgataaaaaattaacgccacttttaggttaaaattgc
aaaTCTTGGCCTTTTTTACGCtggcccttttaacgccggccaTTATTACG
CCacaagcccaaaaataacgccaataagggccggtgttaaaagggccgat
aaggtacataAAATTCGAGAATTTTCAATGCctttttcattcattctttt
ttgGAAATCAGGTTCATCGAGAAGTATAGACGAATTACGAAAGCTCTTGA
AACAGGTCAACACACAATCGCGACAGATACAGAAGGAGTTGGAAAACCGT
CGTACAACCTGTCAAAAGATTAGTAACCAGATTAAACAAAATGAAATCGC
CTCCGTGGAGGAACACCAACGATATAAAGACATCGTGGTGGAGAACAAAA
AACTAATGGCGAAGCTGGAATATTTGAATAAGAAACAACACTCCGTCGCA
GAGGAAAAGAATCAAGCTTTGATTGACATGGAACGTGAAAAAGAACGAGC
ATATCATGAAAGTAAAGAAACGATCGAAATCGAGGAAAGGATCAAACAAT
TACGACTTCAACACGACTTAGATAGAGCCTCCGAAGCTAAATACGAAGAG
ATTTTACAAGCAGCCAAGGAACAGGACTGGGCACAAGACGTGGCTTTGAA
GCATGAACGAGACAATATCACATCGTTGACGGAGAGAATTTGTATCGAGA
AAAGGCTGGTCAACACTCAACAAAAACAACTAGAGCAAGTAAATGGGTAT
AACGAGGACATGTTACGATATGTTGATAAAACCACATACAAAATGGTAGA
GGAGTTCCACGATGACGGGAAAAGACATTGGCCATGTGAAATAACACGCC
ATTAATCATTCATTTCAATATACAGTATAgaagattttgtaatttttgga
aaaaat Coding sequence (CDS) from alignment at sc0000038:39429..42484+ >TCONS_00003860 ID=TCONS_00003860|Name=TCONS_00003860|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at sc0000038:39429..42484+ (Clytia hemisphaerica)
ATGGGTggtaaaaagaacaaaaataaagaaaaaggtccTGGTTTAACACC
AGCGCAACGGAAAAATAATGCTCGAAAATCATTGAAAGATCAAGTCGAAa
tcaaaaaaaccttgaaaagtatCCAAGAAATTGAACGAGATGATAAATTA
TGGGACTCGGAATCTGCGAAACTGGCTGAGCTTGGTAAACAAGTTGAAGA
AGGTAAGAAAGATTATGGAAAAGTAGAAAGTGAACGTAATACGAGGTTGT
GTACTACTTTTTTCCATACACCTAACTCAAACCAAGAACGAAGAGTCGAT
TATAAAAAAGCCATGACGAACTTAGACCATGTCAACATGCTCCTGAAGGA
AGACTTGGGTAAGGAAACAAAGAAATACGCCTCATGGTATAACGCTTGTG
TTCATATGTTGGATAAAGAGAAAATAGCCAAGGAGAAATGCCAGTTATTC
CATACAAGTGATAAAGGAAAGATAGAGGATCTGGTCGAAGAAAAAAGAAA
CGCAGAATCGAAGCTGAAAGAATTGAAAGGCATTTATCAACAAATGGCGG
AGCTTGATAGGGAACGACAAATCAATAATGTCAATTTGACTTTAGAAGAA
TATATGACGCTCAAGCATAACCGTTCATCGAGAAGTATAGACGAATTACG
AAAGCTCTTGAAACAGGTCAACACACAATCGCGACAGATACAGAAGGAGT
TGGAAAACCGTCGTACAACCTGTCAAAAGATTAGTAACCAGATTAAACAA
AATGAAATCGCCTCCGTGGAGGAACACCAACGATATAAAGACATCGTGGT
GGAGAACAAAAAACTAATGGCGAAGCTGGAATATTTGAATAAGAAACAAC
ACTCCGTCGCAGAGGAAAAGAATCAAGCTTTGATTGACATGGAACGTGAA
AAAGAACGAGCATATCATGAAAGTAAAGAAACGATCGAAATCGAGGAAAG
GATCAAACAATTACGACTTCAACACGACTTAGATAGAGCCTCCGAAGCTA
AATACGAAGAGATTTTACAAGCAGCCAAGGAACAGGACTGGGCACAAGAC
GTGGCTTTGAAGCATGAACGAGACAATATCACATCGTTGACGGAGAGAAT
TTGTATCGAGAAAAGGCTGGTCAACACTCAACAAAAACAACTAGAGCAAG
TAAATGGGTATAACGAGGACATGTTACGATATGTTGATAAAACCACATAC
AAAATGGTAGAGGAGTTCCACGATGACGGGAAAAGACATTGGCCATGTGA
