TCONS_00003939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003939
Unique NameTCONS_00003939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003939 ID=TCONS_00003939|Name=TCONS_00003939|organism=Clytia hemisphaerica|type=transcript|length=1900bp
cccTGGATATGGTGCTGTGATTTGCCTTCTGTCTCCTGTCAGCCAAAATG
AATAGATgttaatttaaaatttgaataaagtaaAAACGATGTCATTCCAA
TCAGAAGGTATTCGACATATTGAAATTAACAAGAAATCAAACTATGATAG
TGACAATTTTGAATCAGACGATAATGATGATGTAGATGAAACAAACTCCT
ACAGTTCAAGTCAACAATCTTCCTCCAACTCTGATGAAGACAGTGATAAA
TCTGAATCAGAAGACGAATTATCAAACTCTTCCAAGAGTGATATTGAAGA
GAAGGGCAATACAGTAAATGAAGAATCTGATAAAGATAtagaagatgaaa
aagaagagGAATATATTAAACCTaaaaaatcagtaaattttgattCACTT
TTGAaagcagtcattgaaatcaatgATAAGATAGAGGATAAAGAACGTCA
GCTGAAAGCATTGGGAGACACTAAGAACAagcatttcaaaaaaggatcaa
aatctAATCCAGGAAAGAAGACAAGACCAAGAACAGCAGTGTTAGAGTAC
AGAGATGAATCTGagtattcttcttttgatgGAAATGAGAGTGACTCAGA
ATCGCATGTTTCAATGAATTCTCGAGCATCATCTTCAATCAGGAAAAGGC
CTCAATCTAGTGTCCCAAGTCTCCATGGCTCTTCATCAACCTCACGAATG
AATATGTCCTTTAGTAATGAGAAAGTTAAATCAATTGACAAAGAGAATCA
AAGGCTTTTAAAGCAATTACTTCATACAAAAATGTCCGCCAAAAAGCCTG
CCATTGTAAGAAAGAAAGCACCTCAGGCTAGGGTACAATCAGCATCATCT
ATCAATCGTAACAAACGTCAACTAGAGATTGAACGTGAAAATCTTCGTCT
ACTAGGCAAGTTGCAGAATGTTAAACCGTCTAGTGGAATAACAAGAACCA
CCCTTCTTTCGGATCACTCTAAGCATGAACAGTTTTCTGGAAGAATTGGC
AGATCATCTCGACCGGTTAGTGCAATATCTGCATCACATGGAAGACGCCC
CTTTTCTGGTCGATCATcaagtagtaaatattttgatgattcaGCAAGTA
TGATGAGTGCATCTTCTACTAGCTCTAAAAAGTCAAACAAGGATAGACTT
ACAAAGGGAAATCTAGAGCGTCAAAGAAACTGGAATGATCGTTGGTAATG
TTGGGGTAAACTTATATGAATGTACCATTTACCAAGAAAGAACTTTTTTA
TCTTATATCAGATTTTTCCCATTCCATGAAATATTTGATTGGTATAACGA
AATTCTGATTGATAAGATAATAATTTGTCTGGTTGGAGCTTTTTCCATTC
AGCTACTTTATCAGATTTTAGGCTGGATCATAGTGATGATATTGGgttat
atttatttttagctCTGCCTTTAACCATATAGTTTGGATTGATTTAAAAG
TCATCCCCAAGCCTTCTCTAACCAGCTTTAACCCACAAATATCTTCACTA
GATTGAATTTCTATTTCCACCCTGCTgaagcatttttaagcaaagTTATG
CACcaccttcaaaaaatttgaatttgttcAGCCAGGACCATTCTCTTGCT
TCCCCGACCTCACCATACTAGTTGCTTGTTTTGATTAGCAAATCACCTTT
ACTGAACTGTGGTCTATAGTTAAAAAGGCACATCATTTTAAACACCTTac
gtttgagttttttcttgtgtcatttttttattcatttactttttaaatta
ttattgTATCATATGTATTATGCATTTCAGTTTAAAAtgagaagaatttt
ttttatattattgaGTATAATATCAACATCAAAGTCAGATATAAGAATTA
acccctttttttattttaacactctttattttgattttaaagacAAATTA
Run BLAST on NCBI

transcript from alignment at sc0000038:58395..61293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003939 ID=TCONS_00003939|Name=TCONS_00003939|organism=Clytia hemisphaerica|type=transcript|length=2899bp|location=Sequence derived from alignment at sc0000038:58395..61293- (Clytia hemisphaerica)
CCCTGGATATGGTGCTGTGATTTGCCTTCTGTCTCCTGTCAGCCAAAATG
AATAGGTAAACAGTTTTTTCACTAGTGTGTTTTTGTGTGTTGCTAGCCTG
TTTTTGAAAGTTTCAGAAATGCAACATTACTGCCTCTTTTTTAACTTAGT
GTGCCATTTTCAACTTTTTAATTTAATGAGTTATAGTTGTTTGTGTGTTG
GATGGACATGTCATGTTGCTGTTTGTAAGTCAGTCTGATAGCGATATACC
TACCAATCTAGTTTCAACACCCTTATATAGGGATAGGAATATAAGGAAGG
TTGAAATTGAAACTATGCTAGGGAATAGATCTTTTTATTTTTCCTAGTAG
TGCTAGTGGATTTTCATCAATAAGCAACTTGGACCATGAAATCGCTACTG
TAAGTTGGTCTCTAATGTCAGTTAGTCACACTAGCGTCCCACCGAAATGC
GTATCAAAGATTAATGCTGCGAAAGTGCTATATCGTTTACTTGACTCGCA
AGCAAAGAAATGCCTCGCCAAACACTTCTAGAGGGATTCATGAAAAAATA
ACCCGACGCTTTCTAATGAAATTAACATTCTCAAAAACTATGAGAAATTG
CCTAAAATTTGAGCTATAGATGAAAAAATTTGAGCCAAGCCGACCTTGAA
AACTAATTTGAAAAGATCTACAGGGGAGAGGGAACCCACCTAGATCCGTG
AACCGCCGGATAGGCCATTTCCCGGAAAATTTGCCGGACCTCAAACACTG
ACCCATTTACATGTGCGGAATAATTTTTACTTTAGTGTATTAACAAGGCC
TTAAAAATCGAAATGCTGTCTCAGGAATTGAATAACAAAATTTGGTTGGT
TGATGGTTGACAAATACAAGAATTTGCTTTAAACTACTTATAACATTGAA
ATGTGTTTTATCTAATTTTTAGTGAGCTTTTAAATTATCATGGTAAAAAG
TCGTCTGGGACAACGTCAGGAAAGCTAGTTCTTCATACTTCTTACAATGT
AGAATTTGTCAAAAGCTATCAAGAATTTGAAAAAATATCCTCTTCTAAAT
TTAGATGTTAATTTAAAATTTGAATAAAGTAAAAACGATGTCATTCCAAT
CAGAAGGTATTCGACATATTGAAATTAACAAGAAATCAAACTATGATAGT
GACAATTTTGAATCAGACGATAATGATGATGTAGATGAAACAAACTCCTA
CAGTTCAAGTCAACAATCTTCCTCCAACTCTGATGAAGACAGTGATAAAT
CTGAATCAGAAGACGAATTATCAAACTCTTCCAAGAGTGATATTGAAGAG
AAGGGCAATACAGTAAATGAAGAATCTGATAAAGATATAGAAGATGAAAA
AGAAGAGGAATATATTAAACCTAAAAAATCAGTAAATTTTGATTCACTTT
TGAAAGCAGTCATTGAAATCAATGATAAGATAGAGGATAAAGAACGTCAG
CTGAAAGCATTGGGAGACACTAAGAACAAGCATTTCAAAAAAGGATCAAA
ATCTAATCCAGGAAAGAAGACAAGACCAAGAACAGCAGTGTTAGAGTACA
GAGATGAATCTGAGTATTCTTCTTTTGATGGAAATGAGAGTGACTCAGAA
TCGCATGTTTCAATGAATTCTCGAGCATCATCTTCAATCAGGAAAAGGCC
TCAATCTAGTGTCCCAAGTCTCCATGGCTCTTCATCAACCTCACGAATGA
ATATGTCCTTTAGTAATGAGAAAGTTAAATCAATTGACAAAGAGAATCAA
AGGCTTTTAAAGCAATTACTTCATACAAAAATGTCCGCCAAAAAGCCTGC
CATTGTAAGAAAGAAAGCACCTCAGGCTAGGGTACAATCAGCATCATCTA
TCAATCGTAACAAACGTCAACTAGAGATTGAACGTGAAAATCTTCGTCTA
CTAGGCAAGTTGCAGAATGTTAAACCGTCTAGTGGAATAACAAGAACCAC
CCTTCTTTCGGATCACTCTAAGCATGAACAGTTTTCTGGAAGAATTGGCA