AATAACACGCCATTAAATGGGTggtaaaaagaacaaaaataaagaaaaag
gtccTGGTTTAACACCAGCGCAACGGAAAAATAATGCTCGAAAATCATTG
AAAGATCAAGTCGAAatcaaaaaaaccttgaaaagtatCCAAGAAATTGA
ACGAGATGATAAATTATGGGACTCGGAATCTGCGAAACTGGCTGAGCTTG
GTAAACAAGTTGAAGAAGGTAAGAAAGATTATGGAAAAGTAGAAAGTGAA
CGTAATACGAGGTTGTGTACTACTTTTTTCCATACACCTAACTCAAACCA
AGAACGAAGAGTCGATTATAAAAAAGCCATGACGAACTTAGACCATGTCA
ACATGCTCCTGAAGGAAGACTTGGGTAAGGAAACAAAGAAATACGCCTCA
TGGTATAACGCTTGTGTTCATATGTTGGATAAAGAGAAAATAGCCAAGGA
GAAATGCCAGTTATTCCATACAAGTGATAAAGGAAAGATAGAGGATCTGG
TCGAAGAAAAAAGAAACGCAGAATCGAAGCTGAAAGAATTGAAAGGCATT
TATCAACAAATGGCGGAGCTTGATAGGGAACGACAAATCAATAATGTCAA
TTTGACTTTAGAAGAATATATGACGCTCAAGCATAACCGTTCATCGAGAA
GTATAGACGAATTACGAAAGCTCTTGAAACAGGTCAACACACAATCGCGA
CAGATACAGAAGGAGTTGGAAAACCGTCGTACAACCTGTCAAAAGATTAG
TAACCAGATTAAACAAAATGAAATCGCCTCCGTGGAGGAACACCAACGAT
ATAAAGACATCGTGGTGGAGAACAAAAAACTAATGGCGAAGCTGGAATAT
TTGAATAAGAAACAACACTCCGTCGCAGAGGAAAAGAATCAAGCTTTGAT
TGACATGGAACGTGAAAAAGAACGAGCATATCATGAAAGTAAAGAAACGA
TCGAAATCGAGGAAAGGATCAAACAATTACGACTTCAACACGACTTAGAT
AGAGCCTCCGAAGCTAAATACGAAGAGATTTTACAAGCAGCCAAGGAACA
GGACTGGGCACAAGACGTGGCTTTGAAGCATGAACGAGACAATATCACAT
CGTTGACGGAGAGAATTTGTATCGAGAAAAGGCTGGTCAACACTCAACAA
AAACAACTAGAGCAAGTAAATGGGTATAACGAGGACATGTTACGATATGT
TGATAAAACCACATACAAAATGGTAGAGGAGTTCCACGATGACGGGAAAA
GACATTGGCCATGTGAAATAACACGCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003860-exon-sc0000038-1491911889:39429..40476 | TCONS_00003860-exon-sc0000038-1491911889:39429..40476 | Clytia hemisphaerica | exon |
| TCONS_00003860-exon-sc0000038-1510915933:39429..40476 | TCONS_00003860-exon-sc0000038-1510915933:39429..40476 | Clytia hemisphaerica | exon |
| TCONS_00003860-exon-sc0000038-1575043694:39429..40476 | TCONS_00003860-exon-sc0000038-1575043694:39429..40476 | Clytia hemisphaerica | exon |
| TCONS_00003860-exon-sc0000038-1491911889:41790..42484 | TCONS_00003860-exon-sc0000038-1491911889:41790..42484 | Clytia hemisphaerica | exon |
| TCONS_00003860-exon-sc0000038-1510915933:41790..42484 | TCONS_00003860-exon-sc0000038-1510915933:41790..42484 | Clytia hemisphaerica | exon |
| TCONS_00003860-exon-sc0000038-1575043694:41790..42484 | TCONS_00003860-exon-sc0000038-1575043694:41790..42484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:39429..42484 + |
Blast
The following BLAST results are available for this feature:
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