GATCATCTCGACCGGTTAGTGCAATATCTGCATCACATGGAAGACGCCCC
TTTTCTGGTCGATCATCAAGTAGTAAATATTTTGATGATTCAGCAAGTAT
GATGAGTGCATCTTCTACTAGCTCTAAAAAGTCAAACAAGGATAGACTTA
CAAAGGGAAATCTAGAGCGTCAAAGAAACTGGAATGATCGTTGGTAATGT
TGGGGTAAACTTATATGAATGTACCATTTACCAAGAAAGAACTTTTTTAT
CTTATATCAGATTTTTCCCATTCCATGAAATATTTGATTGGTATAACGAA
ATTCTGATTGATAAGATAATAATTTGTCTGGTTGGAGCTTTTTCCATTCA
GCTACTTTATCAGATTTTAGGCTGGATCATAGTGATGATATTGGGTTATA
TTTATTTTTAGCTCTGCCTTTAACCATATAGTTTGGATTGATTTAAAAGT
CATCCCCAAGCCTTCTCTAACCAGCTTTAACCCACAAATATCTTCACTAG
ATTGAATTTCTATTTCCACCCTGCTGAAGCATTTTTAAGCAAAGTTATGC
ACCACCTTCAAAAAATTTGAATTTGTTCAGCCAGGACCATTCTCTTGCTT
CCCCGACCTCACCATACTAGTTGCTTGTTTTGATTAGCAAATCACCTTTA
CTGAACTGTGGTCTATAGTTAAAAAGGCACATCATTTTAAACACCTTACG
TTTGAGTTTTTTCTTGTGTCATTTTTTTATTCATTTACTTTTTAAATTAT
TATTGTATCATATGTATTATGCATTTCAGTTTAAAATGAGAAGAATTTTT
TTTATATTATTGAGTATAATATCAACATCAAAGTCAGATATAAGAATTAA
CCCCTTTTTTTATTTTAACACTCTTTATTTTGATTTTAAAGACAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002201XLOC_002201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003939-exon-sc0000038-1575043694:61239..61293TCONS_00003939-exon-sc0000038-1575043694:61239..61293Clytia hemisphaericaexon
TCONS_00003939-exon-sc0000038-1575043694:58395..60239TCONS_00003939-exon-sc0000038-1575043694:58395..60239Clytia hemisphaericaexon
TCONS_00003939-exon-sc0000038-1510915933:61239..61293TCONS_00003939-exon-sc0000038-1510915933:61239..61293Clytia hemisphaericaexon
TCONS_00003939-exon-sc0000038-1510915933:58395..60239TCONS_00003939-exon-sc0000038-1510915933:58395..60239Clytia hemisphaericaexon
TCONS_00003939-exon-sc0000038-1491911889:61239..61293TCONS_00003939-exon-sc0000038-1491911889:61239..61293Clytia hemisphaericaexon
TCONS_00003939-exon-sc0000038-1491911889:58395..60239TCONS_00003939-exon-sc0000038-1491911889:58395..60239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:58395..61293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.3652	27.9676	11.9371	8.38984	37.1772	26.0466	23.2512	24.5452	13.083	18.0887	13.4975	11.2621	8.20458	6.53531	6.7906	7.91381	6.86694	8.26526	12.3779	10.152	9.0471	7.92533	27.8324	24.7132	41.6725	35.0607	22.1368	17.3906	21.2071	22.2069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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